Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032499: detection of peptidoglycan0.00E+00
2GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
3GO:0071327: cellular response to trehalose stimulus0.00E+00
4GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0002764: immune response-regulating signaling pathway0.00E+00
7GO:0033587: shikimate biosynthetic process0.00E+00
8GO:0009268: response to pH0.00E+00
9GO:0006468: protein phosphorylation8.08E-10
10GO:0080142: regulation of salicylic acid biosynthetic process6.29E-07
11GO:0010200: response to chitin6.23E-06
12GO:0031348: negative regulation of defense response1.18E-05
13GO:0006952: defense response2.25E-05
14GO:0042742: defense response to bacterium5.63E-05
15GO:0046777: protein autophosphorylation5.67E-05
16GO:0060548: negative regulation of cell death7.53E-05
17GO:0002237: response to molecule of bacterial origin9.14E-05
18GO:0009626: plant-type hypersensitive response1.07E-04
19GO:0009697: salicylic acid biosynthetic process1.18E-04
20GO:0009751: response to salicylic acid1.32E-04
21GO:0006499: N-terminal protein myristoylation1.66E-04
22GO:2000022: regulation of jasmonic acid mediated signaling pathway2.25E-04
23GO:0034975: protein folding in endoplasmic reticulum3.47E-04
24GO:0010365: positive regulation of ethylene biosynthetic process3.47E-04
25GO:0051938: L-glutamate import3.47E-04
26GO:0051245: negative regulation of cellular defense response3.47E-04
27GO:0019567: arabinose biosynthetic process3.47E-04
28GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.47E-04
29GO:0051180: vitamin transport3.47E-04
30GO:0030974: thiamine pyrophosphate transport3.47E-04
31GO:1901183: positive regulation of camalexin biosynthetic process3.47E-04
32GO:0019673: GDP-mannose metabolic process3.47E-04
33GO:0032491: detection of molecule of fungal origin3.47E-04
34GO:0042759: long-chain fatty acid biosynthetic process3.47E-04
35GO:0010150: leaf senescence4.04E-04
36GO:0035556: intracellular signal transduction6.19E-04
37GO:1900426: positive regulation of defense response to bacterium6.53E-04
38GO:0046939: nucleotide phosphorylation7.56E-04
39GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.56E-04
40GO:0015802: basic amino acid transport7.56E-04
41GO:0080185: effector dependent induction by symbiont of host immune response7.56E-04
42GO:0010618: aerenchyma formation7.56E-04
43GO:1902066: regulation of cell wall pectin metabolic process7.56E-04
44GO:0010115: regulation of abscisic acid biosynthetic process7.56E-04
45GO:0031349: positive regulation of defense response7.56E-04
46GO:0015893: drug transport7.56E-04
47GO:0015865: purine nucleotide transport7.56E-04
48GO:0010271: regulation of chlorophyll catabolic process7.56E-04
49GO:0010541: acropetal auxin transport7.56E-04
50GO:0019725: cellular homeostasis7.56E-04
51GO:0002221: pattern recognition receptor signaling pathway7.56E-04
52GO:0043091: L-arginine import7.56E-04
53GO:0009816: defense response to bacterium, incompatible interaction8.78E-04
54GO:0009817: defense response to fungus, incompatible interaction1.14E-03
55GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.22E-03
56GO:0010498: proteasomal protein catabolic process1.22E-03
57GO:0048586: regulation of long-day photoperiodism, flowering1.22E-03
58GO:0032922: circadian regulation of gene expression1.22E-03
59GO:0002230: positive regulation of defense response to virus by host1.22E-03
60GO:1901672: positive regulation of systemic acquired resistance1.22E-03
61GO:0016045: detection of bacterium1.22E-03
62GO:0034051: negative regulation of plant-type hypersensitive response1.22E-03
63GO:1900140: regulation of seedling development1.22E-03
64GO:0010359: regulation of anion channel activity1.22E-03
65GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.22E-03
66GO:0051176: positive regulation of sulfur metabolic process1.22E-03
67GO:0070588: calcium ion transmembrane transport1.43E-03
68GO:0009867: jasmonic acid mediated signaling pathway1.54E-03
69GO:0007165: signal transduction1.69E-03
70GO:0048194: Golgi vesicle budding1.76E-03
71GO:0006487: protein N-linked glycosylation1.76E-03
72GO:0046902: regulation of mitochondrial membrane permeability1.76E-03
73GO:0010104: regulation of ethylene-activated signaling pathway1.76E-03
74GO:0009399: nitrogen fixation1.76E-03
75GO:0009863: salicylic acid mediated signaling pathway1.76E-03
76GO:0072583: clathrin-dependent endocytosis1.76E-03
77GO:0010306: rhamnogalacturonan II biosynthetic process1.76E-03
78GO:0006612: protein targeting to membrane1.76E-03
79GO:0071323: cellular response to chitin1.76E-03
80GO:0046513: ceramide biosynthetic process1.76E-03
81GO:0046836: glycolipid transport1.76E-03
82GO:0000187: activation of MAPK activity1.76E-03
83GO:0016226: iron-sulfur cluster assembly2.33E-03
84GO:0045227: capsule polysaccharide biosynthetic process2.37E-03
85GO:0033358: UDP-L-arabinose biosynthetic process2.37E-03
86GO:0010363: regulation of plant-type hypersensitive response2.37E-03
87GO:0071219: cellular response to molecule of bacterial origin2.37E-03
88GO:0010508: positive regulation of autophagy2.37E-03
89GO:0006542: glutamine biosynthetic process2.37E-03
90GO:0006470: protein dephosphorylation2.48E-03
91GO:0018344: protein geranylgeranylation3.03E-03
92GO:0010225: response to UV-C3.03E-03
93GO:0006486: protein glycosylation3.10E-03
94GO:0010405: arabinogalactan protein metabolic process3.74E-03
95GO:1900425: negative regulation of defense response to bacterium3.74E-03
96GO:0018258: protein O-linked glycosylation via hydroxyproline3.74E-03
97GO:0010337: regulation of salicylic acid metabolic process3.74E-03
98GO:0002238: response to molecule of fungal origin3.74E-03
99GO:0010942: positive regulation of cell death3.74E-03
100GO:0009620: response to fungus4.34E-03
101GO:2000037: regulation of stomatal complex patterning4.50E-03
102GO:0010310: regulation of hydrogen peroxide metabolic process4.50E-03
103GO:0009423: chorismate biosynthetic process4.50E-03
104GO:0007264: small GTPase mediated signal transduction4.60E-03
105GO:0016032: viral process4.60E-03
106GO:0018105: peptidyl-serine phosphorylation5.05E-03
107GO:1900056: negative regulation of leaf senescence5.32E-03
108GO:0070370: cellular heat acclimation5.32E-03
109GO:0009787: regulation of abscisic acid-activated signaling pathway6.17E-03
110GO:0030162: regulation of proteolysis6.17E-03
111GO:0006491: N-glycan processing6.17E-03
112GO:0045010: actin nucleation6.17E-03
113GO:0009627: systemic acquired resistance6.96E-03
114GO:0042128: nitrate assimilation6.96E-03
115GO:2000031: regulation of salicylic acid mediated signaling pathway7.08E-03
116GO:0010099: regulation of photomorphogenesis7.08E-03
117GO:0009932: cell tip growth7.08E-03
118GO:0010204: defense response signaling pathway, resistance gene-independent7.08E-03
119GO:0009051: pentose-phosphate shunt, oxidative branch8.04E-03
120GO:0006098: pentose-phosphate shunt8.04E-03
121GO:0090333: regulation of stomatal closure8.04E-03
122GO:0010112: regulation of systemic acquired resistance8.04E-03
123GO:0048268: clathrin coat assembly9.03E-03
124GO:0048354: mucilage biosynthetic process involved in seed coat development9.03E-03
125GO:0010380: regulation of chlorophyll biosynthetic process9.03E-03
126GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.03E-03
127GO:0048527: lateral root development9.43E-03
128GO:0009870: defense response signaling pathway, resistance gene-dependent1.01E-02
129GO:0043069: negative regulation of programmed cell death1.01E-02
130GO:0045087: innate immune response1.03E-02
131GO:0009073: aromatic amino acid family biosynthetic process1.12E-02
132GO:0007166: cell surface receptor signaling pathway1.16E-02
133GO:0006887: exocytosis1.23E-02
134GO:0008361: regulation of cell size1.23E-02
135GO:0002213: defense response to insect1.23E-02
136GO:0015706: nitrate transport1.23E-02
137GO:0009617: response to bacterium1.23E-02
138GO:0010105: negative regulation of ethylene-activated signaling pathway1.23E-02
139GO:0018107: peptidyl-threonine phosphorylation1.34E-02
140GO:0055046: microgametogenesis1.34E-02
141GO:0051707: response to other organism1.34E-02
142GO:0009785: blue light signaling pathway1.34E-02
143GO:0006006: glucose metabolic process1.34E-02
144GO:0010229: inflorescence development1.34E-02
145GO:0009266: response to temperature stimulus1.46E-02
146GO:0034605: cellular response to heat1.46E-02
147GO:0007034: vacuolar transport1.46E-02
148GO:0006855: drug transmembrane transport1.56E-02
149GO:0046854: phosphatidylinositol phosphorylation1.59E-02
150GO:0009225: nucleotide-sugar metabolic process1.59E-02
151GO:0010167: response to nitrate1.59E-02
152GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.62E-02
153GO:0009695: jasmonic acid biosynthetic process1.98E-02
154GO:0009909: regulation of flower development2.00E-02
155GO:0009269: response to desiccation2.12E-02
156GO:0048278: vesicle docking2.12E-02
157GO:0003333: amino acid transmembrane transport2.12E-02
158GO:0071456: cellular response to hypoxia2.26E-02
159GO:0010017: red or far-red light signaling pathway2.26E-02
160GO:0009814: defense response, incompatible interaction2.26E-02
161GO:0009625: response to insect2.40E-02
162GO:0010227: floral organ abscission2.40E-02
163GO:0006012: galactose metabolic process2.40E-02
164GO:0009611: response to wounding2.42E-02
165GO:0009561: megagametogenesis2.55E-02
166GO:0050832: defense response to fungus2.63E-02
167GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.70E-02
168GO:0009742: brassinosteroid mediated signaling pathway2.73E-02
169GO:0042391: regulation of membrane potential2.85E-02
170GO:0006885: regulation of pH3.01E-02
171GO:0061025: membrane fusion3.17E-02
172GO:0048544: recognition of pollen3.17E-02
173GO:0002229: defense response to oomycetes3.50E-02
174GO:0006891: intra-Golgi vesicle-mediated transport3.50E-02
175GO:0030163: protein catabolic process3.84E-02
176GO:0006464: cellular protein modification process4.01E-02
177GO:0006904: vesicle docking involved in exocytosis4.19E-02
178GO:0051607: defense response to virus4.36E-02
179GO:0000910: cytokinesis4.36E-02
180GO:0006810: transport4.43E-02
181GO:0009911: positive regulation of flower development4.55E-02
182GO:0001666: response to hypoxia4.55E-02
183GO:0009615: response to virus4.55E-02
184GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.73E-02
185GO:0006906: vesicle fusion4.91E-02
186GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.95E-02
RankGO TermAdjusted P value
1GO:0005522: profilin binding0.00E+00
2GO:0004107: chorismate synthase activity0.00E+00
3GO:2001080: chitosan binding0.00E+00
4GO:0016301: kinase activity2.63E-09
5GO:0004674: protein serine/threonine kinase activity1.76E-08
6GO:0005524: ATP binding3.19E-07
7GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.42E-06
8GO:0005515: protein binding2.00E-05
9GO:0019199: transmembrane receptor protein kinase activity7.53E-05
10GO:0004672: protein kinase activity2.09E-04
11GO:0004012: phospholipid-translocating ATPase activity2.30E-04
12GO:0032050: clathrin heavy chain binding3.47E-04
13GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.47E-04
14GO:1901149: salicylic acid binding3.47E-04
15GO:0090422: thiamine pyrophosphate transporter activity3.47E-04
16GO:0004662: CAAX-protein geranylgeranyltransferase activity3.47E-04
17GO:0015085: calcium ion transmembrane transporter activity3.47E-04
18GO:0008446: GDP-mannose 4,6-dehydratase activity3.47E-04
19GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.54E-04
20GO:0005525: GTP binding4.92E-04
21GO:0005509: calcium ion binding6.71E-04
22GO:0050291: sphingosine N-acyltransferase activity7.56E-04
23GO:0048531: beta-1,3-galactosyltransferase activity7.56E-04
24GO:0004713: protein tyrosine kinase activity7.61E-04
25GO:0043531: ADP binding1.03E-03
26GO:0005388: calcium-transporting ATPase activity1.13E-03
27GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.13E-03
28GO:0046423: allene-oxide cyclase activity1.22E-03
29GO:0004190: aspartic-type endopeptidase activity1.43E-03
30GO:0015189: L-lysine transmembrane transporter activity1.76E-03
31GO:0017089: glycolipid transporter activity1.76E-03
32GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity1.76E-03
33GO:0019201: nucleotide kinase activity1.76E-03
34GO:0015181: arginine transmembrane transporter activity1.76E-03
35GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.76E-03
36GO:0043424: protein histidine kinase binding1.94E-03
37GO:0033612: receptor serine/threonine kinase binding2.13E-03
38GO:0050373: UDP-arabinose 4-epimerase activity2.37E-03
39GO:0004345: glucose-6-phosphate dehydrogenase activity2.37E-03
40GO:0051861: glycolipid binding2.37E-03
41GO:0005313: L-glutamate transmembrane transporter activity2.37E-03
42GO:0004356: glutamate-ammonia ligase activity3.03E-03
43GO:0045431: flavonol synthase activity3.03E-03
44GO:0005471: ATP:ADP antiporter activity3.03E-03
45GO:1990714: hydroxyproline O-galactosyltransferase activity3.74E-03
46GO:0035252: UDP-xylosyltransferase activity3.74E-03
47GO:0019901: protein kinase binding4.02E-03
48GO:0005516: calmodulin binding4.45E-03
49GO:0004559: alpha-mannosidase activity4.50E-03
50GO:0004017: adenylate kinase activity4.50E-03
51GO:0003978: UDP-glucose 4-epimerase activity4.50E-03
52GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.50E-03
53GO:0004714: transmembrane receptor protein tyrosine kinase activity6.17E-03
54GO:0004708: MAP kinase kinase activity6.17E-03
55GO:0008375: acetylglucosaminyltransferase activity6.96E-03
56GO:0009931: calcium-dependent protein serine/threonine kinase activity6.96E-03
57GO:0004430: 1-phosphatidylinositol 4-kinase activity7.08E-03
58GO:0004683: calmodulin-dependent protein kinase activity7.35E-03
59GO:0071949: FAD binding8.04E-03
60GO:0004722: protein serine/threonine phosphatase activity8.28E-03
61GO:0015238: drug transmembrane transporter activity8.56E-03
62GO:0015112: nitrate transmembrane transporter activity9.03E-03
63GO:0015174: basic amino acid transmembrane transporter activity9.03E-03
64GO:0003924: GTPase activity9.90E-03
65GO:0004568: chitinase activity1.01E-02
66GO:0005545: 1-phosphatidylinositol binding1.01E-02
67GO:0008047: enzyme activator activity1.01E-02
68GO:0008559: xenobiotic-transporting ATPase activity1.12E-02
69GO:0005543: phospholipid binding1.12E-02
70GO:0008378: galactosyltransferase activity1.23E-02
71GO:0031072: heat shock protein binding1.34E-02
72GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.46E-02
73GO:0004842: ubiquitin-protein transferase activity1.49E-02
74GO:0030552: cAMP binding1.59E-02
75GO:0030553: cGMP binding1.59E-02
76GO:0008061: chitin binding1.59E-02
77GO:0003954: NADH dehydrogenase activity1.85E-02
78GO:0016298: lipase activity1.87E-02
79GO:0005216: ion channel activity1.98E-02
80GO:0031625: ubiquitin protein ligase binding2.00E-02
81GO:0004707: MAP kinase activity2.12E-02
82GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.21E-02
83GO:0003756: protein disulfide isomerase activity2.55E-02
84GO:0015035: protein disulfide oxidoreductase activity2.65E-02
85GO:0005249: voltage-gated potassium channel activity2.85E-02
86GO:0030551: cyclic nucleotide binding2.85E-02
87GO:0005451: monovalent cation:proton antiporter activity2.85E-02
88GO:0030276: clathrin binding3.01E-02
89GO:0003713: transcription coactivator activity3.01E-02
90GO:0015299: solute:proton antiporter activity3.17E-02
91GO:0010181: FMN binding3.17E-02
92GO:0004872: receptor activity3.33E-02
93GO:0015385: sodium:proton antiporter activity3.84E-02
94GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.84E-02
95GO:0051015: actin filament binding3.84E-02
96GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.19E-02
97GO:0015297: antiporter activity4.23E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.89E-10
2GO:0016021: integral component of membrane2.37E-04
3GO:0005911: cell-cell junction3.47E-04
4GO:0005953: CAAX-protein geranylgeranyltransferase complex3.47E-04
5GO:0031304: intrinsic component of mitochondrial inner membrane7.56E-04
6GO:0005901: caveola7.56E-04
7GO:0012505: endomembrane system8.45E-04
8GO:0030139: endocytic vesicle1.22E-03
9GO:0005794: Golgi apparatus6.77E-03
10GO:0005740: mitochondrial envelope1.01E-02
11GO:0030125: clathrin vesicle coat1.01E-02
12GO:0090404: pollen tube tip1.12E-02
13GO:0005795: Golgi stack1.59E-02
14GO:0005758: mitochondrial intermembrane space1.85E-02
15GO:0005905: clathrin-coated pit2.12E-02
16GO:0030136: clathrin-coated vesicle2.70E-02
17GO:0005770: late endosome3.01E-02
18GO:0009504: cell plate3.33E-02
19GO:0005774: vacuolar membrane3.58E-02
20GO:0000145: exocyst3.67E-02
21GO:0032580: Golgi cisterna membrane4.01E-02
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Gene type



Gene DE type