co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002084: protein depalmitoylation	0.00E+00
2	GO:0046680: response to DDT	0.00E+00
3	GO:0042176: regulation of protein catabolic process	4.50E-06
4	GO:1900384: regulation of flavonol biosynthetic process	3.77E-05
5	GO:0035266: meristem growth	3.77E-05
6	GO:0007292: female gamete generation	3.77E-05
7	GO:0042350: GDP-L-fucose biosynthetic process	3.77E-05
8	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.77E-05
9	GO:0000032: cell wall mannoprotein biosynthetic process	3.77E-05
10	GO:0006511: ubiquitin-dependent protein catabolic process	3.83E-05
11	GO:0010053: root epidermal cell differentiation	6.46E-05
12	GO:0009156: ribonucleoside monophosphate biosynthetic process	9.40E-05
13	GO:0009805: coumarin biosynthetic process	9.40E-05
14	GO:0042853: L-alanine catabolic process	9.40E-05
15	GO:0051788: response to misfolded protein	9.40E-05
16	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.63E-04
17	GO:0010253: UDP-rhamnose biosynthetic process	1.63E-04
18	GO:0033591: response to L-ascorbic acid	1.63E-04
19	GO:0060968: regulation of gene silencing	1.63E-04
20	GO:0009226: nucleotide-sugar biosynthetic process	2.40E-04
21	GO:0009298: GDP-mannose biosynthetic process	2.40E-04
22	GO:0030163: protein catabolic process	2.53E-04
23	GO:0009165: nucleotide biosynthetic process	3.24E-04
24	GO:0070534: protein K63-linked ubiquitination	3.24E-04
25	GO:0010363: regulation of plant-type hypersensitive response	3.24E-04
26	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.07E-04
27	GO:0006301: postreplication repair	5.07E-04
28	GO:0048827: phyllome development	5.07E-04
29	GO:0048232: male gamete generation	5.07E-04
30	GO:0006555: methionine metabolic process	5.07E-04
31	GO:0043248: proteasome assembly	5.07E-04
32	GO:0010315: auxin efflux	5.07E-04
33	GO:0019509: L-methionine salvage from methylthioadenosine	6.05E-04
34	GO:0006401: RNA catabolic process	7.07E-04
35	GO:0010078: maintenance of root meristem identity	8.13E-04
36	GO:0009699: phenylpropanoid biosynthetic process	9.23E-04
37	GO:0006002: fructose 6-phosphate metabolic process	9.23E-04
38	GO:0015996: chlorophyll catabolic process	9.23E-04
39	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.04E-03
40	GO:0046686: response to cadmium ion	1.28E-03
41	GO:0048829: root cap development	1.28E-03
42	GO:0051555: flavonol biosynthetic process	1.28E-03
43	GO:0010015: root morphogenesis	1.40E-03
44	GO:0000266: mitochondrial fission	1.53E-03
45	GO:0055046: microgametogenesis	1.67E-03
46	GO:0034605: cellular response to heat	1.81E-03
47	GO:0009933: meristem structural organization	1.81E-03
48	GO:0019853: L-ascorbic acid biosynthetic process	1.95E-03
49	GO:0010039: response to iron ion	1.95E-03
50	GO:0090351: seedling development	1.95E-03
51	GO:0009225: nucleotide-sugar metabolic process	1.95E-03
52	GO:0009116: nucleoside metabolic process	2.25E-03
53	GO:0009814: defense response, incompatible interaction	2.72E-03
54	GO:0030433: ubiquitin-dependent ERAD pathway	2.72E-03
55	GO:0019748: secondary metabolic process	2.72E-03
56	GO:0042127: regulation of cell proliferation	3.05E-03
57	GO:0009646: response to absence of light	3.76E-03
58	GO:0016032: viral process	4.32E-03
59	GO:0001666: response to hypoxia	5.31E-03
60	GO:0010311: lateral root formation	6.60E-03
61	GO:0006499: N-terminal protein myristoylation	6.82E-03
62	GO:0010043: response to zinc ion	7.05E-03
63	GO:0007568: aging	7.05E-03
64	GO:0045087: innate immune response	7.51E-03
65	GO:0006631: fatty acid metabolic process	8.47E-03
66	GO:0009744: response to sucrose	8.96E-03
67	GO:0051707: response to other organism	8.96E-03
68	GO:0009965: leaf morphogenesis	9.73E-03
69	GO:0009738: abscisic acid-activated signaling pathway	1.02E-02
70	GO:0006486: protein glycosylation	1.11E-02
71	GO:0006096: glycolytic process	1.24E-02
72	GO:0048367: shoot system development	1.27E-02
73	GO:0009058: biosynthetic process	1.73E-02
74	GO:0009651: response to salt stress	1.78E-02
75	GO:0009414: response to water deprivation	2.10E-02
76	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.26E-02
77	GO:0030154: cell differentiation	2.34E-02
78	GO:0009617: response to bacterium	2.37E-02
79	GO:0007049: cell cycle	3.08E-02
80	GO:0016192: vesicle-mediated transport	3.45E-02
81	GO:0006886: intracellular protein transport	3.86E-02
82	GO:0055114: oxidation-reduction process	4.10E-02
83	GO:0007275: multicellular organism development	4.21E-02
84	GO:0009751: response to salicylic acid	4.34E-02
85	GO:0009408: response to heat	4.39E-02
86	GO:0048364: root development	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0030234: enzyme regulator activity	2.99E-05
2	GO:0004476: mannose-6-phosphate isomerase activity	3.77E-05
3	GO:0050577: GDP-L-fucose synthase activity	3.77E-05
4	GO:0102293: pheophytinase b activity	3.77E-05
5	GO:0047746: chlorophyllase activity	9.40E-05
6	GO:0010297: heteropolysaccharide binding	9.40E-05
7	GO:0008460: dTDP-glucose 4,6-dehydratase activity	9.40E-05
8	GO:0010280: UDP-L-rhamnose synthase activity	9.40E-05
9	GO:0050377: UDP-glucose 4,6-dehydratase activity	9.40E-05
10	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.63E-04
11	GO:0016853: isomerase activity	1.91E-04
12	GO:0004749: ribose phosphate diphosphokinase activity	2.40E-04
13	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	2.40E-04
14	GO:0036402: proteasome-activating ATPase activity	5.07E-04
15	GO:0008474: palmitoyl-(protein) hydrolase activity	5.07E-04
16	GO:0003950: NAD+ ADP-ribosyltransferase activity	6.05E-04
17	GO:0003872: 6-phosphofructokinase activity	7.07E-04
18	GO:0031625: ubiquitin protein ligase binding	9.88E-04
19	GO:0045309: protein phosphorylated amino acid binding	1.15E-03
20	GO:0019904: protein domain specific binding	1.40E-03
21	GO:0017025: TBP-class protein binding	1.95E-03
22	GO:0050662: coenzyme binding	3.76E-03
23	GO:0061630: ubiquitin protein ligase activity	4.26E-03
24	GO:0004518: nuclease activity	4.32E-03
25	GO:0008237: metallopeptidase activity	4.90E-03
26	GO:0051213: dioxygenase activity	5.31E-03
27	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.51E-03
28	GO:0030246: carbohydrate binding	1.43E-02
29	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.69E-02
30	GO:0030170: pyridoxal phosphate binding	1.79E-02
31	GO:0044212: transcription regulatory region DNA binding	2.15E-02
32	GO:0008017: microtubule binding	2.16E-02
33	GO:0003824: catalytic activity	2.36E-02
34	GO:0000287: magnesium ion binding	2.81E-02
35	GO:0016491: oxidoreductase activity	2.83E-02
36	GO:0004842: ubiquitin-protein transferase activity	2.97E-02
37	GO:0004497: monooxygenase activity	3.32E-02
38	GO:0052689: carboxylic ester hydrolase activity	3.57E-02
39	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.78E-02
40	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	4.08E-02
41	GO:0005524: ATP binding	4.09E-02
42	GO:0003924: GTPase activity	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0008541: proteasome regulatory particle, lid subcomplex	2.71E-07
2	GO:0000502: proteasome complex	1.51E-06
3	GO:0030130: clathrin coat of trans-Golgi network vesicle	1.63E-04
4	GO:0030132: clathrin coat of coated pit	1.63E-04
5	GO:0031372: UBC13-MMS2 complex	3.24E-04
6	GO:0005945: 6-phosphofructokinase complex	4.13E-04
7	GO:0000813: ESCRT I complex	4.13E-04
8	GO:0031597: cytosolic proteasome complex	6.05E-04
9	GO:0031595: nuclear proteasome complex	7.07E-04
10	GO:0008540: proteasome regulatory particle, base subcomplex	1.15E-03
11	GO:0005737: cytoplasm	2.88E-03
12	GO:0009506: plasmodesma	9.90E-03
13	GO:0005635: nuclear envelope	1.16E-02
14	GO:0005634: nucleus	1.34E-02
15	GO:0009524: phragmoplast	1.73E-02
16	GO:0005886: plasma membrane	2.96E-02
17	GO:0005773: vacuole	3.17E-02
18	GO:0005874: microtubule	3.24E-02
19	GO:0005789: endoplasmic reticulum membrane	3.28E-02
20	GO:0031969: chloroplast membrane	3.32E-02
21	GO:0005829: cytosol	4.97E-02