co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G03520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0006573: valine metabolic process	0.00E+00
4	GO:0045184: establishment of protein localization	0.00E+00
5	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
6	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
7	GO:0070125: mitochondrial translational elongation	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0042352: GDP-L-fucose salvage	0.00E+00
10	GO:0061157: mRNA destabilization	0.00E+00
11	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
12	GO:0001778: plasma membrane repair	0.00E+00
13	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
14	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
15	GO:1900871: chloroplast mRNA modification	8.79E-06
16	GO:0046620: regulation of organ growth	2.10E-05
17	GO:0009451: RNA modification	2.17E-05
18	GO:0009098: leucine biosynthetic process	5.39E-05
19	GO:1900865: chloroplast RNA modification	5.39E-05
20	GO:0046739: transport of virus in multicellular host	6.54E-05
21	GO:0042793: transcription from plastid promoter	2.51E-04
22	GO:0016554: cytidine to uridine editing	2.51E-04
23	GO:0009082: branched-chain amino acid biosynthetic process	3.37E-04
24	GO:0009099: valine biosynthetic process	3.37E-04
25	GO:0009416: response to light stimulus	3.61E-04
26	GO:0048437: floral organ development	4.34E-04
27	GO:0090558: plant epidermis development	4.45E-04
28	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	4.45E-04
29	GO:0043266: regulation of potassium ion transport	4.45E-04
30	GO:0010063: positive regulation of trichoblast fate specification	4.45E-04
31	GO:0010480: microsporocyte differentiation	4.45E-04
32	GO:0006551: leucine metabolic process	4.45E-04
33	GO:2000021: regulation of ion homeostasis	4.45E-04
34	GO:0035987: endodermal cell differentiation	4.45E-04
35	GO:1902458: positive regulation of stomatal opening	4.45E-04
36	GO:0015904: tetracycline transport	4.45E-04
37	GO:0042659: regulation of cell fate specification	4.45E-04
38	GO:2000070: regulation of response to water deprivation	5.41E-04
39	GO:0010305: leaf vascular tissue pattern formation	6.25E-04
40	GO:0009097: isoleucine biosynthetic process	6.60E-04
41	GO:0040008: regulation of growth	7.25E-04
42	GO:0016032: viral process	8.89E-04
43	GO:0030187: melatonin biosynthetic process	9.61E-04
44	GO:0006432: phenylalanyl-tRNA aminoacylation	9.61E-04
45	GO:0018026: peptidyl-lysine monomethylation	9.61E-04
46	GO:0080009: mRNA methylation	9.61E-04
47	GO:0009786: regulation of asymmetric cell division	9.61E-04
48	GO:0046740: transport of virus in host, cell to cell	9.61E-04
49	GO:0031648: protein destabilization	9.61E-04
50	GO:0001682: tRNA 5'-leader removal	9.61E-04
51	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.61E-04
52	GO:0006568: tryptophan metabolic process	9.61E-04
53	GO:0006420: arginyl-tRNA aminoacylation	9.61E-04
54	GO:0010027: thylakoid membrane organization	1.30E-03
55	GO:0009405: pathogenesis	1.57E-03
56	GO:0030029: actin filament-based process	1.57E-03
57	GO:0045910: negative regulation of DNA recombination	1.57E-03
58	GO:0033591: response to L-ascorbic acid	1.57E-03
59	GO:0090708: specification of plant organ axis polarity	1.57E-03
60	GO:0009658: chloroplast organization	1.69E-03
61	GO:0006612: protein targeting to membrane	2.27E-03
62	GO:0016556: mRNA modification	2.27E-03
63	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.27E-03
64	GO:0010071: root meristem specification	2.27E-03
65	GO:0009102: biotin biosynthetic process	2.27E-03
66	GO:0032456: endocytic recycling	2.27E-03
67	GO:0010239: chloroplast mRNA processing	2.27E-03
68	GO:0009793: embryo development ending in seed dormancy	2.28E-03
69	GO:0005992: trehalose biosynthetic process	2.54E-03
70	GO:0008295: spermidine biosynthetic process	3.05E-03
71	GO:0009755: hormone-mediated signaling pathway	3.05E-03
72	GO:0042274: ribosomal small subunit biogenesis	3.05E-03
73	GO:0006221: pyrimidine nucleotide biosynthetic process	3.05E-03
74	GO:0030104: water homeostasis	3.05E-03
75	GO:0009926: auxin polar transport	3.41E-03
76	GO:0016131: brassinosteroid metabolic process	3.90E-03
77	GO:0032543: mitochondrial translation	3.90E-03
78	GO:0045038: protein import into chloroplast thylakoid membrane	3.90E-03
79	GO:0016123: xanthophyll biosynthetic process	3.90E-03
80	GO:0010438: cellular response to sulfur starvation	3.90E-03
81	GO:0080110: sporopollenin biosynthetic process	3.90E-03
82	GO:0007166: cell surface receptor signaling pathway	4.39E-03
83	GO:0008033: tRNA processing	4.69E-03
84	GO:0048831: regulation of shoot system development	4.83E-03
85	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.83E-03
86	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.83E-03
87	GO:0010405: arabinogalactan protein metabolic process	4.83E-03
88	GO:0009959: negative gravitropism	4.83E-03
89	GO:0010182: sugar mediated signaling pathway	5.06E-03
90	GO:0042372: phylloquinone biosynthetic process	5.83E-03
91	GO:0009612: response to mechanical stimulus	5.83E-03
92	GO:0017148: negative regulation of translation	5.83E-03
93	GO:0031930: mitochondria-nucleus signaling pathway	5.83E-03
94	GO:0030488: tRNA methylation	5.83E-03
95	GO:0080086: stamen filament development	5.83E-03
96	GO:2000067: regulation of root morphogenesis	5.83E-03
97	GO:0010098: suspensor development	6.89E-03
98	GO:0015693: magnesium ion transport	6.89E-03
99	GO:0010161: red light signaling pathway	6.89E-03
100	GO:0030497: fatty acid elongation	6.89E-03
101	GO:0009733: response to auxin	7.50E-03
102	GO:0070413: trehalose metabolism in response to stress	8.02E-03
103	GO:0055075: potassium ion homeostasis	8.02E-03
104	GO:0000105: histidine biosynthetic process	8.02E-03
105	GO:0009819: drought recovery	8.02E-03
106	GO:0010439: regulation of glucosinolate biosynthetic process	8.02E-03
107	GO:0010497: plasmodesmata-mediated intercellular transport	9.21E-03
108	GO:0009657: plastid organization	9.21E-03
109	GO:0010100: negative regulation of photomorphogenesis	9.21E-03
110	GO:0032544: plastid translation	9.21E-03
111	GO:0010099: regulation of photomorphogenesis	9.21E-03
112	GO:0071482: cellular response to light stimulus	9.21E-03
113	GO:0015996: chlorophyll catabolic process	9.21E-03
114	GO:0007186: G-protein coupled receptor signaling pathway	9.21E-03
115	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.02E-02
116	GO:0048507: meristem development	1.05E-02
117	GO:0006783: heme biosynthetic process	1.05E-02
118	GO:0000373: Group II intron splicing	1.05E-02
119	GO:0000902: cell morphogenesis	1.05E-02
120	GO:0051865: protein autoubiquitination	1.05E-02
121	GO:0015995: chlorophyll biosynthetic process	1.07E-02
122	GO:0016571: histone methylation	1.18E-02
123	GO:0031425: chloroplast RNA processing	1.18E-02
124	GO:0016573: histone acetylation	1.18E-02
125	GO:2000280: regulation of root development	1.18E-02
126	GO:0009299: mRNA transcription	1.31E-02
127	GO:0048829: root cap development	1.31E-02
128	GO:0006298: mismatch repair	1.31E-02
129	GO:0009910: negative regulation of flower development	1.38E-02
130	GO:0009073: aromatic amino acid family biosynthetic process	1.46E-02
131	GO:0000272: polysaccharide catabolic process	1.46E-02
132	GO:0048229: gametophyte development	1.46E-02
133	GO:0009773: photosynthetic electron transport in photosystem I	1.46E-02
134	GO:0009682: induced systemic resistance	1.46E-02
135	GO:0045037: protein import into chloroplast stroma	1.60E-02
136	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.60E-02
137	GO:0010628: positive regulation of gene expression	1.75E-02
138	GO:0009691: cytokinin biosynthetic process	1.75E-02
139	GO:0009718: anthocyanin-containing compound biosynthetic process	1.75E-02
140	GO:0010075: regulation of meristem growth	1.75E-02
141	GO:0009725: response to hormone	1.75E-02
142	GO:0010588: cotyledon vascular tissue pattern formation	1.75E-02
143	GO:0010020: chloroplast fission	1.91E-02
144	GO:0010207: photosystem II assembly	1.91E-02
145	GO:0009266: response to temperature stimulus	1.91E-02
146	GO:0009934: regulation of meristem structural organization	1.91E-02
147	GO:0006541: glutamine metabolic process	1.91E-02
148	GO:0090351: seedling development	2.07E-02
149	GO:0010030: positive regulation of seed germination	2.07E-02
150	GO:0006833: water transport	2.24E-02
151	GO:0000162: tryptophan biosynthetic process	2.24E-02
152	GO:0006338: chromatin remodeling	2.41E-02
153	GO:0010187: negative regulation of seed germination	2.41E-02
154	GO:0051017: actin filament bundle assembly	2.41E-02
155	GO:0051302: regulation of cell division	2.59E-02
156	GO:0006418: tRNA aminoacylation for protein translation	2.59E-02
157	GO:0009734: auxin-activated signaling pathway	2.90E-02
158	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.95E-02
159	GO:0009686: gibberellin biosynthetic process	3.14E-02
160	GO:0010082: regulation of root meristem growth	3.14E-02
161	GO:0009625: response to insect	3.14E-02
162	GO:0048316: seed development	3.21E-02
163	GO:0048367: shoot system development	3.21E-02
164	GO:0042127: regulation of cell proliferation	3.33E-02
165	GO:0010584: pollen exine formation	3.33E-02
166	GO:0009740: gibberellic acid mediated signaling pathway	3.52E-02
167	GO:0016117: carotenoid biosynthetic process	3.53E-02
168	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.53E-02
169	GO:0080022: primary root development	3.73E-02
170	GO:0010087: phloem or xylem histogenesis	3.73E-02
171	GO:0048653: anther development	3.73E-02
172	GO:0042631: cellular response to water deprivation	3.73E-02
173	GO:0006662: glycerol ether metabolic process	3.94E-02
174	GO:0009741: response to brassinosteroid	3.94E-02
175	GO:0010268: brassinosteroid homeostasis	3.94E-02
176	GO:0009958: positive gravitropism	3.94E-02
177	GO:0009742: brassinosteroid mediated signaling pathway	3.96E-02
178	GO:0045454: cell redox homeostasis	4.45E-02
179	GO:0010583: response to cyclopentenone	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
8	GO:0050201: fucokinase activity	0.00E+00
9	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
10	GO:0004519: endonuclease activity	1.97E-06
11	GO:0003723: RNA binding	2.73E-06
12	GO:0001872: (1->3)-beta-D-glucan binding	6.54E-05
13	GO:0003984: acetolactate synthase activity	4.45E-04
14	GO:0052381: tRNA dimethylallyltransferase activity	4.45E-04
15	GO:0010313: phytochrome binding	4.45E-04
16	GO:0008395: steroid hydroxylase activity	4.45E-04
17	GO:0008242: omega peptidase activity	4.45E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.45E-04
19	GO:0050139: nicotinate-N-glucosyltransferase activity	4.45E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.45E-04
21	GO:0016776: phosphotransferase activity, phosphate group as acceptor	4.45E-04
22	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.45E-04
23	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.45E-04
24	GO:0004826: phenylalanine-tRNA ligase activity	9.61E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.61E-04
26	GO:0050736: O-malonyltransferase activity	9.61E-04
27	GO:0034722: gamma-glutamyl-peptidase activity	9.61E-04
28	GO:1901981: phosphatidylinositol phosphate binding	9.61E-04
29	GO:0003862: 3-isopropylmalate dehydrogenase activity	9.61E-04
30	GO:0017118: lipoyltransferase activity	9.61E-04
31	GO:0003852: 2-isopropylmalate synthase activity	9.61E-04
32	GO:0080041: ADP-ribose pyrophosphohydrolase activity	9.61E-04
33	GO:0043425: bHLH transcription factor binding	9.61E-04
34	GO:0004814: arginine-tRNA ligase activity	9.61E-04
35	GO:0004766: spermidine synthase activity	9.61E-04
36	GO:0008805: carbon-monoxide oxygenase activity	9.61E-04
37	GO:0008493: tetracycline transporter activity	9.61E-04
38	GO:0004805: trehalose-phosphatase activity	1.08E-03
39	GO:0008237: metallopeptidase activity	1.12E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.57E-03
41	GO:0016805: dipeptidase activity	1.57E-03
42	GO:0004180: carboxypeptidase activity	1.57E-03
43	GO:0003913: DNA photolyase activity	1.57E-03
44	GO:0002161: aminoacyl-tRNA editing activity	1.57E-03
45	GO:0009982: pseudouridine synthase activity	1.62E-03
46	GO:0009041: uridylate kinase activity	2.27E-03
47	GO:0052656: L-isoleucine transaminase activity	2.27E-03
48	GO:0043023: ribosomal large subunit binding	2.27E-03
49	GO:0052654: L-leucine transaminase activity	2.27E-03
50	GO:0052655: L-valine transaminase activity	2.27E-03
51	GO:0019199: transmembrane receptor protein kinase activity	3.05E-03
52	GO:0004335: galactokinase activity	3.05E-03
53	GO:0016279: protein-lysine N-methyltransferase activity	3.05E-03
54	GO:0004084: branched-chain-amino-acid transaminase activity	3.05E-03
55	GO:0004176: ATP-dependent peptidase activity	3.08E-03
56	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.22E-03
57	GO:0004523: RNA-DNA hybrid ribonuclease activity	3.90E-03
58	GO:0016208: AMP binding	4.83E-03
59	GO:0004462: lactoylglutathione lyase activity	4.83E-03
60	GO:0102229: amylopectin maltohydrolase activity	4.83E-03
61	GO:0030983: mismatched DNA binding	4.83E-03
62	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.83E-03
63	GO:0004526: ribonuclease P activity	4.83E-03
64	GO:0004709: MAP kinase kinase kinase activity	4.83E-03
65	GO:0008080: N-acetyltransferase activity	5.06E-03
66	GO:0016161: beta-amylase activity	5.83E-03
67	GO:0004656: procollagen-proline 4-dioxygenase activity	5.83E-03
68	GO:0008195: phosphatidate phosphatase activity	5.83E-03
69	GO:0016832: aldehyde-lyase activity	5.83E-03
70	GO:0004518: nuclease activity	6.68E-03
71	GO:0005200: structural constituent of cytoskeleton	8.07E-03
72	GO:0008173: RNA methyltransferase activity	9.21E-03
73	GO:0004721: phosphoprotein phosphatase activity	1.07E-02
74	GO:0030247: polysaccharide binding	1.07E-02
75	GO:0004871: signal transducer activity	1.36E-02
76	GO:0003746: translation elongation factor activity	1.51E-02
77	GO:0003993: acid phosphatase activity	1.58E-02
78	GO:0000049: tRNA binding	1.60E-02
79	GO:0015095: magnesium ion transmembrane transporter activity	1.75E-02
80	GO:0031072: heat shock protein binding	1.75E-02
81	GO:0008266: poly(U) RNA binding	1.91E-02
82	GO:0008146: sulfotransferase activity	2.07E-02
83	GO:0043621: protein self-association	2.11E-02
84	GO:0031418: L-ascorbic acid binding	2.41E-02
85	GO:0005528: FK506 binding	2.41E-02
86	GO:0005345: purine nucleobase transmembrane transporter activity	2.59E-02
87	GO:0005524: ATP binding	2.64E-02
88	GO:0003690: double-stranded DNA binding	2.72E-02
89	GO:0033612: receptor serine/threonine kinase binding	2.77E-02
90	GO:0003964: RNA-directed DNA polymerase activity	2.77E-02
91	GO:0008408: 3'-5' exonuclease activity	2.77E-02
92	GO:0003727: single-stranded RNA binding	3.33E-02
93	GO:0008514: organic anion transmembrane transporter activity	3.33E-02
94	GO:0016887: ATPase activity	3.33E-02
95	GO:0047134: protein-disulfide reductase activity	3.53E-02
96	GO:0004812: aminoacyl-tRNA ligase activity	3.53E-02
97	GO:0015035: protein disulfide oxidoreductase activity	3.85E-02
98	GO:0004527: exonuclease activity	3.94E-02
99	GO:0050662: coenzyme binding	4.14E-02
100	GO:0004791: thioredoxin-disulfide reductase activity	4.14E-02
101	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	9.27E-14
4	GO:0009508: plastid chromosome	5.00E-06
5	GO:0009295: nucleoid	9.38E-06
6	GO:0009570: chloroplast stroma	1.19E-04
7	GO:0032541: cortical endoplasmic reticulum	4.45E-04
8	GO:0009501: amyloplast	5.41E-04
9	GO:0031357: integral component of chloroplast inner membrane	9.61E-04
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	9.61E-04
11	GO:0009513: etioplast	9.61E-04
12	GO:0009941: chloroplast envelope	1.28E-03
13	GO:0009509: chromoplast	1.57E-03
14	GO:0030139: endocytic vesicle	1.57E-03
15	GO:0009528: plastid inner membrane	1.57E-03
16	GO:0043231: intracellular membrane-bounded organelle	1.62E-03
17	GO:0009707: chloroplast outer membrane	1.82E-03
18	GO:0032585: multivesicular body membrane	2.27E-03
19	GO:0009527: plastid outer membrane	3.05E-03
20	GO:0009898: cytoplasmic side of plasma membrane	3.05E-03
21	GO:0015629: actin cytoskeleton	3.68E-03
22	GO:0009986: cell surface	6.89E-03
23	GO:0048226: Casparian strip	8.02E-03
24	GO:0009536: plastid	9.07E-03
25	GO:0005739: mitochondrion	1.06E-02
26	GO:0009535: chloroplast thylakoid membrane	1.33E-02
27	GO:0005759: mitochondrial matrix	1.40E-02
28	GO:0009534: chloroplast thylakoid	1.85E-02
29	GO:0030095: chloroplast photosystem II	1.91E-02
30	GO:0009654: photosystem II oxygen evolving complex	2.59E-02
31	GO:0009532: plastid stroma	2.77E-02
32	GO:0005886: plasma membrane	3.55E-02
33	GO:0031965: nuclear membrane	4.36E-02
34	GO:0019898: extrinsic component of membrane	4.36E-02
35	GO:0009543: chloroplast thylakoid lumen	4.67E-02