Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002764: immune response-regulating signaling pathway0.00E+00
2GO:0019481: L-alanine catabolic process, by transamination0.00E+00
3GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
4GO:0009312: oligosaccharide biosynthetic process0.00E+00
5GO:0032491: detection of molecule of fungal origin0.00E+00
6GO:0009268: response to pH0.00E+00
7GO:0032499: detection of peptidoglycan0.00E+00
8GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
9GO:0006468: protein phosphorylation5.00E-06
10GO:0031930: mitochondria-nucleus signaling pathway6.84E-05
11GO:0010204: defense response signaling pathway, resistance gene-independent1.47E-04
12GO:0018105: peptidyl-serine phosphorylation1.58E-04
13GO:0019673: GDP-mannose metabolic process1.60E-04
14GO:0006562: proline catabolic process1.60E-04
15GO:0032469: endoplasmic reticulum calcium ion homeostasis1.60E-04
16GO:0046777: protein autophosphorylation1.89E-04
17GO:0009751: response to salicylic acid3.43E-04
18GO:0002240: response to molecule of oomycetes origin3.65E-04
19GO:0031349: positive regulation of defense response3.65E-04
20GO:0045732: positive regulation of protein catabolic process3.65E-04
21GO:0043066: negative regulation of apoptotic process3.65E-04
22GO:0019725: cellular homeostasis3.65E-04
23GO:0010133: proline catabolic process to glutamate3.65E-04
24GO:0080185: effector dependent induction by symbiont of host immune response3.65E-04
25GO:0007034: vacuolar transport4.38E-04
26GO:0009266: response to temperature stimulus4.38E-04
27GO:0016045: detection of bacterium5.97E-04
28GO:0010359: regulation of anion channel activity5.97E-04
29GO:0061158: 3'-UTR-mediated mRNA destabilization5.97E-04
30GO:0042351: 'de novo' GDP-L-fucose biosynthetic process5.97E-04
31GO:0006486: protein glycosylation7.69E-04
32GO:0031348: negative regulation of defense response7.98E-04
33GO:0072583: clathrin-dependent endocytosis8.53E-04
34GO:0006537: glutamate biosynthetic process8.53E-04
35GO:0071323: cellular response to chitin8.53E-04
36GO:0036092: phosphatidylinositol-3-phosphate biosynthetic process8.53E-04
37GO:0006986: response to unfolded protein8.53E-04
38GO:0035556: intracellular signal transduction1.07E-03
39GO:0071219: cellular response to molecule of bacterial origin1.13E-03
40GO:0006952: defense response1.13E-03
41GO:0060548: negative regulation of cell death1.13E-03
42GO:0018344: protein geranylgeranylation1.43E-03
43GO:0009247: glycolipid biosynthetic process1.43E-03
44GO:0002238: response to molecule of fungal origin1.76E-03
45GO:0001731: formation of translation preinitiation complex1.76E-03
46GO:0009408: response to heat1.80E-03
47GO:0006904: vesicle docking involved in exocytosis1.84E-03
48GO:0009423: chorismate biosynthetic process2.11E-03
49GO:0070370: cellular heat acclimation2.48E-03
50GO:0009817: defense response to fungus, incompatible interaction2.69E-03
51GO:0006470: protein dephosphorylation2.80E-03
52GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline2.88E-03
53GO:0030162: regulation of proteolysis2.88E-03
54GO:0006491: N-glycan processing2.88E-03
55GO:0019375: galactolipid biosynthetic process2.88E-03
56GO:0045010: actin nucleation2.88E-03
57GO:0009787: regulation of abscisic acid-activated signaling pathway2.88E-03
58GO:0006499: N-terminal protein myristoylation2.96E-03
59GO:0030968: endoplasmic reticulum unfolded protein response3.29E-03
60GO:0009932: cell tip growth3.29E-03
61GO:0042742: defense response to bacterium3.36E-03
62GO:0009867: jasmonic acid mediated signaling pathway3.40E-03
63GO:0009737: response to abscisic acid3.85E-03
64GO:0009738: abscisic acid-activated signaling pathway4.11E-03
65GO:0043067: regulation of programmed cell death4.17E-03
66GO:0009870: defense response signaling pathway, resistance gene-dependent4.64E-03
67GO:0015031: protein transport5.11E-03
68GO:0009073: aromatic amino acid family biosynthetic process5.12E-03
69GO:0010200: response to chitin5.64E-03
70GO:0006626: protein targeting to mitochondrion6.14E-03
71GO:0018107: peptidyl-threonine phosphorylation6.14E-03
72GO:0002237: response to molecule of bacterial origin6.67E-03
73GO:0006446: regulation of translational initiation6.67E-03
74GO:0034605: cellular response to heat6.67E-03
75GO:0046854: phosphatidylinositol phosphorylation7.22E-03
76GO:0007033: vacuole organization7.22E-03
77GO:0009626: plant-type hypersensitive response7.40E-03
78GO:0009620: response to fungus7.64E-03
79GO:0034976: response to endoplasmic reticulum stress7.79E-03
80GO:0009863: salicylic acid mediated signaling pathway8.38E-03
81GO:0045333: cellular respiration8.38E-03
82GO:0080147: root hair cell development8.38E-03
83GO:0006487: protein N-linked glycosylation8.38E-03
84GO:2000022: regulation of jasmonic acid mediated signaling pathway1.02E-02
85GO:0009306: protein secretion1.15E-02
86GO:0009414: response to water deprivation1.21E-02
87GO:0007165: signal transduction1.21E-02
88GO:0051028: mRNA transport1.22E-02
89GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.22E-02
90GO:0006885: regulation of pH1.36E-02
91GO:0048544: recognition of pollen1.43E-02
92GO:0009739: response to gibberellin1.62E-02
93GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.62E-02
94GO:0007264: small GTPase mediated signal transduction1.65E-02
95GO:0009617: response to bacterium1.73E-02
96GO:0051607: defense response to virus1.97E-02
97GO:0009409: response to cold1.98E-02
98GO:0001666: response to hypoxia2.05E-02
99GO:0009615: response to virus2.05E-02
100GO:0009816: defense response to bacterium, incompatible interaction2.13E-02
101GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.13E-02
102GO:0009627: systemic acquired resistance2.22E-02
103GO:0006970: response to osmotic stress2.42E-02
104GO:0009813: flavonoid biosynthetic process2.56E-02
105GO:0009651: response to salt stress2.71E-02
106GO:0010119: regulation of stomatal movement2.74E-02
107GO:0010043: response to zinc ion2.74E-02
108GO:0007568: aging2.74E-02
109GO:0045087: innate immune response2.93E-02
110GO:0016192: vesicle-mediated transport2.93E-02
111GO:0006887: exocytosis3.31E-02
112GO:0045454: cell redox homeostasis3.34E-02
113GO:0051707: response to other organism3.51E-02
114GO:0042546: cell wall biogenesis3.61E-02
115GO:0006855: drug transmembrane transport3.91E-02
116GO:0032259: methylation3.94E-02
117GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.02E-02
118GO:0006812: cation transport4.12E-02
119GO:0042538: hyperosmotic salinity response4.12E-02
120GO:0006813: potassium ion transport4.34E-02
121GO:0009753: response to jasmonic acid4.40E-02
122GO:0016310: phosphorylation4.71E-02
RankGO TermAdjusted P value
1GO:0050220: prostaglandin-E synthase activity0.00E+00
2GO:0004107: chorismate synthase activity0.00E+00
3GO:0019010: farnesoic acid O-methyltransferase activity0.00E+00
4GO:2001080: chitosan binding0.00E+00
5GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
6GO:0005522: profilin binding0.00E+00
7GO:0016301: kinase activity1.52E-07
8GO:0019199: transmembrane receptor protein kinase activity2.01E-05
9GO:0005524: ATP binding2.29E-05
10GO:0004657: proline dehydrogenase activity1.60E-04
11GO:0046481: digalactosyldiacylglycerol synthase activity1.60E-04
12GO:0032050: clathrin heavy chain binding1.60E-04
13GO:1901149: salicylic acid binding1.60E-04
14GO:0004662: CAAX-protein geranylgeranyltransferase activity1.60E-04
15GO:0008446: GDP-mannose 4,6-dehydratase activity1.60E-04
16GO:0009931: calcium-dependent protein serine/threonine kinase activity2.26E-04
17GO:0004683: calmodulin-dependent protein kinase activity2.43E-04
18GO:0004674: protein serine/threonine kinase activity2.62E-04
19GO:0048531: beta-1,3-galactosyltransferase activity3.65E-04
20GO:0005509: calcium ion binding7.40E-04
21GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity8.53E-04
22GO:0035250: UDP-galactosyltransferase activity8.53E-04
23GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity8.53E-04
24GO:0009916: alternative oxidase activity1.13E-03
25GO:0004040: amidase activity1.43E-03
26GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.43E-03
27GO:0045431: flavonol synthase activity1.43E-03
28GO:0042578: phosphoric ester hydrolase activity1.76E-03
29GO:0003730: mRNA 3'-UTR binding2.11E-03
30GO:0004656: procollagen-proline 4-dioxygenase activity2.11E-03
31GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.11E-03
32GO:0004559: alpha-mannosidase activity2.11E-03
33GO:0008375: acetylglucosaminyltransferase activity2.30E-03
34GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.56E-03
35GO:0004430: 1-phosphatidylinositol 4-kinase activity3.29E-03
36GO:0071949: FAD binding3.72E-03
37GO:0005543: phospholipid binding5.12E-03
38GO:0008559: xenobiotic-transporting ATPase activity5.12E-03
39GO:0005515: protein binding5.44E-03
40GO:0008378: galactosyltransferase activity5.62E-03
41GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity5.62E-03
42GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism6.14E-03
43GO:0031072: heat shock protein binding6.14E-03
44GO:0005262: calcium channel activity6.14E-03
45GO:0031625: ubiquitin protein ligase binding6.51E-03
46GO:0004672: protein kinase activity6.57E-03
47GO:0008061: chitin binding7.22E-03
48GO:0004722: protein serine/threonine phosphatase activity7.64E-03
49GO:0005516: calmodulin binding8.02E-03
50GO:0031418: L-ascorbic acid binding8.38E-03
51GO:0015035: protein disulfide oxidoreductase activity8.62E-03
52GO:0051087: chaperone binding8.97E-03
53GO:0005525: GTP binding9.18E-03
54GO:0033612: receptor serine/threonine kinase binding9.59E-03
55GO:0044212: transcription regulatory region DNA binding1.26E-02
56GO:0005451: monovalent cation:proton antiporter activity1.29E-02
57GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.35E-02
58GO:0010181: FMN binding1.43E-02
59GO:0015299: solute:proton antiporter activity1.43E-02
60GO:0004872: receptor activity1.50E-02
61GO:0015385: sodium:proton antiporter activity1.73E-02
62GO:0051015: actin filament binding1.73E-02
63GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.85E-02
64GO:0043565: sequence-specific DNA binding2.10E-02
65GO:0043531: ADP binding2.47E-02
66GO:0015238: drug transmembrane transporter activity2.56E-02
67GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.93E-02
68GO:0046872: metal ion binding2.93E-02
69GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.34E-02
70GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.71E-02
71GO:0005198: structural molecule activity3.81E-02
72GO:0003924: GTPase activity4.11E-02
73GO:0009055: electron carrier activity4.40E-02
74GO:0045330: aspartyl esterase activity4.66E-02
75GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.99E-02
76GO:0005215: transporter activity4.99E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane9.36E-05
2GO:0005953: CAAX-protein geranylgeranyltransferase complex1.60E-04
3GO:0005911: cell-cell junction1.60E-04
4GO:0005654: nucleoplasm2.10E-04
5GO:0030139: endocytic vesicle5.97E-04
6GO:0016282: eukaryotic 43S preinitiation complex1.76E-03
7GO:0033290: eukaryotic 48S preinitiation complex2.11E-03
8GO:0000815: ESCRT III complex2.11E-03
9GO:0005794: Golgi apparatus4.04E-03
10GO:0030125: clathrin vesicle coat4.64E-03
11GO:0048471: perinuclear region of cytoplasm5.12E-03
12GO:0005635: nuclear envelope6.30E-03
13GO:0030176: integral component of endoplasmic reticulum membrane7.22E-03
14GO:0005795: Golgi stack7.22E-03
15GO:0012505: endomembrane system8.12E-03
16GO:0070469: respiratory chain8.97E-03
17GO:0005768: endosome1.07E-02
18GO:0005770: late endosome1.36E-02
19GO:0000145: exocyst1.65E-02
20GO:0071944: cell periphery1.73E-02
21GO:0000139: Golgi membrane1.98E-02
22GO:0016021: integral component of membrane2.34E-02
23GO:0019005: SCF ubiquitin ligase complex2.47E-02
24GO:0009707: chloroplast outer membrane2.47E-02
25GO:0005737: cytoplasm2.61E-02
26GO:0000325: plant-type vacuole2.74E-02
27GO:0031902: late endosome membrane3.31E-02
28GO:0090406: pollen tube3.51E-02
29GO:0005856: cytoskeleton3.81E-02
<
Gene type



Gene DE type