co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G03415

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
3	GO:1905177: tracheary element differentiation	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:2000469: negative regulation of peroxidase activity	0.00E+00
8	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
9	GO:0090706: specification of plant organ position	0.00E+00
10	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
11	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
12	GO:0045038: protein import into chloroplast thylakoid membrane	2.72E-07
13	GO:2001141: regulation of RNA biosynthetic process	1.38E-05
14	GO:0010207: photosystem II assembly	2.20E-05
15	GO:0071482: cellular response to light stimulus	1.81E-04
16	GO:0070509: calcium ion import	1.84E-04
17	GO:0043266: regulation of potassium ion transport	1.84E-04
18	GO:0010080: regulation of floral meristem growth	1.84E-04
19	GO:2000021: regulation of ion homeostasis	1.84E-04
20	GO:0051247: positive regulation of protein metabolic process	1.84E-04
21	GO:1902458: positive regulation of stomatal opening	1.84E-04
22	GO:2000905: negative regulation of starch metabolic process	1.84E-04
23	GO:0010450: inflorescence meristem growth	1.84E-04
24	GO:0010027: thylakoid membrane organization	2.52E-04
25	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.60E-04
26	GO:0006779: porphyrin-containing compound biosynthetic process	2.64E-04
27	GO:0006782: protoporphyrinogen IX biosynthetic process	3.10E-04
28	GO:0015995: chlorophyll biosynthetic process	3.14E-04
29	GO:0006352: DNA-templated transcription, initiation	3.60E-04
30	GO:0016485: protein processing	3.60E-04
31	GO:0045037: protein import into chloroplast stroma	4.14E-04
32	GO:0001682: tRNA 5'-leader removal	4.15E-04
33	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.15E-04
34	GO:0060359: response to ammonium ion	4.15E-04
35	GO:0048255: mRNA stabilization	4.15E-04
36	GO:0048586: regulation of long-day photoperiodism, flowering	6.76E-04
37	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.76E-04
38	GO:0010623: programmed cell death involved in cell development	6.76E-04
39	GO:0051604: protein maturation	6.76E-04
40	GO:0043157: response to cation stress	6.76E-04
41	GO:0045165: cell fate commitment	6.76E-04
42	GO:0010022: meristem determinacy	6.76E-04
43	GO:0051017: actin filament bundle assembly	7.29E-04
44	GO:0010431: seed maturation	8.78E-04
45	GO:0046739: transport of virus in multicellular host	9.65E-04
46	GO:0051513: regulation of monopolar cell growth	9.65E-04
47	GO:0051639: actin filament network formation	9.65E-04
48	GO:0010239: chloroplast mRNA processing	9.65E-04
49	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.04E-03
50	GO:0048316: seed development	1.25E-03
51	GO:0010109: regulation of photosynthesis	1.28E-03
52	GO:0051781: positive regulation of cell division	1.28E-03
53	GO:0051764: actin crosslink formation	1.28E-03
54	GO:2000306: positive regulation of photomorphogenesis	1.28E-03
55	GO:0007219: Notch signaling pathway	1.28E-03
56	GO:0010508: positive regulation of autophagy	1.28E-03
57	GO:0008295: spermidine biosynthetic process	1.28E-03
58	GO:0008033: tRNA processing	1.31E-03
59	GO:0009646: response to absence of light	1.52E-03
60	GO:0010236: plastoquinone biosynthetic process	1.63E-03
61	GO:0048497: maintenance of floral organ identity	1.63E-03
62	GO:1902183: regulation of shoot apical meristem development	1.63E-03
63	GO:0016123: xanthophyll biosynthetic process	1.63E-03
64	GO:0010158: abaxial cell fate specification	1.63E-03
65	GO:0080110: sporopollenin biosynthetic process	1.63E-03
66	GO:0006655: phosphatidylglycerol biosynthetic process	2.01E-03
67	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.01E-03
68	GO:0009959: negative gravitropism	2.01E-03
69	GO:0006555: methionine metabolic process	2.01E-03
70	GO:0016554: cytidine to uridine editing	2.01E-03
71	GO:0009913: epidermal cell differentiation	2.01E-03
72	GO:0009828: plant-type cell wall loosening	2.10E-03
73	GO:1901259: chloroplast rRNA processing	2.41E-03
74	GO:0017148: negative regulation of translation	2.41E-03
75	GO:0080086: stamen filament development	2.41E-03
76	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.83E-03
77	GO:0030307: positive regulation of cell growth	2.83E-03
78	GO:0048528: post-embryonic root development	2.83E-03
79	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.83E-03
80	GO:0040008: regulation of growth	2.85E-03
81	GO:0046620: regulation of organ growth	3.28E-03
82	GO:0006353: DNA-templated transcription, termination	3.28E-03
83	GO:0006605: protein targeting	3.28E-03
84	GO:2000070: regulation of response to water deprivation	3.28E-03
85	GO:0000105: histidine biosynthetic process	3.28E-03
86	GO:0048564: photosystem I assembly	3.28E-03
87	GO:0010093: specification of floral organ identity	3.75E-03
88	GO:0015996: chlorophyll catabolic process	3.75E-03
89	GO:0007186: G-protein coupled receptor signaling pathway	3.75E-03
90	GO:0010497: plasmodesmata-mediated intercellular transport	3.75E-03
91	GO:0009657: plastid organization	3.75E-03
92	GO:2000024: regulation of leaf development	4.25E-03
93	GO:0000373: Group II intron splicing	4.25E-03
94	GO:0006098: pentose-phosphate shunt	4.25E-03
95	GO:0035999: tetrahydrofolate interconversion	4.76E-03
96	GO:0009086: methionine biosynthetic process	4.76E-03
97	GO:1900865: chloroplast RNA modification	4.76E-03
98	GO:0009658: chloroplast organization	5.27E-03
99	GO:0006949: syncytium formation	5.30E-03
100	GO:0009733: response to auxin	5.79E-03
101	GO:0006415: translational termination	5.85E-03
102	GO:0009073: aromatic amino acid family biosynthetic process	5.85E-03
103	GO:0043085: positive regulation of catalytic activity	5.85E-03
104	GO:0010582: floral meristem determinacy	6.43E-03
105	GO:0005983: starch catabolic process	6.43E-03
106	GO:0016024: CDP-diacylglycerol biosynthetic process	6.43E-03
107	GO:0009664: plant-type cell wall organization	6.65E-03
108	GO:0009691: cytokinin biosynthetic process	7.03E-03
109	GO:0009725: response to hormone	7.03E-03
110	GO:0006094: gluconeogenesis	7.03E-03
111	GO:0009933: meristem structural organization	7.64E-03
112	GO:0010030: positive regulation of seed germination	8.27E-03
113	GO:0070588: calcium ion transmembrane transport	8.27E-03
114	GO:0006096: glycolytic process	8.44E-03
115	GO:0045892: negative regulation of transcription, DNA-templated	8.88E-03
116	GO:0000162: tryptophan biosynthetic process	8.93E-03
117	GO:0009944: polarity specification of adaxial/abaxial axis	9.60E-03
118	GO:0008299: isoprenoid biosynthetic process	1.03E-02
119	GO:0006730: one-carbon metabolic process	1.17E-02
120	GO:0010089: xylem development	1.32E-02
121	GO:0010584: pollen exine formation	1.32E-02
122	GO:0009845: seed germination	1.38E-02
123	GO:0016117: carotenoid biosynthetic process	1.40E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.40E-02
125	GO:0034220: ion transmembrane transport	1.48E-02
126	GO:0042631: cellular response to water deprivation	1.48E-02
127	GO:0007275: multicellular organism development	1.53E-02
128	GO:0009958: positive gravitropism	1.56E-02
129	GO:0010182: sugar mediated signaling pathway	1.56E-02
130	GO:0010154: fruit development	1.56E-02
131	GO:0048544: recognition of pollen	1.64E-02
132	GO:0048825: cotyledon development	1.73E-02
133	GO:0009734: auxin-activated signaling pathway	1.76E-02
134	GO:0000302: response to reactive oxygen species	1.81E-02
135	GO:0009451: RNA modification	1.81E-02
136	GO:0009630: gravitropism	1.90E-02
137	GO:0010090: trichome morphogenesis	1.99E-02
138	GO:0006914: autophagy	2.07E-02
139	GO:0010252: auxin homeostasis	2.07E-02
140	GO:0001666: response to hypoxia	2.35E-02
141	GO:0009911: positive regulation of flower development	2.35E-02
142	GO:0010029: regulation of seed germination	2.45E-02
143	GO:0009826: unidimensional cell growth	2.63E-02
144	GO:0018298: protein-chromophore linkage	2.84E-02
145	GO:0006499: N-terminal protein myristoylation	3.05E-02
146	GO:0005975: carbohydrate metabolic process	3.13E-02
147	GO:0007568: aging	3.15E-02
148	GO:0048527: lateral root development	3.15E-02
149	GO:0009723: response to ethylene	3.16E-02
150	GO:0046686: response to cadmium ion	3.25E-02
151	GO:0045087: innate immune response	3.36E-02
152	GO:0009637: response to blue light	3.36E-02
153	GO:0034599: cellular response to oxidative stress	3.47E-02
154	GO:0006839: mitochondrial transport	3.69E-02
155	GO:0015979: photosynthesis	3.86E-02
156	GO:0010114: response to red light	4.03E-02
157	GO:0009926: auxin polar transport	4.03E-02
158	GO:0009744: response to sucrose	4.03E-02
159	GO:0009644: response to high light intensity	4.26E-02
160	GO:0009965: leaf morphogenesis	4.38E-02
161	GO:0042538: hyperosmotic salinity response	4.73E-02
162	GO:0006364: rRNA processing	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
2	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
6	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0001053: plastid sigma factor activity	2.56E-05
9	GO:0016987: sigma factor activity	2.56E-05
10	GO:0052381: tRNA dimethylallyltransferase activity	1.84E-04
11	GO:0019203: carbohydrate phosphatase activity	1.84E-04
12	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.84E-04
13	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.84E-04
14	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.84E-04
15	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.84E-04
16	GO:0050308: sugar-phosphatase activity	1.84E-04
17	GO:0004766: spermidine synthase activity	4.15E-04
18	GO:0070402: NADPH binding	6.76E-04
19	GO:0052692: raffinose alpha-galactosidase activity	6.76E-04
20	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	6.76E-04
21	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.76E-04
22	GO:0003913: DNA photolyase activity	6.76E-04
23	GO:0004557: alpha-galactosidase activity	6.76E-04
24	GO:0005528: FK506 binding	7.29E-04
25	GO:0016851: magnesium chelatase activity	9.65E-04
26	GO:0016149: translation release factor activity, codon specific	9.65E-04
27	GO:0043023: ribosomal large subunit binding	9.65E-04
28	GO:0001872: (1->3)-beta-D-glucan binding	9.65E-04
29	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.28E-03
30	GO:0051015: actin filament binding	1.98E-03
31	GO:0004462: lactoylglutathione lyase activity	2.01E-03
32	GO:0016688: L-ascorbate peroxidase activity	2.01E-03
33	GO:2001070: starch binding	2.01E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	2.01E-03
35	GO:0004526: ribonuclease P activity	2.01E-03
36	GO:0004130: cytochrome-c peroxidase activity	2.01E-03
37	GO:0004017: adenylate kinase activity	2.41E-03
38	GO:0009881: photoreceptor activity	2.83E-03
39	GO:0043022: ribosome binding	3.28E-03
40	GO:0008312: 7S RNA binding	3.28E-03
41	GO:0004222: metalloendopeptidase activity	3.59E-03
42	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.25E-03
43	GO:0003747: translation release factor activity	4.25E-03
44	GO:0030955: potassium ion binding	4.76E-03
45	GO:0004743: pyruvate kinase activity	4.76E-03
46	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.85E-03
47	GO:0004161: dimethylallyltranstransferase activity	5.85E-03
48	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.18E-03
49	GO:0000976: transcription regulatory region sequence-specific DNA binding	6.43E-03
50	GO:0005262: calcium channel activity	7.03E-03
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.14E-03
52	GO:0008266: poly(U) RNA binding	7.64E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.64E-03
54	GO:0004175: endopeptidase activity	7.64E-03
55	GO:0008146: sulfotransferase activity	8.27E-03
56	GO:0005345: purine nucleobase transmembrane transporter activity	1.03E-02
57	GO:0004519: endonuclease activity	1.26E-02
58	GO:0050662: coenzyme binding	1.64E-02
59	GO:0016853: isomerase activity	1.64E-02
60	GO:0004872: receptor activity	1.73E-02
61	GO:0019901: protein kinase binding	1.73E-02
62	GO:0008483: transaminase activity	2.17E-02
63	GO:0015250: water channel activity	2.35E-02
64	GO:0030247: polysaccharide binding	2.64E-02
65	GO:0000287: magnesium ion binding	2.68E-02
66	GO:0008236: serine-type peptidase activity	2.74E-02
67	GO:0004674: protein serine/threonine kinase activity	2.82E-02
68	GO:0004672: protein kinase activity	2.98E-02
69	GO:0003729: mRNA binding	3.04E-02
70	GO:0030145: manganese ion binding	3.15E-02
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.32E-02
72	GO:0008233: peptidase activity	3.33E-02
73	GO:0043621: protein self-association	4.26E-02
74	GO:0005525: GTP binding	4.35E-02
75	GO:0003924: GTPase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.12E-19
2	GO:0009570: chloroplast stroma	7.13E-12
3	GO:0009941: chloroplast envelope	9.61E-07
4	GO:0080085: signal recognition particle, chloroplast targeting	1.62E-06
5	GO:0009535: chloroplast thylakoid membrane	5.86E-06
6	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.81E-04
7	GO:0070765: gamma-secretase complex	1.84E-04
8	GO:0009534: chloroplast thylakoid	4.57E-04
9	GO:0009528: plastid inner membrane	6.76E-04
10	GO:0010007: magnesium chelatase complex	6.76E-04
11	GO:0032432: actin filament bundle	9.65E-04
12	GO:0009526: plastid envelope	1.28E-03
13	GO:0009527: plastid outer membrane	1.28E-03
14	GO:0055035: plastid thylakoid membrane	1.63E-03
15	GO:0009579: thylakoid	1.88E-03
16	GO:0009543: chloroplast thylakoid lumen	2.01E-03
17	GO:0010319: stromule	2.23E-03
18	GO:0042807: central vacuole	2.83E-03
19	GO:0000326: protein storage vacuole	3.75E-03
20	GO:0031977: thylakoid lumen	4.88E-03
21	GO:0005884: actin filament	5.85E-03
22	GO:0000311: plastid large ribosomal subunit	6.43E-03
23	GO:0031969: chloroplast membrane	6.92E-03
24	GO:0009508: plastid chromosome	7.03E-03
25	GO:0005578: proteinaceous extracellular matrix	7.03E-03
26	GO:0030095: chloroplast photosystem II	7.64E-03
27	GO:0009654: photosystem II oxygen evolving complex	1.03E-02
28	GO:0009532: plastid stroma	1.10E-02
29	GO:0031225: anchored component of membrane	1.14E-02
30	GO:0015629: actin cytoskeleton	1.25E-02
31	GO:0005623: cell	1.31E-02
32	GO:0019898: extrinsic component of membrane	1.73E-02
33	GO:0031965: nuclear membrane	1.73E-02
34	GO:0009705: plant-type vacuole membrane	1.76E-02
35	GO:0009295: nucleoid	2.17E-02
36	GO:0046658: anchored component of plasma membrane	2.34E-02
37	GO:0030529: intracellular ribonucleoprotein complex	2.35E-02
38	GO:0009707: chloroplast outer membrane	2.84E-02
39	GO:0015934: large ribosomal subunit	3.15E-02
40	GO:0005856: cytoskeleton	4.38E-02