co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0046486: glycerolipid metabolic process	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
5	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
6	GO:0006650: glycerophospholipid metabolic process	2.61E-06
7	GO:0042255: ribosome assembly	2.12E-04
8	GO:0032958: inositol phosphate biosynthetic process	2.36E-04
9	GO:0051013: microtubule severing	2.36E-04
10	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.36E-04
11	GO:0006438: valyl-tRNA aminoacylation	2.36E-04
12	GO:0009658: chloroplast organization	3.20E-04
13	GO:0061062: regulation of nematode larval development	5.24E-04
14	GO:0001736: establishment of planar polarity	5.24E-04
15	GO:0043039: tRNA aminoacylation	5.24E-04
16	GO:0080005: photosystem stoichiometry adjustment	5.24E-04
17	GO:0009825: multidimensional cell growth	8.34E-04
18	GO:0006518: peptide metabolic process	8.52E-04
19	GO:0030029: actin filament-based process	8.52E-04
20	GO:0045910: negative regulation of DNA recombination	8.52E-04
21	GO:0090506: axillary shoot meristem initiation	8.52E-04
22	GO:0034090: maintenance of meiotic sister chromatid cohesion	8.52E-04
23	GO:0046168: glycerol-3-phosphate catabolic process	8.52E-04
24	GO:0006863: purine nucleobase transport	9.25E-04
25	GO:0006424: glutamyl-tRNA aminoacylation	1.21E-03
26	GO:2000904: regulation of starch metabolic process	1.21E-03
27	GO:0045017: glycerolipid biosynthetic process	1.21E-03
28	GO:0006020: inositol metabolic process	1.21E-03
29	GO:0044211: CTP salvage	1.21E-03
30	GO:0007276: gamete generation	1.21E-03
31	GO:0006072: glycerol-3-phosphate metabolic process	1.21E-03
32	GO:0042127: regulation of cell proliferation	1.59E-03
33	GO:0042991: transcription factor import into nucleus	1.62E-03
34	GO:0009956: radial pattern formation	1.62E-03
35	GO:0044206: UMP salvage	1.62E-03
36	GO:0031365: N-terminal protein amino acid modification	2.07E-03
37	GO:0009107: lipoate biosynthetic process	2.07E-03
38	GO:0008654: phospholipid biosynthetic process	2.31E-03
39	GO:0009624: response to nematode	2.38E-03
40	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.55E-03
41	GO:0003006: developmental process involved in reproduction	2.55E-03
42	GO:0010942: positive regulation of cell death	2.55E-03
43	GO:0016554: cytidine to uridine editing	2.55E-03
44	GO:0006206: pyrimidine nucleobase metabolic process	2.55E-03
45	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.55E-03
46	GO:0032502: developmental process	2.63E-03
47	GO:0010583: response to cyclopentenone	2.63E-03
48	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.06E-03
49	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.06E-03
50	GO:0009733: response to auxin	3.27E-03
51	GO:0010444: guard mother cell differentiation	3.61E-03
52	GO:0000082: G1/S transition of mitotic cell cycle	3.61E-03
53	GO:0010098: suspensor development	3.61E-03
54	GO:0010492: maintenance of shoot apical meristem identity	4.19E-03
55	GO:0006353: DNA-templated transcription, termination	4.19E-03
56	GO:0007186: G-protein coupled receptor signaling pathway	4.79E-03
57	GO:0009832: plant-type cell wall biogenesis	4.87E-03
58	GO:0010311: lateral root formation	4.87E-03
59	GO:0048589: developmental growth	5.43E-03
60	GO:0048507: meristem development	5.43E-03
61	GO:0016573: histone acetylation	6.09E-03
62	GO:0006779: porphyrin-containing compound biosynthetic process	6.09E-03
63	GO:1900865: chloroplast RNA modification	6.09E-03
64	GO:0016571: histone methylation	6.09E-03
65	GO:0048829: root cap development	6.78E-03
66	GO:0009641: shade avoidance	6.78E-03
67	GO:0006298: mismatch repair	6.78E-03
68	GO:0010192: mucilage biosynthetic process	6.78E-03
69	GO:0006782: protoporphyrinogen IX biosynthetic process	6.78E-03
70	GO:0009734: auxin-activated signaling pathway	7.05E-03
71	GO:0009750: response to fructose	7.50E-03
72	GO:0048765: root hair cell differentiation	7.50E-03
73	GO:0008285: negative regulation of cell proliferation	7.50E-03
74	GO:0009089: lysine biosynthetic process via diaminopimelate	7.50E-03
75	GO:0009926: auxin polar transport	7.57E-03
76	GO:0009744: response to sucrose	7.57E-03
77	GO:0045037: protein import into chloroplast stroma	8.25E-03
78	GO:0010582: floral meristem determinacy	8.25E-03
79	GO:0010152: pollen maturation	8.25E-03
80	GO:0009767: photosynthetic electron transport chain	9.02E-03
81	GO:0010102: lateral root morphogenesis	9.02E-03
82	GO:0010223: secondary shoot formation	9.82E-03
83	GO:0009887: animal organ morphogenesis	9.82E-03
84	GO:0010540: basipetal auxin transport	9.82E-03
85	GO:0009266: response to temperature stimulus	9.82E-03
86	GO:0006302: double-strand break repair	9.82E-03
87	GO:0048467: gynoecium development	9.82E-03
88	GO:0009933: meristem structural organization	9.82E-03
89	GO:0009736: cytokinin-activated signaling pathway	1.02E-02
90	GO:0080188: RNA-directed DNA methylation	1.06E-02
91	GO:0051301: cell division	1.14E-02
92	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.14E-02
93	GO:0009833: plant-type primary cell wall biogenesis	1.15E-02
94	GO:0051017: actin filament bundle assembly	1.24E-02
95	GO:0006338: chromatin remodeling	1.24E-02
96	GO:0048367: shoot system development	1.25E-02
97	GO:0006418: tRNA aminoacylation for protein translation	1.32E-02
98	GO:0043622: cortical microtubule organization	1.32E-02
99	GO:0009793: embryo development ending in seed dormancy	1.34E-02
100	GO:0045892: negative regulation of transcription, DNA-templated	1.40E-02
101	GO:0003333: amino acid transmembrane transport	1.42E-02
102	GO:0006306: DNA methylation	1.42E-02
103	GO:0051321: meiotic cell cycle	1.42E-02
104	GO:0007005: mitochondrion organization	1.51E-02
105	GO:0016226: iron-sulfur cluster assembly	1.51E-02
106	GO:0051726: regulation of cell cycle	1.55E-02
107	GO:0001944: vasculature development	1.61E-02
108	GO:0009686: gibberellin biosynthetic process	1.61E-02
109	GO:0048443: stamen development	1.70E-02
110	GO:0010091: trichome branching	1.70E-02
111	GO:0048364: root development	1.89E-02
112	GO:0000271: polysaccharide biosynthetic process	1.91E-02
113	GO:0000226: microtubule cytoskeleton organization	1.91E-02
114	GO:0009741: response to brassinosteroid	2.01E-02
115	GO:0045489: pectin biosynthetic process	2.01E-02
116	GO:0010305: leaf vascular tissue pattern formation	2.01E-02
117	GO:0009958: positive gravitropism	2.01E-02
118	GO:0048825: cotyledon development	2.23E-02
119	GO:0009749: response to glucose	2.23E-02
120	GO:0002229: defense response to oomycetes	2.34E-02
121	GO:0040008: regulation of growth	2.41E-02
122	GO:0031047: gene silencing by RNA	2.45E-02
123	GO:0006464: cellular protein modification process	2.68E-02
124	GO:0019760: glucosinolate metabolic process	2.68E-02
125	GO:0009639: response to red or far red light	2.68E-02
126	GO:0009739: response to gibberellin	2.83E-02
127	GO:0008380: RNA splicing	3.02E-02
128	GO:0009627: systemic acquired resistance	3.29E-02
129	GO:0010411: xyloglucan metabolic process	3.41E-02
130	GO:0048573: photoperiodism, flowering	3.41E-02
131	GO:0015995: chlorophyll biosynthetic process	3.41E-02
132	GO:0016311: dephosphorylation	3.54E-02
133	GO:0030244: cellulose biosynthetic process	3.67E-02
134	GO:0009817: defense response to fungus, incompatible interaction	3.67E-02
135	GO:0048481: plant ovule development	3.67E-02
136	GO:0000160: phosphorelay signal transduction system	3.80E-02
137	GO:0009910: negative regulation of flower development	4.07E-02
138	GO:0006351: transcription, DNA-templated	4.16E-02
139	GO:0006865: amino acid transport	4.20E-02
140	GO:0016051: carbohydrate biosynthetic process	4.34E-02
141	GO:0009723: response to ethylene	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0010011: auxin binding	3.91E-05
3	GO:0004832: valine-tRNA ligase activity	2.36E-04
4	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.36E-04
5	GO:0000829: inositol heptakisphosphate kinase activity	2.36E-04
6	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.36E-04
7	GO:0008836: diaminopimelate decarboxylase activity	2.36E-04
8	GO:0000828: inositol hexakisphosphate kinase activity	2.36E-04
9	GO:0004818: glutamate-tRNA ligase activity	2.36E-04
10	GO:0008568: microtubule-severing ATPase activity	2.36E-04
11	GO:0017118: lipoyltransferase activity	5.24E-04
12	GO:0016415: octanoyltransferase activity	5.24E-04
13	GO:0004047: aminomethyltransferase activity	5.24E-04
14	GO:0008805: carbon-monoxide oxygenase activity	5.24E-04
15	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.52E-04
16	GO:0016707: gibberellin 3-beta-dioxygenase activity	8.52E-04
17	GO:0005345: purine nucleobase transmembrane transporter activity	1.12E-03
18	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.21E-03
19	GO:0003727: single-stranded RNA binding	1.59E-03
20	GO:0004845: uracil phosphoribosyltransferase activity	1.62E-03
21	GO:0010328: auxin influx transmembrane transporter activity	1.62E-03
22	GO:0008374: O-acyltransferase activity	2.07E-03
23	GO:0004462: lactoylglutathione lyase activity	2.55E-03
24	GO:0030983: mismatched DNA binding	2.55E-03
25	GO:0004849: uridine kinase activity	3.06E-03
26	GO:0008235: metalloexopeptidase activity	3.61E-03
27	GO:0004519: endonuclease activity	4.76E-03
28	GO:0004222: metalloendopeptidase activity	5.11E-03
29	GO:0004177: aminopeptidase activity	7.50E-03
30	GO:0000049: tRNA binding	8.25E-03
31	GO:0003725: double-stranded RNA binding	9.02E-03
32	GO:0008061: chitin binding	1.06E-02
33	GO:0003712: transcription cofactor activity	1.06E-02
34	GO:0008134: transcription factor binding	1.24E-02
35	GO:0033612: receptor serine/threonine kinase binding	1.42E-02
36	GO:0008408: 3'-5' exonuclease activity	1.42E-02
37	GO:0004707: MAP kinase activity	1.42E-02
38	GO:0042803: protein homodimerization activity	1.46E-02
39	GO:0004871: signal transducer activity	1.46E-02
40	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.51E-02
41	GO:0004722: protein serine/threonine phosphatase activity	1.54E-02
42	GO:0016760: cellulose synthase (UDP-forming) activity	1.61E-02
43	GO:0030570: pectate lyase activity	1.61E-02
44	GO:0005515: protein binding	1.73E-02
45	GO:0004812: aminoacyl-tRNA ligase activity	1.80E-02
46	GO:0019843: rRNA binding	1.83E-02
47	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.01E-02
48	GO:0019901: protein kinase binding	2.23E-02
49	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.34E-02
50	GO:0004518: nuclease activity	2.45E-02
51	GO:0043565: sequence-specific DNA binding	2.49E-02
52	GO:0000156: phosphorelay response regulator activity	2.56E-02
53	GO:0051015: actin filament binding	2.56E-02
54	GO:0016759: cellulose synthase activity	2.68E-02
55	GO:0003684: damaged DNA binding	2.68E-02
56	GO:0016791: phosphatase activity	2.68E-02
57	GO:0005200: structural constituent of cytoskeleton	2.80E-02
58	GO:0042802: identical protein binding	3.21E-02
59	GO:0004721: phosphoprotein phosphatase activity	3.41E-02
60	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.41E-02
61	GO:0016301: kinase activity	3.43E-02
62	GO:0005096: GTPase activator activity	3.80E-02
63	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.93E-02
64	GO:0030145: manganese ion binding	4.07E-02
65	GO:0003697: single-stranded DNA binding	4.34E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0031224: intrinsic component of membrane	0.00E+00
4	GO:0000791: euchromatin	2.36E-04
5	GO:0030870: Mre11 complex	5.24E-04
6	GO:0008287: protein serine/threonine phosphatase complex	8.52E-04
7	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.21E-03
8	GO:0009531: secondary cell wall	1.21E-03
9	GO:0000795: synaptonemal complex	2.07E-03
10	GO:0009986: cell surface	3.61E-03
11	GO:0009508: plastid chromosome	9.02E-03
12	GO:0005875: microtubule associated complex	1.15E-02
13	GO:0000419: DNA-directed RNA polymerase V complex	1.15E-02
14	GO:0015629: actin cytoskeleton	1.61E-02
15	GO:0009507: chloroplast	1.94E-02
16	GO:0000785: chromatin	2.45E-02
17	GO:0010319: stromule	2.80E-02
18	GO:0009295: nucleoid	2.80E-02
19	GO:0009707: chloroplast outer membrane	3.67E-02
20	GO:0009570: chloroplast stroma	4.09E-02
21	GO:0005874: microtubule	4.66E-02
22	GO:0031977: thylakoid lumen	4.90E-02