GO Enrichment Analysis of Co-expressed Genes with
AT4G04840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 2 | GO:0015995: chlorophyll biosynthetic process | 7.25E-11 |
| 3 | GO:0015979: photosynthesis | 5.07E-08 |
| 4 | GO:0010196: nonphotochemical quenching | 7.11E-07 |
| 5 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 9.18E-07 |
| 6 | GO:0010206: photosystem II repair | 2.29E-06 |
| 7 | GO:0006000: fructose metabolic process | 3.44E-06 |
| 8 | GO:0090391: granum assembly | 3.44E-06 |
| 9 | GO:0005983: starch catabolic process | 6.99E-06 |
| 10 | GO:0010021: amylopectin biosynthetic process | 1.51E-05 |
| 11 | GO:0006002: fructose 6-phosphate metabolic process | 1.14E-04 |
| 12 | GO:0000023: maltose metabolic process | 1.35E-04 |
| 13 | GO:0000025: maltose catabolic process | 1.35E-04 |
| 14 | GO:0009090: homoserine biosynthetic process | 1.35E-04 |
| 15 | GO:0009773: photosynthetic electron transport in photosystem I | 2.34E-04 |
| 16 | GO:0055114: oxidation-reduction process | 2.94E-04 |
| 17 | GO:0006094: gluconeogenesis | 3.08E-04 |
| 18 | GO:0005986: sucrose biosynthetic process | 3.08E-04 |
| 19 | GO:0010353: response to trehalose | 3.11E-04 |
| 20 | GO:0015804: neutral amino acid transport | 3.11E-04 |
| 21 | GO:0006898: receptor-mediated endocytosis | 3.11E-04 |
| 22 | GO:0005976: polysaccharide metabolic process | 3.11E-04 |
| 23 | GO:0010207: photosystem II assembly | 3.49E-04 |
| 24 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.36E-04 |
| 25 | GO:0006518: peptide metabolic process | 5.13E-04 |
| 26 | GO:0061077: chaperone-mediated protein folding | 5.84E-04 |
| 27 | GO:0009067: aspartate family amino acid biosynthetic process | 7.34E-04 |
| 28 | GO:0071484: cellular response to light intensity | 7.34E-04 |
| 29 | GO:0006109: regulation of carbohydrate metabolic process | 9.73E-04 |
| 30 | GO:0071483: cellular response to blue light | 9.73E-04 |
| 31 | GO:0019252: starch biosynthetic process | 1.08E-03 |
| 32 | GO:0032259: methylation | 1.18E-03 |
| 33 | GO:0009904: chloroplast accumulation movement | 1.23E-03 |
| 34 | GO:0006656: phosphatidylcholine biosynthetic process | 1.23E-03 |
| 35 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.51E-03 |
| 36 | GO:0006633: fatty acid biosynthetic process | 1.56E-03 |
| 37 | GO:0010027: thylakoid membrane organization | 1.64E-03 |
| 38 | GO:0009903: chloroplast avoidance movement | 1.81E-03 |
| 39 | GO:0009088: threonine biosynthetic process | 1.81E-03 |
| 40 | GO:0016311: dephosphorylation | 2.03E-03 |
| 41 | GO:0009610: response to symbiotic fungus | 2.12E-03 |
| 42 | GO:0009772: photosynthetic electron transport in photosystem II | 2.12E-03 |
| 43 | GO:0019827: stem cell population maintenance | 2.46E-03 |
| 44 | GO:0005978: glycogen biosynthetic process | 2.46E-03 |
| 45 | GO:0009642: response to light intensity | 2.46E-03 |
| 46 | GO:0009631: cold acclimation | 2.46E-03 |
| 47 | GO:0015996: chlorophyll catabolic process | 2.81E-03 |
| 48 | GO:0006754: ATP biosynthetic process | 3.17E-03 |
| 49 | GO:0005982: starch metabolic process | 3.55E-03 |
| 50 | GO:0010205: photoinhibition | 3.55E-03 |
| 51 | GO:0009086: methionine biosynthetic process | 3.55E-03 |
| 52 | GO:0009641: shade avoidance | 3.95E-03 |
| 53 | GO:0009750: response to fructose | 4.36E-03 |
| 54 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.36E-03 |
| 55 | GO:0043085: positive regulation of catalytic activity | 4.36E-03 |
| 56 | GO:0045454: cell redox homeostasis | 5.04E-03 |
| 57 | GO:0018107: peptidyl-threonine phosphorylation | 5.22E-03 |
| 58 | GO:0007015: actin filament organization | 5.68E-03 |
| 59 | GO:0010223: secondary shoot formation | 5.68E-03 |
| 60 | GO:0009266: response to temperature stimulus | 5.68E-03 |
| 61 | GO:0010143: cutin biosynthetic process | 5.68E-03 |
| 62 | GO:0019253: reductive pentose-phosphate cycle | 5.68E-03 |
| 63 | GO:0005985: sucrose metabolic process | 6.14E-03 |
| 64 | GO:0010025: wax biosynthetic process | 6.62E-03 |
| 65 | GO:0003333: amino acid transmembrane transport | 8.14E-03 |
| 66 | GO:0051260: protein homooligomerization | 8.14E-03 |
| 67 | GO:0019748: secondary metabolic process | 8.67E-03 |
| 68 | GO:0070417: cellular response to cold | 1.03E-02 |
| 69 | GO:0006606: protein import into nucleus | 1.09E-02 |
| 70 | GO:0006662: glycerol ether metabolic process | 1.15E-02 |
| 71 | GO:0009741: response to brassinosteroid | 1.15E-02 |
| 72 | GO:0015986: ATP synthesis coupled proton transport | 1.21E-02 |
| 73 | GO:0009735: response to cytokinin | 1.22E-02 |
| 74 | GO:1901657: glycosyl compound metabolic process | 1.46E-02 |
| 75 | GO:0006810: transport | 1.57E-02 |
| 76 | GO:0009658: chloroplast organization | 1.78E-02 |
| 77 | GO:0000160: phosphorelay signal transduction system | 2.17E-02 |
| 78 | GO:0009813: flavonoid biosynthetic process | 2.17E-02 |
| 79 | GO:0010311: lateral root formation | 2.17E-02 |
| 80 | GO:0080167: response to karrikin | 2.21E-02 |
| 81 | GO:0007568: aging | 2.32E-02 |
| 82 | GO:0006865: amino acid transport | 2.40E-02 |
| 83 | GO:0034599: cellular response to oxidative stress | 2.56E-02 |
| 84 | GO:0006631: fatty acid metabolic process | 2.80E-02 |
| 85 | GO:0006629: lipid metabolic process | 3.26E-02 |
| 86 | GO:0006979: response to oxidative stress | 3.34E-02 |
| 87 | GO:0006812: cation transport | 3.49E-02 |
| 88 | GO:0006364: rRNA processing | 3.67E-02 |
| 89 | GO:0006813: potassium ion transport | 3.67E-02 |
| 90 | GO:0009736: cytokinin-activated signaling pathway | 3.67E-02 |
| 91 | GO:0010224: response to UV-B | 3.76E-02 |
| 92 | GO:0043086: negative regulation of catalytic activity | 4.13E-02 |
| 93 | GO:0018105: peptidyl-serine phosphorylation | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 2 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 3 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 5 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 7 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 8 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 9 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 10 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 11 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 9.18E-07 |
| 12 | GO:0016851: magnesium chelatase activity | 8.07E-06 |
| 13 | GO:0045486: naringenin 3-dioxygenase activity | 1.35E-04 |
| 14 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.35E-04 |
| 15 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.35E-04 |
| 16 | GO:0080079: cellobiose glucosidase activity | 1.35E-04 |
| 17 | GO:0050521: alpha-glucan, water dikinase activity | 1.35E-04 |
| 18 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.35E-04 |
| 19 | GO:0045485: omega-6 fatty acid desaturase activity | 1.35E-04 |
| 20 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 1.35E-04 |
| 21 | GO:0004134: 4-alpha-glucanotransferase activity | 1.35E-04 |
| 22 | GO:0034256: chlorophyll(ide) b reductase activity | 1.35E-04 |
| 23 | GO:0016491: oxidoreductase activity | 2.23E-04 |
| 24 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.11E-04 |
| 25 | GO:0015172: acidic amino acid transmembrane transporter activity | 3.11E-04 |
| 26 | GO:0042389: omega-3 fatty acid desaturase activity | 3.11E-04 |
| 27 | GO:0010297: heteropolysaccharide binding | 3.11E-04 |
| 28 | GO:0033201: alpha-1,4-glucan synthase activity | 3.11E-04 |
| 29 | GO:0004412: homoserine dehydrogenase activity | 3.11E-04 |
| 30 | GO:0018708: thiol S-methyltransferase activity | 3.11E-04 |
| 31 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.11E-04 |
| 32 | GO:0016630: protochlorophyllide reductase activity | 3.11E-04 |
| 33 | GO:0005528: FK506 binding | 4.84E-04 |
| 34 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.13E-04 |
| 35 | GO:0043169: cation binding | 5.13E-04 |
| 36 | GO:0004373: glycogen (starch) synthase activity | 5.13E-04 |
| 37 | GO:0004072: aspartate kinase activity | 7.34E-04 |
| 38 | GO:0019201: nucleotide kinase activity | 7.34E-04 |
| 39 | GO:0015175: neutral amino acid transmembrane transporter activity | 7.34E-04 |
| 40 | GO:0009011: starch synthase activity | 9.73E-04 |
| 41 | GO:0008200: ion channel inhibitor activity | 1.51E-03 |
| 42 | GO:2001070: starch binding | 1.51E-03 |
| 43 | GO:0102391: decanoate--CoA ligase activity | 1.81E-03 |
| 44 | GO:0004017: adenylate kinase activity | 1.81E-03 |
| 45 | GO:0004602: glutathione peroxidase activity | 1.81E-03 |
| 46 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.12E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 2.46E-03 |
| 48 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.81E-03 |
| 49 | GO:0008168: methyltransferase activity | 2.91E-03 |
| 50 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 3.55E-03 |
| 51 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.75E-03 |
| 52 | GO:0030234: enzyme regulator activity | 3.95E-03 |
| 53 | GO:0008047: enzyme activator activity | 3.95E-03 |
| 54 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.04E-03 |
| 55 | GO:0044183: protein binding involved in protein folding | 4.36E-03 |
| 56 | GO:0047372: acylglycerol lipase activity | 4.36E-03 |
| 57 | GO:0015386: potassium:proton antiporter activity | 4.36E-03 |
| 58 | GO:0031072: heat shock protein binding | 5.22E-03 |
| 59 | GO:0004565: beta-galactosidase activity | 5.22E-03 |
| 60 | GO:0015035: protein disulfide oxidoreductase activity | 6.82E-03 |
| 61 | GO:0031418: L-ascorbic acid binding | 7.11E-03 |
| 62 | GO:0004857: enzyme inhibitor activity | 7.11E-03 |
| 63 | GO:0015079: potassium ion transmembrane transporter activity | 7.62E-03 |
| 64 | GO:0003756: protein disulfide isomerase activity | 9.77E-03 |
| 65 | GO:0047134: protein-disulfide reductase activity | 1.03E-02 |
| 66 | GO:0005249: voltage-gated potassium channel activity | 1.09E-02 |
| 67 | GO:0008536: Ran GTPase binding | 1.15E-02 |
| 68 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.15E-02 |
| 69 | GO:0004791: thioredoxin-disulfide reductase activity | 1.21E-02 |
| 70 | GO:0048038: quinone binding | 1.34E-02 |
| 71 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.46E-02 |
| 72 | GO:0000156: phosphorelay response regulator activity | 1.46E-02 |
| 73 | GO:0016597: amino acid binding | 1.66E-02 |
| 74 | GO:0016788: hydrolase activity, acting on ester bonds | 1.81E-02 |
| 75 | GO:0102483: scopolin beta-glucosidase activity | 1.95E-02 |
| 76 | GO:0004222: metalloendopeptidase activity | 2.24E-02 |
| 77 | GO:0003746: translation elongation factor activity | 2.48E-02 |
| 78 | GO:0003993: acid phosphatase activity | 2.56E-02 |
| 79 | GO:0008422: beta-glucosidase activity | 2.64E-02 |
| 80 | GO:0050661: NADP binding | 2.72E-02 |
| 81 | GO:0016787: hydrolase activity | 2.75E-02 |
| 82 | GO:0004185: serine-type carboxypeptidase activity | 2.97E-02 |
| 83 | GO:0015293: symporter activity | 3.23E-02 |
| 84 | GO:0015171: amino acid transmembrane transporter activity | 3.95E-02 |
| 85 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.23E-02 |
| 86 | GO:0051082: unfolded protein binding | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.53E-34 |
| 3 | GO:0009534: chloroplast thylakoid | 7.73E-34 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.58E-26 |
| 5 | GO:0009941: chloroplast envelope | 4.50E-15 |
| 6 | GO:0009570: chloroplast stroma | 1.03E-09 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.83E-08 |
| 8 | GO:0009579: thylakoid | 1.99E-07 |
| 9 | GO:0010007: magnesium chelatase complex | 3.44E-06 |
| 10 | GO:0031977: thylakoid lumen | 2.44E-05 |
| 11 | GO:0009501: amyloplast | 9.09E-05 |
| 12 | GO:0009706: chloroplast inner membrane | 9.92E-05 |
| 13 | GO:0031969: chloroplast membrane | 1.02E-04 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.40E-04 |
| 15 | GO:0031357: integral component of chloroplast inner membrane | 3.11E-04 |
| 16 | GO:0042651: thylakoid membrane | 5.33E-04 |
| 17 | GO:0008076: voltage-gated potassium channel complex | 7.34E-04 |
| 18 | GO:0009544: chloroplast ATP synthase complex | 9.73E-04 |
| 19 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.51E-03 |
| 20 | GO:0009538: photosystem I reaction center | 2.46E-03 |
| 21 | GO:0031982: vesicle | 2.46E-03 |
| 22 | GO:0030095: chloroplast photosystem II | 5.68E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 7.62E-03 |
| 24 | GO:0010287: plastoglobule | 7.85E-03 |
| 25 | GO:0019898: extrinsic component of membrane | 1.27E-02 |
| 26 | GO:0010319: stromule | 1.60E-02 |
| 27 | GO:0009707: chloroplast outer membrane | 2.09E-02 |