co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0097275: cellular ammonia homeostasis	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0051924: regulation of calcium ion transport	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0006066: alcohol metabolic process	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0016118: carotenoid catabolic process	0.00E+00
10	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:0009773: photosynthetic electron transport in photosystem I	7.68E-07
13	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.35E-05
14	GO:1901259: chloroplast rRNA processing	1.88E-04
15	GO:0043686: co-translational protein modification	3.04E-04
16	GO:0019276: UDP-N-acetylgalactosamine metabolic process	3.04E-04
17	GO:0043007: maintenance of rDNA	3.04E-04
18	GO:0010028: xanthophyll cycle	3.04E-04
19	GO:0034337: RNA folding	3.04E-04
20	GO:0006047: UDP-N-acetylglucosamine metabolic process	3.04E-04
21	GO:0080112: seed growth	3.04E-04
22	GO:0000476: maturation of 4.5S rRNA	3.04E-04
23	GO:0000967: rRNA 5'-end processing	3.04E-04
24	GO:1905039: carboxylic acid transmembrane transport	3.04E-04
25	GO:1905200: gibberellic acid transmembrane transport	3.04E-04
26	GO:0006353: DNA-templated transcription, termination	3.09E-04
27	GO:0055114: oxidation-reduction process	3.34E-04
28	GO:0009657: plastid organization	3.80E-04
29	GO:0032544: plastid translation	3.80E-04
30	GO:1901657: glycosyl compound metabolic process	4.73E-04
31	GO:0009658: chloroplast organization	6.24E-04
32	GO:0016122: xanthophyll metabolic process	6.66E-04
33	GO:0016121: carotene catabolic process	6.66E-04
34	GO:0034470: ncRNA processing	6.66E-04
35	GO:0006898: receptor-mediated endocytosis	6.66E-04
36	GO:0016124: xanthophyll catabolic process	6.66E-04
37	GO:0018026: peptidyl-lysine monomethylation	6.66E-04
38	GO:0042325: regulation of phosphorylation	6.66E-04
39	GO:0015995: chlorophyll biosynthetic process	7.89E-04
40	GO:0005977: glycogen metabolic process	1.08E-03
41	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.08E-03
42	GO:0006696: ergosterol biosynthetic process	1.08E-03
43	GO:0015979: photosynthesis	1.15E-03
44	GO:1902358: sulfate transmembrane transport	1.55E-03
45	GO:0045338: farnesyl diphosphate metabolic process	1.55E-03
46	GO:0006166: purine ribonucleoside salvage	1.55E-03
47	GO:0006020: inositol metabolic process	1.55E-03
48	GO:0009152: purine ribonucleotide biosynthetic process	1.55E-03
49	GO:0010601: positive regulation of auxin biosynthetic process	1.55E-03
50	GO:0046653: tetrahydrofolate metabolic process	1.55E-03
51	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.55E-03
52	GO:0006168: adenine salvage	1.55E-03
53	GO:0071786: endoplasmic reticulum tubular network organization	1.55E-03
54	GO:0006418: tRNA aminoacylation for protein translation	1.60E-03
55	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-03
56	GO:0010114: response to red light	1.66E-03
57	GO:0009765: photosynthesis, light harvesting	2.07E-03
58	GO:0015994: chlorophyll metabolic process	2.07E-03
59	GO:0006021: inositol biosynthetic process	2.07E-03
60	GO:0071483: cellular response to blue light	2.07E-03
61	GO:0010021: amylopectin biosynthetic process	2.07E-03
62	GO:0031365: N-terminal protein amino acid modification	2.65E-03
63	GO:0044209: AMP salvage	2.65E-03
64	GO:0006656: phosphatidylcholine biosynthetic process	2.65E-03
65	GO:0032543: mitochondrial translation	2.65E-03
66	GO:0006564: L-serine biosynthetic process	2.65E-03
67	GO:0009904: chloroplast accumulation movement	2.65E-03
68	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.27E-03
69	GO:1902456: regulation of stomatal opening	3.27E-03
70	GO:0010190: cytochrome b6f complex assembly	3.27E-03
71	GO:0046855: inositol phosphate dephosphorylation	3.27E-03
72	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.27E-03
73	GO:0019252: starch biosynthetic process	3.31E-03
74	GO:0032502: developmental process	3.79E-03
75	GO:0071333: cellular response to glucose stimulus	3.93E-03
76	GO:0009955: adaxial/abaxial pattern specification	3.93E-03
77	GO:0048280: vesicle fusion with Golgi apparatus	3.93E-03
78	GO:0009903: chloroplast avoidance movement	3.93E-03
79	GO:0005975: carbohydrate metabolic process	4.17E-03
80	GO:1900056: negative regulation of leaf senescence	4.64E-03
81	GO:0048437: floral organ development	4.64E-03
82	GO:0010196: nonphotochemical quenching	4.64E-03
83	GO:0008272: sulfate transport	4.64E-03
84	GO:0009769: photosynthesis, light harvesting in photosystem II	4.64E-03
85	GO:0009645: response to low light intensity stimulus	4.64E-03
86	GO:0016126: sterol biosynthetic process	5.13E-03
87	GO:0052543: callose deposition in cell wall	5.39E-03
88	GO:0042255: ribosome assembly	5.39E-03
89	GO:0010078: maintenance of root meristem identity	5.39E-03
90	GO:0043562: cellular response to nitrogen levels	6.18E-03
91	GO:0015996: chlorophyll catabolic process	6.18E-03
92	GO:0046685: response to arsenic-containing substance	7.01E-03
93	GO:0006098: pentose-phosphate shunt	7.01E-03
94	GO:0009821: alkaloid biosynthetic process	7.01E-03
95	GO:0005982: starch metabolic process	7.87E-03
96	GO:0010380: regulation of chlorophyll biosynthetic process	7.87E-03
97	GO:0009641: shade avoidance	8.77E-03
98	GO:0006896: Golgi to vacuole transport	8.77E-03
99	GO:0009684: indoleacetic acid biosynthetic process	9.71E-03
100	GO:0015770: sucrose transport	9.71E-03
101	GO:0006415: translational termination	9.71E-03
102	GO:0072593: reactive oxygen species metabolic process	9.71E-03
103	GO:0006790: sulfur compound metabolic process	1.07E-02
104	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
105	GO:0006094: gluconeogenesis	1.17E-02
106	GO:0010588: cotyledon vascular tissue pattern formation	1.17E-02
107	GO:0030048: actin filament-based movement	1.17E-02
108	GO:0048467: gynoecium development	1.27E-02
109	GO:0007015: actin filament organization	1.27E-02
110	GO:0010223: secondary shoot formation	1.27E-02
111	GO:0046854: phosphatidylinositol phosphorylation	1.38E-02
112	GO:0009901: anther dehiscence	1.38E-02
113	GO:0019853: L-ascorbic acid biosynthetic process	1.38E-02
114	GO:0006636: unsaturated fatty acid biosynthetic process	1.49E-02
115	GO:0080147: root hair cell development	1.60E-02
116	GO:0048367: shoot system development	1.81E-02
117	GO:0019915: lipid storage	1.84E-02
118	GO:0009269: response to desiccation	1.84E-02
119	GO:0035556: intracellular signal transduction	1.89E-02
120	GO:0019748: secondary metabolic process	1.96E-02
121	GO:0016226: iron-sulfur cluster assembly	1.96E-02
122	GO:0006730: one-carbon metabolic process	1.96E-02
123	GO:0030433: ubiquitin-dependent ERAD pathway	1.96E-02
124	GO:0009553: embryo sac development	2.05E-02
125	GO:0006012: galactose metabolic process	2.09E-02
126	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.09E-02
127	GO:0071215: cellular response to abscisic acid stimulus	2.09E-02
128	GO:0009306: protein secretion	2.22E-02
129	GO:0016117: carotenoid biosynthetic process	2.35E-02
130	GO:0042147: retrograde transport, endosome to Golgi	2.35E-02
131	GO:0010087: phloem or xylem histogenesis	2.48E-02
132	GO:0080022: primary root development	2.48E-02
133	GO:0015031: protein transport	2.52E-02
134	GO:0009741: response to brassinosteroid	2.62E-02
135	GO:0009958: positive gravitropism	2.62E-02
136	GO:0016042: lipid catabolic process	2.75E-02
137	GO:0009058: biosynthetic process	2.79E-02
138	GO:0009556: microsporogenesis	2.90E-02
139	GO:0009851: auxin biosynthetic process	2.90E-02
140	GO:0006623: protein targeting to vacuole	2.90E-02
141	GO:0048825: cotyledon development	2.90E-02
142	GO:0006891: intra-Golgi vesicle-mediated transport	3.04E-02
143	GO:0009630: gravitropism	3.19E-02
144	GO:0006810: transport	3.21E-02
145	GO:0008152: metabolic process	3.21E-02
146	GO:0006413: translational initiation	3.40E-02
147	GO:0009828: plant-type cell wall loosening	3.49E-02
148	GO:0010027: thylakoid membrane organization	3.95E-02
149	GO:0009607: response to biotic stimulus	4.11E-02
150	GO:0006906: vesicle fusion	4.27E-02
151	GO:0006888: ER to Golgi vesicle-mediated transport	4.44E-02
152	GO:0016311: dephosphorylation	4.60E-02
153	GO:0009817: defense response to fungus, incompatible interaction	4.77E-02
154	GO:0048481: plant ovule development	4.77E-02
155	GO:0018298: protein-chromophore linkage	4.77E-02
156	GO:0009813: flavonoid biosynthetic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0090711: FMN hydrolase activity	0.00E+00
8	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
9	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0080082: esculin beta-glucosidase activity	0.00E+00
14	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
15	GO:0004823: leucine-tRNA ligase activity	0.00E+00
16	GO:0002161: aminoacyl-tRNA editing activity	1.50E-05
17	GO:0071949: FAD binding	1.63E-05
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.01E-05
19	GO:0045486: naringenin 3-dioxygenase activity	3.04E-04
20	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	3.04E-04
21	GO:0080079: cellobiose glucosidase activity	3.04E-04
22	GO:1905201: gibberellin transmembrane transporter activity	3.04E-04
23	GO:0004856: xylulokinase activity	3.04E-04
24	GO:0042586: peptide deformylase activity	3.04E-04
25	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	3.04E-04
26	GO:0034256: chlorophyll(ide) b reductase activity	3.04E-04
27	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.04E-04
28	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.66E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	6.66E-04
30	GO:0052832: inositol monophosphate 3-phosphatase activity	6.66E-04
31	GO:0033201: alpha-1,4-glucan synthase activity	6.66E-04
32	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.66E-04
33	GO:0008934: inositol monophosphate 1-phosphatase activity	6.66E-04
34	GO:0052833: inositol monophosphate 4-phosphatase activity	6.66E-04
35	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.66E-04
36	GO:0019172: glyoxalase III activity	6.66E-04
37	GO:0019156: isoamylase activity	6.66E-04
38	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.66E-04
39	GO:0000234: phosphoethanolamine N-methyltransferase activity	6.66E-04
40	GO:0102483: scopolin beta-glucosidase activity	7.89E-04
41	GO:0016491: oxidoreductase activity	9.80E-04
42	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.08E-03
43	GO:0008864: formyltetrahydrofolate deformylase activity	1.08E-03
44	GO:0004373: glycogen (starch) synthase activity	1.08E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.08E-03
46	GO:0004751: ribose-5-phosphate isomerase activity	1.08E-03
47	GO:0031409: pigment binding	1.31E-03
48	GO:0008422: beta-glucosidase activity	1.34E-03
49	GO:0003999: adenine phosphoribosyltransferase activity	1.55E-03
50	GO:0016851: magnesium chelatase activity	1.55E-03
51	GO:0016149: translation release factor activity, codon specific	1.55E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	2.07E-03
53	GO:0009011: starch synthase activity	2.07E-03
54	GO:0003727: single-stranded RNA binding	2.28E-03
55	GO:0004812: aminoacyl-tRNA ligase activity	2.47E-03
56	GO:0016846: carbon-sulfur lyase activity	2.65E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.65E-03
58	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.65E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	3.27E-03
60	GO:0004629: phospholipase C activity	3.27E-03
61	GO:0004556: alpha-amylase activity	3.27E-03
62	GO:0004462: lactoylglutathione lyase activity	3.27E-03
63	GO:0048038: quinone binding	3.55E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.93E-03
65	GO:0004435: phosphatidylinositol phospholipase C activity	3.93E-03
66	GO:0019843: rRNA binding	5.05E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	5.39E-03
68	GO:0016168: chlorophyll binding	5.42E-03
69	GO:0004252: serine-type endopeptidase activity	5.77E-03
70	GO:0008271: secondary active sulfate transmembrane transporter activity	6.18E-03
71	GO:0003747: translation release factor activity	7.01E-03
72	GO:0016844: strictosidine synthase activity	7.87E-03
73	GO:0003993: acid phosphatase activity	8.87E-03
74	GO:0000149: SNARE binding	9.27E-03
75	GO:0008559: xenobiotic-transporting ATPase activity	9.71E-03
76	GO:0047372: acylglycerol lipase activity	9.71E-03
77	GO:0008515: sucrose transmembrane transporter activity	9.71E-03
78	GO:0015116: sulfate transmembrane transporter activity	1.07E-02
79	GO:0000049: tRNA binding	1.07E-02
80	GO:0005484: SNAP receptor activity	1.10E-02
81	GO:0004672: protein kinase activity	1.14E-02
82	GO:0004089: carbonate dehydratase activity	1.17E-02
83	GO:0031072: heat shock protein binding	1.17E-02
84	GO:0019888: protein phosphatase regulator activity	1.17E-02
85	GO:0003725: double-stranded RNA binding	1.17E-02
86	GO:0004022: alcohol dehydrogenase (NAD) activity	1.17E-02
87	GO:0043621: protein self-association	1.19E-02
88	GO:0003774: motor activity	1.27E-02
89	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.27E-02
90	GO:0051119: sugar transmembrane transporter activity	1.38E-02
91	GO:0051536: iron-sulfur cluster binding	1.60E-02
92	GO:0031418: L-ascorbic acid binding	1.60E-02
93	GO:0004497: monooxygenase activity	1.75E-02
94	GO:0016779: nucleotidyltransferase activity	1.96E-02
95	GO:0004871: signal transducer activity	2.32E-02
96	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.64E-02
97	GO:0008565: protein transporter activity	3.17E-02
98	GO:0016597: amino acid binding	3.79E-02
99	GO:0003743: translation initiation factor activity	4.26E-02
100	GO:0008236: serine-type peptidase activity	4.60E-02
101	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.55E-27
2	GO:0009535: chloroplast thylakoid membrane	4.04E-13
3	GO:0009534: chloroplast thylakoid	2.16E-11
4	GO:0009570: chloroplast stroma	1.47E-10
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.16E-09
6	GO:0009941: chloroplast envelope	1.23E-05
7	GO:0009543: chloroplast thylakoid lumen	1.54E-05
8	GO:0031977: thylakoid lumen	1.71E-05
9	GO:0009579: thylakoid	2.19E-05
10	GO:0031969: chloroplast membrane	2.63E-05
11	GO:0010287: plastoglobule	8.53E-04
12	GO:0010007: magnesium chelatase complex	1.08E-03
13	GO:0033281: TAT protein transport complex	1.08E-03
14	GO:0030076: light-harvesting complex	1.18E-03
15	GO:0030658: transport vesicle membrane	1.55E-03
16	GO:0071782: endoplasmic reticulum tubular network	1.55E-03
17	GO:0042651: thylakoid membrane	1.60E-03
18	GO:0009517: PSII associated light-harvesting complex II	2.07E-03
19	GO:0009840: chloroplastic endopeptidase Clp complex	3.93E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	5.39E-03
21	GO:0009501: amyloplast	5.39E-03
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.39E-03
23	GO:0031982: vesicle	5.39E-03
24	GO:0005763: mitochondrial small ribosomal subunit	7.01E-03
25	GO:0031901: early endosome membrane	7.01E-03
26	GO:0016459: myosin complex	8.77E-03
27	GO:0000159: protein phosphatase type 2A complex	9.71E-03
28	GO:0031201: SNARE complex	1.01E-02
29	GO:0032040: small-subunit processome	1.07E-02
30	GO:0009508: plastid chromosome	1.17E-02
31	GO:0005789: endoplasmic reticulum membrane	1.23E-02
32	GO:0030095: chloroplast photosystem II	1.27E-02
33	GO:0009654: photosystem II oxygen evolving complex	1.72E-02
34	GO:0015935: small ribosomal subunit	1.84E-02
35	GO:0009532: plastid stroma	1.84E-02
36	GO:0005623: cell	2.72E-02
37	GO:0009522: photosystem I	2.76E-02
38	GO:0009523: photosystem II	2.90E-02
39	GO:0019898: extrinsic component of membrane	2.90E-02
40	GO:0009295: nucleoid	3.64E-02