co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G08700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
3	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
4	GO:0046486: glycerolipid metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
8	GO:0009733: response to auxin	5.52E-06
9	GO:0061062: regulation of nematode larval development	6.42E-06
10	GO:0006650: glycerophospholipid metabolic process	6.42E-06
11	GO:0009686: gibberellin biosynthetic process	1.85E-05
12	GO:0009734: auxin-activated signaling pathway	9.62E-05
13	GO:0032958: inositol phosphate biosynthetic process	3.78E-04
14	GO:0051013: microtubule severing	3.78E-04
15	GO:0045786: negative regulation of cell cycle	3.78E-04
16	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.78E-04
17	GO:0006438: valyl-tRNA aminoacylation	3.78E-04
18	GO:0042255: ribosome assembly	4.26E-04
19	GO:0046620: regulation of organ growth	4.26E-04
20	GO:0007186: G-protein coupled receptor signaling pathway	5.22E-04
21	GO:0006351: transcription, DNA-templated	6.24E-04
22	GO:0010583: response to cyclopentenone	6.55E-04
23	GO:0080005: photosystem stoichiometry adjustment	8.22E-04
24	GO:0031648: protein destabilization	8.22E-04
25	GO:0043039: tRNA aminoacylation	8.22E-04
26	GO:0009658: chloroplast organization	1.10E-03
27	GO:0006518: peptide metabolic process	1.33E-03
28	GO:0048575: short-day photoperiodism, flowering	1.33E-03
29	GO:0045910: negative regulation of DNA recombination	1.33E-03
30	GO:0090506: axillary shoot meristem initiation	1.33E-03
31	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.33E-03
32	GO:0046168: glycerol-3-phosphate catabolic process	1.33E-03
33	GO:0009887: animal organ morphogenesis	1.44E-03
34	GO:0009825: multidimensional cell growth	1.61E-03
35	GO:0006424: glutamyl-tRNA aminoacylation	1.92E-03
36	GO:0010321: regulation of vegetative phase change	1.92E-03
37	GO:0045017: glycerolipid biosynthetic process	1.92E-03
38	GO:0006020: inositol metabolic process	1.92E-03
39	GO:0007276: gamete generation	1.92E-03
40	GO:0006072: glycerol-3-phosphate metabolic process	1.92E-03
41	GO:0009926: auxin polar transport	2.50E-03
42	GO:0042991: transcription factor import into nucleus	2.58E-03
43	GO:0009956: radial pattern formation	2.58E-03
44	GO:0048629: trichome patterning	2.58E-03
45	GO:0006355: regulation of transcription, DNA-templated	2.97E-03
46	GO:0010091: trichome branching	3.14E-03
47	GO:0042127: regulation of cell proliferation	3.14E-03
48	GO:0045487: gibberellin catabolic process	3.30E-03
49	GO:0048497: maintenance of floral organ identity	3.30E-03
50	GO:0009107: lipoate biosynthetic process	3.30E-03
51	GO:0071555: cell wall organization	3.42E-03
52	GO:0003006: developmental process involved in reproduction	4.08E-03
53	GO:0010942: positive regulation of cell death	4.08E-03
54	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	4.08E-03
55	GO:0016554: cytidine to uridine editing	4.08E-03
56	GO:0008654: phospholipid biosynthetic process	4.57E-03
57	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.92E-03
58	GO:0032502: developmental process	5.23E-03
59	GO:0009740: gibberellic acid mediated signaling pathway	5.31E-03
60	GO:0009624: response to nematode	5.73E-03
61	GO:0010098: suspensor development	5.81E-03
62	GO:0010444: guard mother cell differentiation	5.81E-03
63	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.81E-03
64	GO:0007050: cell cycle arrest	5.81E-03
65	GO:0000082: G1/S transition of mitotic cell cycle	5.81E-03
66	GO:0019760: glucosinolate metabolic process	5.94E-03
67	GO:0016567: protein ubiquitination	6.20E-03
68	GO:0006402: mRNA catabolic process	6.75E-03
69	GO:0009704: de-etiolation	6.75E-03
70	GO:0010492: maintenance of shoot apical meristem identity	6.75E-03
71	GO:0006353: DNA-templated transcription, termination	6.75E-03
72	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.01E-03
73	GO:0009657: plastid organization	7.75E-03
74	GO:0048573: photoperiodism, flowering	8.36E-03
75	GO:0009416: response to light stimulus	8.72E-03
76	GO:0051865: protein autoubiquitination	8.79E-03
77	GO:0048589: developmental growth	8.79E-03
78	GO:0009056: catabolic process	8.79E-03
79	GO:0048507: meristem development	8.79E-03
80	GO:0045892: negative regulation of transcription, DNA-templated	8.96E-03
81	GO:0009832: plant-type cell wall biogenesis	9.74E-03
82	GO:0006779: porphyrin-containing compound biosynthetic process	9.89E-03
83	GO:1900865: chloroplast RNA modification	9.89E-03
84	GO:0006811: ion transport	1.02E-02
85	GO:0040008: regulation of growth	1.09E-02
86	GO:0009641: shade avoidance	1.10E-02
87	GO:0006298: mismatch repair	1.10E-02
88	GO:0006949: syncytium formation	1.10E-02
89	GO:0010192: mucilage biosynthetic process	1.10E-02
90	GO:0010629: negative regulation of gene expression	1.10E-02
91	GO:0006782: protoporphyrinogen IX biosynthetic process	1.10E-02
92	GO:0009089: lysine biosynthetic process via diaminopimelate	1.22E-02
93	GO:0009750: response to fructose	1.22E-02
94	GO:0008285: negative regulation of cell proliferation	1.22E-02
95	GO:0048364: root development	1.28E-02
96	GO:0009739: response to gibberellin	1.33E-02
97	GO:0010152: pollen maturation	1.34E-02
98	GO:0012501: programmed cell death	1.34E-02
99	GO:0005983: starch catabolic process	1.34E-02
100	GO:0045037: protein import into chloroplast stroma	1.34E-02
101	GO:0010582: floral meristem determinacy	1.34E-02
102	GO:2000028: regulation of photoperiodism, flowering	1.47E-02
103	GO:0009767: photosynthetic electron transport chain	1.47E-02
104	GO:0010102: lateral root morphogenesis	1.47E-02
105	GO:0009744: response to sucrose	1.52E-02
106	GO:0042546: cell wall biogenesis	1.58E-02
107	GO:0010207: photosystem II assembly	1.60E-02
108	GO:0010223: secondary shoot formation	1.60E-02
109	GO:0010540: basipetal auxin transport	1.60E-02
110	GO:0006302: double-strand break repair	1.60E-02
111	GO:0048768: root hair cell tip growth	1.60E-02
112	GO:0048467: gynoecium development	1.60E-02
113	GO:0009933: meristem structural organization	1.60E-02
114	GO:0090351: seedling development	1.74E-02
115	GO:0006863: purine nucleobase transport	1.88E-02
116	GO:0009833: plant-type primary cell wall biogenesis	1.88E-02
117	GO:0009664: plant-type cell wall organization	1.91E-02
118	GO:0080147: root hair cell development	2.02E-02
119	GO:0009793: embryo development ending in seed dormancy	2.05E-02
120	GO:0019953: sexual reproduction	2.17E-02
121	GO:0006418: tRNA aminoacylation for protein translation	2.17E-02
122	GO:0006874: cellular calcium ion homeostasis	2.17E-02
123	GO:0043622: cortical microtubule organization	2.17E-02
124	GO:0051321: meiotic cell cycle	2.32E-02
125	GO:0016114: terpenoid biosynthetic process	2.32E-02
126	GO:0009908: flower development	2.44E-02
127	GO:0048366: leaf development	2.46E-02
128	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.48E-02
129	GO:0007005: mitochondrion organization	2.48E-02
130	GO:0010082: regulation of root meristem growth	2.64E-02
131	GO:0001944: vasculature development	2.64E-02
132	GO:0048443: stamen development	2.80E-02
133	GO:0006284: base-excision repair	2.80E-02
134	GO:0006468: protein phosphorylation	2.88E-02
135	GO:0000271: polysaccharide biosynthetic process	3.13E-02
136	GO:0000413: protein peptidyl-prolyl isomerization	3.13E-02
137	GO:0000226: microtubule cytoskeleton organization	3.13E-02
138	GO:0051301: cell division	3.21E-02
139	GO:0009958: positive gravitropism	3.30E-02
140	GO:0010182: sugar mediated signaling pathway	3.30E-02
141	GO:0009741: response to brassinosteroid	3.30E-02
142	GO:0045489: pectin biosynthetic process	3.30E-02
143	GO:0010305: leaf vascular tissue pattern formation	3.30E-02
144	GO:0048825: cotyledon development	3.66E-02
145	GO:0009749: response to glucose	3.66E-02
146	GO:0071554: cell wall organization or biogenesis	3.83E-02
147	GO:0002229: defense response to oomycetes	3.83E-02
148	GO:0030163: protein catabolic process	4.21E-02
149	GO:0009639: response to red or far red light	4.40E-02
150	GO:0006464: cellular protein modification process	4.40E-02
151	GO:0009828: plant-type cell wall loosening	4.40E-02
152	GO:0000910: cytokinesis	4.78E-02
153	GO:0010027: thylakoid membrane organization	4.98E-02
154	GO:0016126: sterol biosynthetic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0004818: glutamate-tRNA ligase activity	3.78E-04
5	GO:0008568: microtubule-severing ATPase activity	3.78E-04
6	GO:0004832: valine-tRNA ligase activity	3.78E-04
7	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.78E-04
8	GO:0000829: inositol heptakisphosphate kinase activity	3.78E-04
9	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.78E-04
10	GO:0008836: diaminopimelate decarboxylase activity	3.78E-04
11	GO:0000828: inositol hexakisphosphate kinase activity	3.78E-04
12	GO:0019156: isoamylase activity	8.22E-04
13	GO:0017118: lipoyltransferase activity	8.22E-04
14	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.22E-04
15	GO:0010296: prenylcysteine methylesterase activity	8.22E-04
16	GO:0016415: octanoyltransferase activity	8.22E-04
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.22E-04
18	GO:0008805: carbon-monoxide oxygenase activity	8.22E-04
19	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.33E-03
20	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.33E-03
21	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.85E-03
22	GO:0045544: gibberellin 20-oxidase activity	1.92E-03
23	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.92E-03
24	GO:0004871: signal transducer activity	2.40E-03
25	GO:0004930: G-protein coupled receptor activity	2.58E-03
26	GO:0010011: auxin binding	2.58E-03
27	GO:0003727: single-stranded RNA binding	3.14E-03
28	GO:0008725: DNA-3-methyladenine glycosylase activity	3.30E-03
29	GO:0008374: O-acyltransferase activity	3.30E-03
30	GO:0030332: cyclin binding	4.08E-03
31	GO:0004556: alpha-amylase activity	4.08E-03
32	GO:0030983: mismatched DNA binding	4.08E-03
33	GO:0004709: MAP kinase kinase kinase activity	4.08E-03
34	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	4.08E-03
35	GO:0043565: sequence-specific DNA binding	4.29E-03
36	GO:0016832: aldehyde-lyase activity	4.92E-03
37	GO:0004518: nuclease activity	5.23E-03
38	GO:0016759: cellulose synthase activity	5.94E-03
39	GO:0004222: metalloendopeptidase activity	1.02E-02
40	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.29E-02
41	GO:0000049: tRNA binding	1.34E-02
42	GO:0004519: endonuclease activity	1.37E-02
43	GO:0003725: double-stranded RNA binding	1.47E-02
44	GO:0043621: protein self-association	1.65E-02
45	GO:0005217: intracellular ligand-gated ion channel activity	1.74E-02
46	GO:0008061: chitin binding	1.74E-02
47	GO:0003712: transcription cofactor activity	1.74E-02
48	GO:0004970: ionotropic glutamate receptor activity	1.74E-02
49	GO:0004190: aspartic-type endopeptidase activity	1.74E-02
50	GO:0008134: transcription factor binding	2.02E-02
51	GO:0005345: purine nucleobase transmembrane transporter activity	2.17E-02
52	GO:0033612: receptor serine/threonine kinase binding	2.32E-02
53	GO:0008408: 3'-5' exonuclease activity	2.32E-02
54	GO:0010333: terpene synthase activity	2.32E-02
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.48E-02
56	GO:0030570: pectate lyase activity	2.64E-02
57	GO:0016760: cellulose synthase (UDP-forming) activity	2.64E-02
58	GO:0004812: aminoacyl-tRNA ligase activity	2.96E-02
59	GO:0005199: structural constituent of cell wall	3.30E-02
60	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.30E-02
61	GO:0016853: isomerase activity	3.48E-02
62	GO:0019843: rRNA binding	3.66E-02
63	GO:0004722: protein serine/threonine phosphatase activity	3.69E-02
64	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.83E-02
65	GO:0003684: damaged DNA binding	4.40E-02
66	GO:0016791: phosphatase activity	4.40E-02
67	GO:0046983: protein dimerization activity	4.69E-02
68	GO:0016413: O-acetyltransferase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0031224: intrinsic component of membrane	0.00E+00
4	GO:0000791: euchromatin	3.78E-04
5	GO:0030870: Mre11 complex	8.22E-04
6	GO:0009569: chloroplast starch grain	8.22E-04
7	GO:0008287: protein serine/threonine phosphatase complex	1.33E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.92E-03
9	GO:0009531: secondary cell wall	1.92E-03
10	GO:0000795: synaptonemal complex	3.30E-03
11	GO:0009508: plastid chromosome	1.47E-02
12	GO:0030095: chloroplast photosystem II	1.60E-02
13	GO:0009507: chloroplast	1.71E-02
14	GO:0005875: microtubule associated complex	1.88E-02
15	GO:0009654: photosystem II oxygen evolving complex	2.17E-02
16	GO:0016021: integral component of membrane	3.11E-02
17	GO:0019898: extrinsic component of membrane	3.66E-02
18	GO:0009504: cell plate	3.66E-02
19	GO:0016592: mediator complex	4.02E-02
20	GO:0000785: chromatin	4.02E-02
21	GO:0009295: nucleoid	4.59E-02
22	GO:0030529: intracellular ribonucleoprotein complex	4.98E-02