co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0045184: establishment of protein localization	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0070125: mitochondrial translational elongation	0.00E+00
12	GO:0042352: GDP-L-fucose salvage	0.00E+00
13	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
14	GO:0061157: mRNA destabilization	0.00E+00
15	GO:0002184: cytoplasmic translational termination	0.00E+00
16	GO:0046620: regulation of organ growth	4.83E-08
17	GO:0009734: auxin-activated signaling pathway	1.64E-05
18	GO:0018026: peptidyl-lysine monomethylation	3.17E-05
19	GO:0009733: response to auxin	3.43E-05
20	GO:0009658: chloroplast organization	5.17E-05
21	GO:0040008: regulation of growth	5.87E-05
22	GO:0010027: thylakoid membrane organization	1.30E-04
23	GO:0015995: chlorophyll biosynthetic process	1.83E-04
24	GO:0046739: transport of virus in multicellular host	2.04E-04
25	GO:1900865: chloroplast RNA modification	2.40E-04
26	GO:0010182: sugar mediated signaling pathway	3.42E-04
27	GO:0005983: starch catabolic process	4.41E-04
28	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.68E-04
29	GO:0048497: maintenance of floral organ identity	5.02E-04
30	GO:0016123: xanthophyll biosynthetic process	5.02E-04
31	GO:2000012: regulation of auxin polar transport	5.23E-04
32	GO:0009416: response to light stimulus	5.57E-04
33	GO:0010020: chloroplast fission	6.14E-04
34	GO:0009828: plant-type cell wall loosening	6.52E-04
35	GO:0042793: transcription from plastid promoter	6.95E-04
36	GO:0016554: cytidine to uridine editing	6.95E-04
37	GO:0009959: negative gravitropism	6.95E-04
38	GO:0042659: regulation of cell fate specification	8.73E-04
39	GO:0070509: calcium ion import	8.73E-04
40	GO:0000025: maltose catabolic process	8.73E-04
41	GO:0043266: regulation of potassium ion transport	8.73E-04
42	GO:0010442: guard cell morphogenesis	8.73E-04
43	GO:0010063: positive regulation of trichoblast fate specification	8.73E-04
44	GO:0010480: microsporocyte differentiation	8.73E-04
45	GO:0005980: glycogen catabolic process	8.73E-04
46	GO:0030198: extracellular matrix organization	8.73E-04
47	GO:0006438: valyl-tRNA aminoacylation	8.73E-04
48	GO:0042371: vitamin K biosynthetic process	8.73E-04
49	GO:0090558: plant epidermis development	8.73E-04
50	GO:0043686: co-translational protein modification	8.73E-04
51	GO:2000021: regulation of ion homeostasis	8.73E-04
52	GO:0035987: endodermal cell differentiation	8.73E-04
53	GO:0046520: sphingoid biosynthetic process	8.73E-04
54	GO:0043007: maintenance of rDNA	8.73E-04
55	GO:0051247: positive regulation of protein metabolic process	8.73E-04
56	GO:1902458: positive regulation of stomatal opening	8.73E-04
57	GO:0015904: tetracycline transport	8.73E-04
58	GO:2000905: negative regulation of starch metabolic process	8.73E-04
59	GO:0005991: trehalose metabolic process	8.73E-04
60	GO:0000305: response to oxygen radical	8.73E-04
61	GO:0000023: maltose metabolic process	8.73E-04
62	GO:0006419: alanyl-tRNA aminoacylation	8.73E-04
63	GO:0042372: phylloquinone biosynthetic process	9.17E-04
64	GO:0009790: embryo development	9.33E-04
65	GO:0007275: multicellular organism development	9.90E-04
66	GO:0016042: lipid catabolic process	1.04E-03
67	GO:0048437: floral organ development	1.17E-03
68	GO:0010497: plasmodesmata-mediated intercellular transport	1.78E-03
69	GO:0009657: plastid organization	1.78E-03
70	GO:0052541: plant-type cell wall cellulose metabolic process	1.90E-03
71	GO:1900871: chloroplast mRNA modification	1.90E-03
72	GO:1901959: positive regulation of cutin biosynthetic process	1.90E-03
73	GO:0006432: phenylalanyl-tRNA aminoacylation	1.90E-03
74	GO:0007154: cell communication	1.90E-03
75	GO:0060359: response to ammonium ion	1.90E-03
76	GO:0048255: mRNA stabilization	1.90E-03
77	GO:0071497: cellular response to freezing	1.90E-03
78	GO:0080009: mRNA methylation	1.90E-03
79	GO:0009786: regulation of asymmetric cell division	1.90E-03
80	GO:0001682: tRNA 5'-leader removal	1.90E-03
81	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.90E-03
82	GO:0006568: tryptophan metabolic process	1.90E-03
83	GO:2000123: positive regulation of stomatal complex development	1.90E-03
84	GO:0009629: response to gravity	1.90E-03
85	GO:0009742: brassinosteroid mediated signaling pathway	2.03E-03
86	GO:0010305: leaf vascular tissue pattern formation	2.27E-03
87	GO:0009638: phototropism	2.54E-03
88	GO:0009926: auxin polar transport	2.75E-03
89	GO:0048829: root cap development	2.97E-03
90	GO:0009641: shade avoidance	2.97E-03
91	GO:0006949: syncytium formation	2.97E-03
92	GO:0048586: regulation of long-day photoperiodism, flowering	3.15E-03
93	GO:0033591: response to L-ascorbic acid	3.15E-03
94	GO:0090708: specification of plant organ axis polarity	3.15E-03
95	GO:1902448: positive regulation of shade avoidance	3.15E-03
96	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	3.15E-03
97	GO:0090153: regulation of sphingolipid biosynthetic process	3.15E-03
98	GO:0043157: response to cation stress	3.15E-03
99	GO:0071398: cellular response to fatty acid	3.15E-03
100	GO:1904278: positive regulation of wax biosynthetic process	3.15E-03
101	GO:0072661: protein targeting to plasma membrane	3.15E-03
102	GO:0030261: chromosome condensation	3.15E-03
103	GO:0010583: response to cyclopentenone	3.25E-03
104	GO:0009773: photosynthetic electron transport in photosystem I	3.45E-03
105	GO:0009664: plant-type cell wall organization	3.91E-03
106	GO:0010588: cotyledon vascular tissue pattern formation	4.51E-03
107	GO:0010102: lateral root morphogenesis	4.51E-03
108	GO:0019048: modulation by virus of host morphology or physiology	4.59E-03
109	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.59E-03
110	GO:0043572: plastid fission	4.59E-03
111	GO:0090308: regulation of methylation-dependent chromatin silencing	4.59E-03
112	GO:0031048: chromatin silencing by small RNA	4.59E-03
113	GO:0016556: mRNA modification	4.59E-03
114	GO:0010371: regulation of gibberellin biosynthetic process	4.59E-03
115	GO:0010071: root meristem specification	4.59E-03
116	GO:0007231: osmosensory signaling pathway	4.59E-03
117	GO:0009102: biotin biosynthetic process	4.59E-03
118	GO:0009647: skotomorphogenesis	4.59E-03
119	GO:0010207: photosystem II assembly	5.10E-03
120	GO:0070588: calcium ion transmembrane transport	5.73E-03
121	GO:0009765: photosynthesis, light harvesting	6.21E-03
122	GO:2000306: positive regulation of photomorphogenesis	6.21E-03
123	GO:2000038: regulation of stomatal complex development	6.21E-03
124	GO:0022622: root system development	6.21E-03
125	GO:0006221: pyrimidine nucleotide biosynthetic process	6.21E-03
126	GO:0045723: positive regulation of fatty acid biosynthetic process	6.21E-03
127	GO:0051567: histone H3-K9 methylation	6.21E-03
128	GO:0008295: spermidine biosynthetic process	6.21E-03
129	GO:0006749: glutathione metabolic process	6.21E-03
130	GO:1901141: regulation of lignin biosynthetic process	6.21E-03
131	GO:0010109: regulation of photosynthesis	6.21E-03
132	GO:0042274: ribosomal small subunit biogenesis	6.21E-03
133	GO:0030104: water homeostasis	6.21E-03
134	GO:0033500: carbohydrate homeostasis	6.21E-03
135	GO:0006071: glycerol metabolic process	6.40E-03
136	GO:0006833: water transport	6.40E-03
137	GO:0019953: sexual reproduction	7.86E-03
138	GO:0010375: stomatal complex patterning	8.00E-03
139	GO:0010236: plastoquinone biosynthetic process	8.00E-03
140	GO:0045038: protein import into chloroplast thylakoid membrane	8.00E-03
141	GO:0016120: carotene biosynthetic process	8.00E-03
142	GO:0031365: N-terminal protein amino acid modification	8.00E-03
143	GO:0016131: brassinosteroid metabolic process	8.00E-03
144	GO:0009793: embryo development ending in seed dormancy	8.34E-03
145	GO:0061077: chaperone-mediated protein folding	8.66E-03
146	GO:0030245: cellulose catabolic process	9.49E-03
147	GO:0009826: unidimensional cell growth	9.76E-03
148	GO:1902456: regulation of stomatal opening	9.96E-03
149	GO:0016458: gene silencing	9.96E-03
150	GO:0018258: protein O-linked glycosylation via hydroxyproline	9.96E-03
151	GO:0000741: karyogamy	9.96E-03
152	GO:0010405: arabinogalactan protein metabolic process	9.96E-03
153	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	9.96E-03
154	GO:0009913: epidermal cell differentiation	9.96E-03
155	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.04E-02
156	GO:0009693: ethylene biosynthetic process	1.04E-02
157	GO:0006458: 'de novo' protein folding	1.21E-02
158	GO:0017148: negative regulation of translation	1.21E-02
159	GO:0048280: vesicle fusion with Golgi apparatus	1.21E-02
160	GO:0030488: tRNA methylation	1.21E-02
161	GO:0042026: protein refolding	1.21E-02
162	GO:2000033: regulation of seed dormancy process	1.21E-02
163	GO:0080086: stamen filament development	1.21E-02
164	GO:2000067: regulation of root morphogenesis	1.21E-02
165	GO:0005975: carbohydrate metabolic process	1.22E-02
166	GO:0009640: photomorphogenesis	1.27E-02
167	GO:0080022: primary root development	1.33E-02
168	GO:0008033: tRNA processing	1.33E-02
169	GO:0010118: stomatal movement	1.33E-02
170	GO:0006351: transcription, DNA-templated	1.42E-02
171	GO:0030497: fatty acid elongation	1.43E-02
172	GO:0010444: guard mother cell differentiation	1.43E-02
173	GO:0006662: glycerol ether metabolic process	1.43E-02
174	GO:0006400: tRNA modification	1.43E-02
175	GO:0030307: positive regulation of cell growth	1.43E-02
176	GO:0032880: regulation of protein localization	1.43E-02
177	GO:0010161: red light signaling pathway	1.43E-02
178	GO:0048528: post-embryonic root development	1.43E-02
179	GO:0009772: photosynthetic electron transport in photosystem II	1.43E-02
180	GO:0009646: response to absence of light	1.54E-02
181	GO:0006855: drug transmembrane transport	1.55E-02
182	GO:0048564: photosystem I assembly	1.67E-02
183	GO:0006605: protein targeting	1.67E-02
184	GO:2000070: regulation of response to water deprivation	1.67E-02
185	GO:0055075: potassium ion homeostasis	1.67E-02
186	GO:0070413: trehalose metabolism in response to stress	1.67E-02
187	GO:0000105: histidine biosynthetic process	1.67E-02
188	GO:0071554: cell wall organization or biogenesis	1.78E-02
189	GO:0009451: RNA modification	1.79E-02
190	GO:0032502: developmental process	1.90E-02
191	GO:0015996: chlorophyll catabolic process	1.92E-02
192	GO:0010100: negative regulation of photomorphogenesis	1.92E-02
193	GO:0006526: arginine biosynthetic process	1.92E-02
194	GO:0032544: plastid translation	1.92E-02
195	GO:0007186: G-protein coupled receptor signaling pathway	1.92E-02
196	GO:0010099: regulation of photomorphogenesis	1.92E-02
197	GO:1901657: glycosyl compound metabolic process	2.03E-02
198	GO:0007166: cell surface receptor signaling pathway	2.11E-02
199	GO:0010206: photosystem II repair	2.19E-02
200	GO:0046916: cellular transition metal ion homeostasis	2.19E-02
201	GO:0006783: heme biosynthetic process	2.19E-02
202	GO:0000373: Group II intron splicing	2.19E-02
203	GO:0048507: meristem development	2.19E-02
204	GO:0000902: cell morphogenesis	2.19E-02
205	GO:0009835: fruit ripening	2.19E-02
206	GO:0048367: shoot system development	2.40E-02
207	GO:0051607: defense response to virus	2.44E-02
208	GO:0006779: porphyrin-containing compound biosynthetic process	2.47E-02
209	GO:0009098: leucine biosynthetic process	2.47E-02
210	GO:0031425: chloroplast RNA processing	2.47E-02
211	GO:0071577: zinc II ion transmembrane transport	2.47E-02
212	GO:2000280: regulation of root development	2.47E-02
213	GO:0009740: gibberellic acid mediated signaling pathway	2.70E-02
214	GO:0010029: regulation of seed germination	2.73E-02
215	GO:0010162: seed dormancy process	2.76E-02
216	GO:0006896: Golgi to vacuole transport	2.76E-02
217	GO:0006782: protoporphyrinogen IX biosynthetic process	2.76E-02
218	GO:0030422: production of siRNA involved in RNA interference	2.76E-02
219	GO:0045036: protein targeting to chloroplast	2.76E-02
220	GO:0031627: telomeric loop formation	2.76E-02
221	GO:0009299: mRNA transcription	2.76E-02
222	GO:0009073: aromatic amino acid family biosynthetic process	3.05E-02
223	GO:0006816: calcium ion transport	3.05E-02
224	GO:0048229: gametophyte development	3.05E-02
225	GO:0006415: translational termination	3.05E-02
226	GO:0010216: maintenance of DNA methylation	3.05E-02
227	GO:0010015: root morphogenesis	3.05E-02
228	GO:0012501: programmed cell death	3.37E-02
229	GO:0045037: protein import into chloroplast stroma	3.37E-02
230	GO:0009813: flavonoid biosynthetic process	3.54E-02
231	GO:0000160: phosphorelay signal transduction system	3.54E-02
232	GO:0030048: actin filament-based movement	3.69E-02
233	GO:0010628: positive regulation of gene expression	3.69E-02
234	GO:0006006: glucose metabolic process	3.69E-02
235	GO:0009785: blue light signaling pathway	3.69E-02
236	GO:0050826: response to freezing	3.69E-02
237	GO:0009691: cytokinin biosynthetic process	3.69E-02
238	GO:0009718: anthocyanin-containing compound biosynthetic process	3.69E-02
239	GO:0010075: regulation of meristem growth	3.69E-02
240	GO:0009725: response to hormone	3.69E-02
241	GO:0009767: photosynthetic electron transport chain	3.69E-02
242	GO:0009887: animal organ morphogenesis	4.02E-02
243	GO:0009266: response to temperature stimulus	4.02E-02
244	GO:0009934: regulation of meristem structural organization	4.02E-02
245	GO:0006865: amino acid transport	4.08E-02
246	GO:0048366: leaf development	4.18E-02
247	GO:0080188: RNA-directed DNA methylation	4.36E-02
248	GO:0090351: seedling development	4.36E-02
249	GO:0010030: positive regulation of seed germination	4.36E-02
250	GO:0034599: cellular response to oxidative stress	4.45E-02
251	GO:0006468: protein phosphorylation	4.67E-02
252	GO:0000162: tryptophan biosynthetic process	4.71E-02
253	GO:0030001: metal ion transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005363: maltose transmembrane transporter activity	0.00E+00
2	GO:0050201: fucokinase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0015267: channel activity	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
10	GO:0005201: extracellular matrix structural constituent	0.00E+00
11	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
12	GO:0004076: biotin synthase activity	0.00E+00
13	GO:0071633: dihydroceramidase activity	0.00E+00
14	GO:0043023: ribosomal large subunit binding	2.04E-04
15	GO:0016279: protein-lysine N-methyltransferase activity	3.38E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	8.73E-04
17	GO:0004645: phosphorylase activity	8.73E-04
18	GO:0008184: glycogen phosphorylase activity	8.73E-04
19	GO:0009374: biotin binding	8.73E-04
20	GO:0019203: carbohydrate phosphatase activity	8.73E-04
21	GO:0008158: hedgehog receptor activity	8.73E-04
22	GO:0005080: protein kinase C binding	8.73E-04
23	GO:0050308: sugar-phosphatase activity	8.73E-04
24	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	8.73E-04
25	GO:0004832: valine-tRNA ligase activity	8.73E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.73E-04
27	GO:0004813: alanine-tRNA ligase activity	8.73E-04
28	GO:0042586: peptide deformylase activity	8.73E-04
29	GO:0052381: tRNA dimethylallyltransferase activity	8.73E-04
30	GO:0010313: phytochrome binding	8.73E-04
31	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	8.73E-04
32	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	8.73E-04
33	GO:0000170: sphingosine hydroxylase activity	8.73E-04
34	GO:0050139: nicotinate-N-glucosyltransferase activity	8.73E-04
35	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	8.73E-04
36	GO:0004856: xylulokinase activity	8.73E-04
37	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.73E-04
38	GO:0005528: FK506 binding	9.36E-04
39	GO:0004176: ATP-dependent peptidase activity	1.20E-03
40	GO:0052689: carboxylic ester hydrolase activity	1.82E-03
41	GO:0016630: protochlorophyllide reductase activity	1.90E-03
42	GO:0042284: sphingolipid delta-4 desaturase activity	1.90E-03
43	GO:0008493: tetracycline transporter activity	1.90E-03
44	GO:0004826: phenylalanine-tRNA ligase activity	1.90E-03
45	GO:0017118: lipoyltransferase activity	1.90E-03
46	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.90E-03
47	GO:0004362: glutathione-disulfide reductase activity	1.90E-03
48	GO:0003852: 2-isopropylmalate synthase activity	1.90E-03
49	GO:0043425: bHLH transcription factor binding	1.90E-03
50	GO:0004766: spermidine synthase activity	1.90E-03
51	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.14E-03
52	GO:0001085: RNA polymerase II transcription factor binding	2.27E-03
53	GO:0003913: DNA photolyase activity	3.15E-03
54	GO:0016805: dipeptidase activity	3.15E-03
55	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.15E-03
56	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.15E-03
57	GO:0004180: carboxypeptidase activity	3.15E-03
58	GO:0005504: fatty acid binding	3.15E-03
59	GO:0016788: hydrolase activity, acting on ester bonds	3.24E-03
60	GO:0000049: tRNA binding	3.96E-03
61	GO:0008237: metallopeptidase activity	4.14E-03
62	GO:0004519: endonuclease activity	4.15E-03
63	GO:0005262: calcium channel activity	4.51E-03
64	GO:0016149: translation release factor activity, codon specific	4.59E-03
65	GO:0009041: uridylate kinase activity	4.59E-03
66	GO:0035197: siRNA binding	4.59E-03
67	GO:0016851: magnesium chelatase activity	4.59E-03
68	GO:0001872: (1->3)-beta-D-glucan binding	4.59E-03
69	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	4.59E-03
70	GO:0045430: chalcone isomerase activity	6.21E-03
71	GO:0019199: transmembrane receptor protein kinase activity	6.21E-03
72	GO:0004335: galactokinase activity	6.21E-03
73	GO:0004659: prenyltransferase activity	6.21E-03
74	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	6.21E-03
75	GO:0015238: drug transmembrane transporter activity	7.22E-03
76	GO:0004222: metalloendopeptidase activity	7.69E-03
77	GO:0005345: purine nucleobase transmembrane transporter activity	7.86E-03
78	GO:0016773: phosphotransferase activity, alcohol group as acceptor	8.00E-03
79	GO:0003989: acetyl-CoA carboxylase activity	8.00E-03
80	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	8.17E-03
81	GO:0003723: RNA binding	8.52E-03
82	GO:0046983: protein dimerization activity	8.68E-03
83	GO:0004526: ribonuclease P activity	9.96E-03
84	GO:0004709: MAP kinase kinase kinase activity	9.96E-03
85	GO:0016208: AMP binding	9.96E-03
86	GO:0004462: lactoylglutathione lyase activity	9.96E-03
87	GO:2001070: starch binding	9.96E-03
88	GO:1990714: hydroxyproline O-galactosyltransferase activity	9.96E-03
89	GO:0008810: cellulase activity	1.04E-02
90	GO:0003727: single-stranded RNA binding	1.13E-02
91	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.21E-02
92	GO:0016832: aldehyde-lyase activity	1.21E-02
93	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.21E-02
94	GO:0047134: protein-disulfide reductase activity	1.23E-02
95	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.29E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
97	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.55E-02
98	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.55E-02
99	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.67E-02
100	GO:0046914: transition metal ion binding	1.92E-02
101	GO:0008173: RNA methyltransferase activity	1.92E-02
102	GO:0000156: phosphorelay response regulator activity	2.03E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.03E-02
104	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.19E-02
105	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.19E-02
106	GO:0003747: translation release factor activity	2.19E-02
107	GO:0004871: signal transducer activity	2.24E-02
108	GO:0016597: amino acid binding	2.44E-02
109	GO:0016413: O-acetyltransferase activity	2.44E-02
110	GO:0015020: glucuronosyltransferase activity	2.76E-02
111	GO:0015035: protein disulfide oxidoreductase activity	3.02E-02
112	GO:0102483: scopolin beta-glucosidase activity	3.04E-02
113	GO:0003691: double-stranded telomeric DNA binding	3.05E-02
114	GO:0044183: protein binding involved in protein folding	3.05E-02
115	GO:0047372: acylglycerol lipase activity	3.05E-02
116	GO:0000976: transcription regulatory region sequence-specific DNA binding	3.37E-02
117	GO:0004521: endoribonuclease activity	3.37E-02
118	GO:0003682: chromatin binding	3.58E-02
119	GO:0031072: heat shock protein binding	3.69E-02
120	GO:0003725: double-stranded RNA binding	3.69E-02
121	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.89E-02
122	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.02E-02
123	GO:0008266: poly(U) RNA binding	4.02E-02
124	GO:0003774: motor activity	4.02E-02
125	GO:0008083: growth factor activity	4.02E-02
126	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.10E-02
127	GO:0003712: transcription cofactor activity	4.36E-02
128	GO:0008146: sulfotransferase activity	4.36E-02
129	GO:0004190: aspartic-type endopeptidase activity	4.36E-02
130	GO:0030170: pyridoxal phosphate binding	4.38E-02
131	GO:0008422: beta-glucosidase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.09E-11
2	GO:0009570: chloroplast stroma	5.38E-10
3	GO:0009941: chloroplast envelope	3.85E-05
4	GO:0009534: chloroplast thylakoid	3.32E-04
5	GO:0009508: plastid chromosome	5.23E-04
6	GO:0009295: nucleoid	7.16E-04
7	GO:0000796: condensin complex	8.73E-04
8	GO:0005886: plasma membrane	9.26E-04
9	GO:0031357: integral component of chloroplast inner membrane	1.90E-03
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.90E-03
11	GO:0046658: anchored component of plasma membrane	2.29E-03
12	GO:0009543: chloroplast thylakoid lumen	2.73E-03
13	GO:0009528: plastid inner membrane	3.15E-03
14	GO:0019897: extrinsic component of plasma membrane	3.15E-03
15	GO:0010007: magnesium chelatase complex	3.15E-03
16	GO:0030139: endocytic vesicle	3.15E-03
17	GO:0009317: acetyl-CoA carboxylase complex	3.15E-03
18	GO:0005719: nuclear euchromatin	4.59E-03
19	GO:0032585: multivesicular body membrane	4.59E-03
20	GO:0031969: chloroplast membrane	4.79E-03
21	GO:0005667: transcription factor complex	5.54E-03
22	GO:0009544: chloroplast ATP synthase complex	6.21E-03
23	GO:0009527: plastid outer membrane	6.21E-03
24	GO:0009707: chloroplast outer membrane	6.77E-03
25	GO:0009706: chloroplast inner membrane	7.50E-03
26	GO:0009535: chloroplast thylakoid membrane	7.56E-03
27	GO:0009654: photosystem II oxygen evolving complex	7.86E-03
28	GO:0005655: nucleolar ribonuclease P complex	1.21E-02
29	GO:0031225: anchored component of membrane	1.25E-02
30	GO:0009986: cell surface	1.43E-02
31	GO:0009536: plastid	1.60E-02
32	GO:0019898: extrinsic component of membrane	1.66E-02
33	GO:0048226: Casparian strip	1.67E-02
34	GO:0012507: ER to Golgi transport vesicle membrane	1.67E-02
35	GO:0009501: amyloplast	1.67E-02
36	GO:0000783: nuclear telomere cap complex	1.92E-02
37	GO:0005720: nuclear heterochromatin	2.19E-02
38	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.19E-02
39	GO:0010319: stromule	2.29E-02
40	GO:0015030: Cajal body	2.47E-02
41	GO:0030529: intracellular ribonucleoprotein complex	2.58E-02
42	GO:0000418: DNA-directed RNA polymerase IV complex	2.76E-02
43	GO:0016459: myosin complex	2.76E-02
44	GO:0090404: pollen tube tip	3.05E-02
45	GO:0005884: actin filament	3.05E-02
46	GO:0043231: intracellular membrane-bounded organelle	3.46E-02
47	GO:0030095: chloroplast photosystem II	4.02E-02
48	GO:0009579: thylakoid	4.27E-02