co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
5	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0032206: positive regulation of telomere maintenance	0.00E+00
10	GO:0006907: pinocytosis	0.00E+00
11	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
12	GO:0019685: photosynthesis, dark reaction	0.00E+00
13	GO:0009926: auxin polar transport	1.96E-05
14	GO:0009733: response to auxin	2.61E-05
15	GO:0046620: regulation of organ growth	4.05E-05
16	GO:0009734: auxin-activated signaling pathway	1.53E-04
17	GO:0010583: response to cyclopentenone	1.98E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.94E-04
19	GO:0034757: negative regulation of iron ion transport	5.83E-04
20	GO:0045786: negative regulation of cell cycle	5.83E-04
21	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.83E-04
22	GO:0019478: D-amino acid catabolic process	5.83E-04
23	GO:0032958: inositol phosphate biosynthetic process	5.83E-04
24	GO:0010070: zygote asymmetric cell division	5.83E-04
25	GO:0043087: regulation of GTPase activity	5.83E-04
26	GO:0043609: regulation of carbon utilization	5.83E-04
27	GO:0051013: microtubule severing	5.83E-04
28	GO:0009686: gibberellin biosynthetic process	6.97E-04
29	GO:0000373: Group II intron splicing	1.17E-03
30	GO:0043039: tRNA aminoacylation	1.25E-03
31	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.25E-03
32	GO:0061062: regulation of nematode larval development	1.25E-03
33	GO:0010271: regulation of chlorophyll catabolic process	1.25E-03
34	GO:0001736: establishment of planar polarity	1.25E-03
35	GO:0009786: regulation of asymmetric cell division	1.25E-03
36	GO:0010024: phytochromobilin biosynthetic process	1.25E-03
37	GO:0048829: root cap development	1.61E-03
38	GO:0006000: fructose metabolic process	2.06E-03
39	GO:0080117: secondary growth	2.06E-03
40	GO:0071398: cellular response to fatty acid	2.06E-03
41	GO:0048575: short-day photoperiodism, flowering	2.06E-03
42	GO:0045910: negative regulation of DNA recombination	2.06E-03
43	GO:0090506: axillary shoot meristem initiation	2.06E-03
44	GO:0005983: starch catabolic process	2.14E-03
45	GO:0045037: protein import into chloroplast stroma	2.14E-03
46	GO:0010582: floral meristem determinacy	2.14E-03
47	GO:0010540: basipetal auxin transport	2.75E-03
48	GO:0051639: actin filament network formation	3.00E-03
49	GO:0034059: response to anoxia	3.00E-03
50	GO:1990019: protein storage vacuole organization	3.00E-03
51	GO:2001141: regulation of RNA biosynthetic process	3.00E-03
52	GO:0010371: regulation of gibberellin biosynthetic process	3.00E-03
53	GO:0006020: inositol metabolic process	3.00E-03
54	GO:0051513: regulation of monopolar cell growth	3.00E-03
55	GO:0009825: multidimensional cell growth	3.08E-03
56	GO:0006863: purine nucleobase transport	3.44E-03
57	GO:0051764: actin crosslink formation	4.04E-03
58	GO:0006021: inositol biosynthetic process	4.04E-03
59	GO:0009956: radial pattern formation	4.04E-03
60	GO:0009755: hormone-mediated signaling pathway	4.04E-03
61	GO:0010438: cellular response to sulfur starvation	5.19E-03
62	GO:0010158: abaxial cell fate specification	5.19E-03
63	GO:0080110: sporopollenin biosynthetic process	5.19E-03
64	GO:0009696: salicylic acid metabolic process	5.19E-03
65	GO:0045487: gibberellin catabolic process	5.19E-03
66	GO:0048497: maintenance of floral organ identity	5.19E-03
67	GO:0009107: lipoate biosynthetic process	5.19E-03
68	GO:0071555: cell wall organization	5.38E-03
69	GO:0040008: regulation of growth	6.25E-03
70	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	6.43E-03
71	GO:0010358: leaf shaping	6.43E-03
72	GO:0016554: cytidine to uridine editing	6.43E-03
73	GO:0009913: epidermal cell differentiation	6.43E-03
74	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.43E-03
75	GO:1902456: regulation of stomatal opening	6.43E-03
76	GO:0048831: regulation of shoot system development	6.43E-03
77	GO:0003006: developmental process involved in reproduction	6.43E-03
78	GO:0010942: positive regulation of cell death	6.43E-03
79	GO:0048827: phyllome development	6.43E-03
80	GO:0009793: embryo development ending in seed dormancy	7.08E-03
81	GO:0009958: positive gravitropism	7.65E-03
82	GO:0009741: response to brassinosteroid	7.65E-03
83	GO:0009942: longitudinal axis specification	7.77E-03
84	GO:0031930: mitochondria-nucleus signaling pathway	7.77E-03
85	GO:0048509: regulation of meristem development	7.77E-03
86	GO:0030488: tRNA methylation	7.77E-03
87	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	7.77E-03
88	GO:0010019: chloroplast-nucleus signaling pathway	7.77E-03
89	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.77E-03
90	GO:0048825: cotyledon development	8.84E-03
91	GO:0007050: cell cycle arrest	9.20E-03
92	GO:0010050: vegetative phase change	9.20E-03
93	GO:0010098: suspensor development	9.20E-03
94	GO:0010444: guard mother cell differentiation	9.20E-03
95	GO:0000082: G1/S transition of mitotic cell cycle	9.20E-03
96	GO:0009610: response to symbiotic fungus	9.20E-03
97	GO:0006955: immune response	9.20E-03
98	GO:0009416: response to light stimulus	9.37E-03
99	GO:0071554: cell wall organization or biogenesis	9.47E-03
100	GO:0031047: gene silencing by RNA	1.01E-02
101	GO:0032502: developmental process	1.01E-02
102	GO:0006402: mRNA catabolic process	1.07E-02
103	GO:0010439: regulation of glucosinolate biosynthetic process	1.07E-02
104	GO:0009819: drought recovery	1.07E-02
105	GO:0009850: auxin metabolic process	1.07E-02
106	GO:0009690: cytokinin metabolic process	1.07E-02
107	GO:2000070: regulation of response to water deprivation	1.07E-02
108	GO:0000105: histidine biosynthetic process	1.07E-02
109	GO:0006002: fructose 6-phosphate metabolic process	1.23E-02
110	GO:0071482: cellular response to light stimulus	1.23E-02
111	GO:0007186: G-protein coupled receptor signaling pathway	1.23E-02
112	GO:0010497: plasmodesmata-mediated intercellular transport	1.23E-02
113	GO:0009657: plastid organization	1.23E-02
114	GO:0032544: plastid translation	1.23E-02
115	GO:0007389: pattern specification process	1.23E-02
116	GO:0009624: response to nematode	1.33E-02
117	GO:0009911: positive regulation of flower development	1.38E-02
118	GO:0006098: pentose-phosphate shunt	1.40E-02
119	GO:0048507: meristem development	1.40E-02
120	GO:0048589: developmental growth	1.40E-02
121	GO:0009056: catabolic process	1.40E-02
122	GO:0051726: regulation of cell cycle	1.43E-02
123	GO:0000723: telomere maintenance	1.58E-02
124	GO:0042761: very long-chain fatty acid biosynthetic process	1.58E-02
125	GO:1900865: chloroplast RNA modification	1.58E-02
126	GO:0005982: starch metabolic process	1.58E-02
127	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.76E-02
128	GO:0006535: cysteine biosynthetic process from serine	1.76E-02
129	GO:0009641: shade avoidance	1.76E-02
130	GO:0006298: mismatch repair	1.76E-02
131	GO:0016441: posttranscriptional gene silencing	1.76E-02
132	GO:0010192: mucilage biosynthetic process	1.76E-02
133	GO:0009817: defense response to fungus, incompatible interaction	1.80E-02
134	GO:0009832: plant-type cell wall biogenesis	1.89E-02
135	GO:0010311: lateral root formation	1.89E-02
136	GO:0000160: phosphorelay signal transduction system	1.89E-02
137	GO:0009682: induced systemic resistance	1.95E-02
138	GO:0008285: negative regulation of cell proliferation	1.95E-02
139	GO:0006352: DNA-templated transcription, initiation	1.95E-02
140	GO:0009750: response to fructose	1.95E-02
141	GO:0048765: root hair cell differentiation	1.95E-02
142	GO:0006790: sulfur compound metabolic process	2.15E-02
143	GO:0010152: pollen maturation	2.15E-02
144	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.15E-02
145	GO:0009867: jasmonic acid mediated signaling pathway	2.29E-02
146	GO:0006468: protein phosphorylation	2.31E-02
147	GO:0010102: lateral root morphogenesis	2.36E-02
148	GO:2000028: regulation of photoperiodism, flowering	2.36E-02
149	GO:0010229: inflorescence development	2.36E-02
150	GO:0006094: gluconeogenesis	2.36E-02
151	GO:0048768: root hair cell tip growth	2.57E-02
152	GO:0048467: gynoecium development	2.57E-02
153	GO:0010207: photosystem II assembly	2.57E-02
154	GO:0010020: chloroplast fission	2.57E-02
155	GO:0009933: meristem structural organization	2.57E-02
156	GO:0010223: secondary shoot formation	2.57E-02
157	GO:0080188: RNA-directed DNA methylation	2.79E-02
158	GO:0046854: phosphatidylinositol phosphorylation	2.79E-02
159	GO:0007165: signal transduction	2.88E-02
160	GO:0009744: response to sucrose	2.95E-02
161	GO:0010025: wax biosynthetic process	3.01E-02
162	GO:0009833: plant-type primary cell wall biogenesis	3.01E-02
163	GO:0009739: response to gibberellin	3.05E-02
164	GO:0042546: cell wall biogenesis	3.07E-02
165	GO:0051301: cell division	3.12E-02
166	GO:0051017: actin filament bundle assembly	3.24E-02
167	GO:0005992: trehalose biosynthetic process	3.24E-02
168	GO:0019344: cysteine biosynthetic process	3.24E-02
169	GO:0009636: response to toxic substance	3.32E-02
170	GO:0009965: leaf morphogenesis	3.32E-02
171	GO:0006418: tRNA aminoacylation for protein translation	3.48E-02
172	GO:0043622: cortical microtubule organization	3.48E-02
173	GO:0009664: plant-type cell wall organization	3.70E-02
174	GO:0006306: DNA methylation	3.72E-02
175	GO:0003333: amino acid transmembrane transport	3.72E-02
176	GO:0016998: cell wall macromolecule catabolic process	3.72E-02
177	GO:0010431: seed maturation	3.72E-02
178	GO:0016226: iron-sulfur cluster assembly	3.97E-02
179	GO:0009736: cytokinin-activated signaling pathway	3.97E-02
180	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.22E-02
181	GO:0009693: ethylene biosynthetic process	4.22E-02
182	GO:0071215: cellular response to abscisic acid stimulus	4.22E-02
183	GO:0010082: regulation of root meristem growth	4.22E-02
184	GO:0001944: vasculature development	4.22E-02
185	GO:0009625: response to insect	4.22E-02
186	GO:0009826: unidimensional cell growth	4.35E-02
187	GO:0009909: regulation of flower development	4.39E-02
188	GO:0010584: pollen exine formation	4.48E-02
189	GO:0048443: stamen development	4.48E-02
190	GO:0010091: trichome branching	4.48E-02
191	GO:0006284: base-excision repair	4.48E-02
192	GO:0042127: regulation of cell proliferation	4.48E-02
193	GO:0009658: chloroplast organization	4.55E-02
194	GO:0070417: cellular response to cold	4.74E-02
195	GO:0048316: seed development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0004401: histidinol-phosphatase activity	0.00E+00
6	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
7	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
8	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
9	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
10	GO:0001872: (1->3)-beta-D-glucan binding	1.04E-04
11	GO:0010011: auxin binding	1.78E-04
12	GO:0005227: calcium activated cation channel activity	5.83E-04
13	GO:0042834: peptidoglycan binding	5.83E-04
14	GO:0000828: inositol hexakisphosphate kinase activity	5.83E-04
15	GO:0004831: tyrosine-tRNA ligase activity	5.83E-04
16	GO:0008568: microtubule-severing ATPase activity	5.83E-04
17	GO:0019203: carbohydrate phosphatase activity	5.83E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.83E-04
19	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	5.83E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.83E-04
21	GO:0010012: steroid 22-alpha hydroxylase activity	5.83E-04
22	GO:0000829: inositol heptakisphosphate kinase activity	5.83E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	1.25E-03
24	GO:0008805: carbon-monoxide oxygenase activity	1.25E-03
25	GO:0008934: inositol monophosphate 1-phosphatase activity	1.25E-03
26	GO:0052833: inositol monophosphate 4-phosphatase activity	1.25E-03
27	GO:0019156: isoamylase activity	1.25E-03
28	GO:0050736: O-malonyltransferase activity	1.25E-03
29	GO:0009884: cytokinin receptor activity	1.25E-03
30	GO:0050017: L-3-cyanoalanine synthase activity	1.25E-03
31	GO:0017118: lipoyltransferase activity	1.25E-03
32	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.25E-03
33	GO:0010296: prenylcysteine methylesterase activity	1.25E-03
34	GO:0016415: octanoyltransferase activity	1.25E-03
35	GO:0004047: aminomethyltransferase activity	1.25E-03
36	GO:0003913: DNA photolyase activity	2.06E-03
37	GO:0004557: alpha-galactosidase activity	2.06E-03
38	GO:0005034: osmosensor activity	2.06E-03
39	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.06E-03
40	GO:0052692: raffinose alpha-galactosidase activity	2.06E-03
41	GO:0004871: signal transducer activity	2.19E-03
42	GO:0030247: polysaccharide binding	2.69E-03
43	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.00E-03
44	GO:0043047: single-stranded telomeric DNA binding	3.00E-03
45	GO:0080031: methyl salicylate esterase activity	3.00E-03
46	GO:0045544: gibberellin 20-oxidase activity	3.00E-03
47	GO:0005096: GTPase activator activity	3.27E-03
48	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.04E-03
49	GO:0016987: sigma factor activity	4.04E-03
50	GO:0010328: auxin influx transmembrane transporter activity	4.04E-03
51	GO:0019199: transmembrane receptor protein kinase activity	4.04E-03
52	GO:0001053: plastid sigma factor activity	4.04E-03
53	GO:0016301: kinase activity	4.17E-03
54	GO:0005345: purine nucleobase transmembrane transporter activity	4.22E-03
55	GO:0008725: DNA-3-methyladenine glycosylase activity	5.19E-03
56	GO:0030570: pectate lyase activity	5.55E-03
57	GO:0004674: protein serine/threonine kinase activity	5.77E-03
58	GO:0004332: fructose-bisphosphate aldolase activity	6.43E-03
59	GO:0004709: MAP kinase kinase kinase activity	6.43E-03
60	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	6.43E-03
61	GO:0030332: cyclin binding	6.43E-03
62	GO:0004556: alpha-amylase activity	6.43E-03
63	GO:2001070: starch binding	6.43E-03
64	GO:0030983: mismatched DNA binding	6.43E-03
65	GO:0080030: methyl indole-3-acetate esterase activity	6.43E-03
66	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	7.65E-03
67	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.77E-03
68	GO:0016832: aldehyde-lyase activity	7.77E-03
69	GO:0019900: kinase binding	7.77E-03
70	GO:0004124: cysteine synthase activity	7.77E-03
71	GO:0042162: telomeric DNA binding	9.20E-03
72	GO:0009881: photoreceptor activity	9.20E-03
73	GO:0016759: cellulose synthase activity	1.15E-02
74	GO:0003724: RNA helicase activity	1.23E-02
75	GO:0016413: O-acetyltransferase activity	1.30E-02
76	GO:0016788: hydrolase activity, acting on ester bonds	1.34E-02
77	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.40E-02
78	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.40E-02
79	GO:0009672: auxin:proton symporter activity	1.58E-02
80	GO:0004673: protein histidine kinase activity	1.76E-02
81	GO:0004805: trehalose-phosphatase activity	1.76E-02
82	GO:0010329: auxin efflux transmembrane transporter activity	2.36E-02
83	GO:0000155: phosphorelay sensor kinase activity	2.36E-02
84	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.50E-02
85	GO:0003712: transcription cofactor activity	2.79E-02
86	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.01E-02
87	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.01E-02
88	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.01E-02
89	GO:0043621: protein self-association	3.19E-02
90	GO:0008134: transcription factor binding	3.24E-02
91	GO:0051536: iron-sulfur cluster binding	3.24E-02
92	GO:0031418: L-ascorbic acid binding	3.24E-02
93	GO:0043424: protein histidine kinase binding	3.48E-02
94	GO:0015079: potassium ion transmembrane transporter activity	3.48E-02
95	GO:0033612: receptor serine/threonine kinase binding	3.72E-02
96	GO:0003964: RNA-directed DNA polymerase activity	3.72E-02
97	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.97E-02
98	GO:0016760: cellulose synthase (UDP-forming) activity	4.22E-02
99	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.28E-02
100	GO:0004812: aminoacyl-tRNA ligase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009986: cell surface	6.46E-04
5	GO:0009569: chloroplast starch grain	1.25E-03
6	GO:0005697: telomerase holoenzyme complex	1.25E-03
7	GO:0005886: plasma membrane	2.04E-03
8	GO:0030139: endocytic vesicle	2.06E-03
9	GO:0032585: multivesicular body membrane	3.00E-03
10	GO:0032432: actin filament bundle	3.00E-03
11	GO:0009531: secondary cell wall	3.00E-03
12	GO:0009507: chloroplast	6.45E-03
13	GO:0046658: anchored component of plasma membrane	1.03E-02
14	GO:0000784: nuclear chromosome, telomeric region	1.23E-02
15	GO:0010494: cytoplasmic stress granule	1.40E-02
16	GO:0009707: chloroplast outer membrane	1.80E-02
17	GO:0005884: actin filament	1.95E-02
18	GO:0009574: preprophase band	2.36E-02
19	GO:0005578: proteinaceous extracellular matrix	2.36E-02
20	GO:0030095: chloroplast photosystem II	2.57E-02
21	GO:0090406: pollen tube	2.95E-02
22	GO:0000419: DNA-directed RNA polymerase V complex	3.01E-02
23	GO:0005875: microtubule associated complex	3.01E-02
24	GO:0009654: photosystem II oxygen evolving complex	3.48E-02
25	GO:0005871: kinesin complex	4.74E-02