Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031116: positive regulation of microtubule polymerization0.00E+00
2GO:0006552: leucine catabolic process1.91E-06
3GO:1902265: abscisic acid homeostasis4.04E-05
4GO:0009150: purine ribonucleotide metabolic process1.73E-04
5GO:0001578: microtubule bundle formation1.73E-04
6GO:0031022: nuclear migration along microfilament1.73E-04
7GO:0006168: adenine salvage2.55E-04
8GO:0006166: purine ribonucleoside salvage2.55E-04
9GO:0046653: tetrahydrofolate metabolic process2.55E-04
10GO:0009902: chloroplast relocation3.43E-04
11GO:0051322: anaphase3.43E-04
12GO:0007020: microtubule nucleation3.43E-04
13GO:0046785: microtubule polymerization4.37E-04
14GO:0044209: AMP salvage4.37E-04
15GO:0006559: L-phenylalanine catabolic process5.37E-04
16GO:0009903: chloroplast avoidance movement6.40E-04
17GO:0022904: respiratory electron transport chain7.49E-04
18GO:0048528: post-embryonic root development7.49E-04
19GO:0009787: regulation of abscisic acid-activated signaling pathway8.61E-04
20GO:0009821: alkaloid biosynthetic process1.10E-03
21GO:0006790: sulfur compound metabolic process1.63E-03
22GO:0030048: actin filament-based movement1.77E-03
23GO:0009767: photosynthetic electron transport chain1.77E-03
24GO:0010207: photosystem II assembly1.92E-03
25GO:0006825: copper ion transport2.55E-03
26GO:0043622: cortical microtubule organization2.55E-03
27GO:0080092: regulation of pollen tube growth2.89E-03
28GO:0006520: cellular amino acid metabolic process3.80E-03
29GO:0010197: polar nucleus fusion3.80E-03
30GO:0009646: response to absence of light3.99E-03
31GO:0071554: cell wall organization or biogenesis4.38E-03
32GO:0000910: cytokinesis5.42E-03
33GO:0010029: regulation of seed germination5.86E-03
34GO:0048573: photoperiodism, flowering6.31E-03
35GO:0009637: response to blue light7.99E-03
36GO:0008283: cell proliferation9.53E-03
37GO:0006812: cation transport1.12E-02
38GO:0009058: biosynthetic process1.84E-02
39GO:0009739: response to gibberellin2.41E-02
40GO:0042254: ribosome biogenesis3.08E-02
41GO:0006970: response to osmotic stress3.20E-02
42GO:0009860: pollen tube growth3.20E-02
43GO:0046777: protein autophosphorylation3.71E-02
44GO:0044550: secondary metabolite biosynthetic process3.76E-02
45GO:0009751: response to salicylic acid4.62E-02
46GO:0009753: response to jasmonic acid4.90E-02
RankGO TermAdjusted P value
1GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
2GO:0008115: sarcosine oxidase activity0.00E+00
3GO:0048039: ubiquinone binding0.00E+00
4GO:1990055: phenylacetaldehyde synthase activity0.00E+00
5GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
6GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
7GO:0004837: tyrosine decarboxylase activity4.04E-05
8GO:0004485: methylcrotonoyl-CoA carboxylase activity4.04E-05
9GO:0004008: copper-exporting ATPase activity4.04E-05
10GO:0032549: ribonucleoside binding1.73E-04
11GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.73E-04
12GO:0004075: biotin carboxylase activity1.73E-04
13GO:0008430: selenium binding1.73E-04
14GO:0004848: ureidoglycolate hydrolase activity1.73E-04
15GO:0003999: adenine phosphoribosyltransferase activity2.55E-04
16GO:0047627: adenylylsulfatase activity2.55E-04
17GO:0009927: histidine phosphotransfer kinase activity6.40E-04
18GO:0015491: cation:cation antiporter activity8.61E-04
19GO:0005375: copper ion transmembrane transporter activity9.77E-04
20GO:0016844: strictosidine synthase activity1.22E-03
21GO:0005089: Rho guanyl-nucleotide exchange factor activity1.49E-03
22GO:0001054: RNA polymerase I activity1.49E-03
23GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.77E-03
24GO:0008080: N-acetyltransferase activity3.80E-03
25GO:0048038: quinone binding4.38E-03
26GO:0016413: O-acetyltransferase activity5.42E-03
27GO:0050897: cobalt ion binding7.49E-03
28GO:0051539: 4 iron, 4 sulfur cluster binding8.75E-03
29GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.18E-02
30GO:0031625: ubiquitin protein ligase binding1.26E-02
31GO:0030170: pyridoxal phosphate binding1.91E-02
32GO:0004252: serine-type endopeptidase activity1.91E-02
33GO:0008017: microtubule binding2.30E-02
34GO:0008194: UDP-glycosyltransferase activity2.41E-02
35GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.64E-02
36GO:0061630: ubiquitin protein ligase activity3.67E-02
37GO:0052689: carboxylic ester hydrolase activity3.80E-02
38GO:0042803: protein homodimerization activity4.16E-02
39GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.25E-02
40GO:0009055: electron carrier activity4.90E-02
RankGO TermAdjusted P value
1GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
2GO:0072686: mitotic spindle4.37E-04
3GO:0010005: cortical microtubule, transverse to long axis6.40E-04
4GO:0031305: integral component of mitochondrial inner membrane8.61E-04
5GO:0005736: DNA-directed RNA polymerase I complex1.10E-03
6GO:0055028: cortical microtubule1.35E-03
7GO:0005740: mitochondrial envelope1.35E-03
8GO:0016324: apical plasma membrane1.35E-03
9GO:0009574: preprophase band1.77E-03
10GO:0005938: cell cortex1.77E-03
11GO:0009507: chloroplast3.34E-03
12GO:0009707: chloroplast outer membrane6.77E-03
13GO:0005819: spindle8.49E-03
14GO:0005856: cytoskeleton1.03E-02
15GO:0031966: mitochondrial membrane1.12E-02
16GO:0009535: chloroplast thylakoid membrane1.20E-02
17GO:0005623: cell1.80E-02
18GO:0009524: phragmoplast1.84E-02
19GO:0005759: mitochondrial matrix2.08E-02
20GO:0005829: cytosol2.43E-02
21GO:0009536: plastid2.88E-02
22GO:0005874: microtubule3.45E-02
23GO:0005773: vacuole3.54E-02
24GO:0031969: chloroplast membrane3.54E-02
25GO:0016021: integral component of membrane4.54E-02
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Gene type



Gene DE type