co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:0006903: vesicle targeting	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
5	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
6	GO:0006102: isocitrate metabolic process	7.70E-05
7	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.22E-04
8	GO:0042964: thioredoxin reduction	1.22E-04
9	GO:0006099: tricarboxylic acid cycle	2.44E-04
10	GO:0015709: thiosulfate transport	2.82E-04
11	GO:0071422: succinate transmembrane transport	2.82E-04
12	GO:0046939: nucleotide phosphorylation	2.82E-04
13	GO:0006568: tryptophan metabolic process	2.82E-04
14	GO:0009805: coumarin biosynthetic process	2.82E-04
15	GO:0080026: response to indolebutyric acid	2.82E-04
16	GO:0090630: activation of GTPase activity	4.65E-04
17	GO:0006517: protein deglycosylation	4.65E-04
18	GO:0009062: fatty acid catabolic process	4.65E-04
19	GO:0010359: regulation of anion channel activity	4.65E-04
20	GO:0010227: floral organ abscission	6.02E-04
21	GO:0000187: activation of MAPK activity	6.66E-04
22	GO:0015729: oxaloacetate transport	6.66E-04
23	GO:0006612: protein targeting to membrane	6.66E-04
24	GO:0006893: Golgi to plasma membrane transport	6.66E-04
25	GO:0080024: indolebutyric acid metabolic process	6.66E-04
26	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	8.84E-04
27	GO:0010222: stem vascular tissue pattern formation	8.84E-04
28	GO:0006085: acetyl-CoA biosynthetic process	8.84E-04
29	GO:0009751: response to salicylic acid	9.90E-04
30	GO:0071423: malate transmembrane transport	1.12E-03
31	GO:0046283: anthocyanin-containing compound metabolic process	1.12E-03
32	GO:0005513: detection of calcium ion	1.12E-03
33	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.12E-03
34	GO:1901657: glycosyl compound metabolic process	1.13E-03
35	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.37E-03
36	GO:0006555: methionine metabolic process	1.37E-03
37	GO:0035435: phosphate ion transmembrane transport	1.37E-03
38	GO:0060918: auxin transport	1.37E-03
39	GO:0006139: nucleobase-containing compound metabolic process	1.37E-03
40	GO:0009972: cytidine deamination	1.37E-03
41	GO:0009554: megasporogenesis	1.64E-03
42	GO:0019509: L-methionine salvage from methylthioadenosine	1.64E-03
43	GO:0009612: response to mechanical stimulus	1.64E-03
44	GO:0009082: branched-chain amino acid biosynthetic process	1.64E-03
45	GO:0009099: valine biosynthetic process	1.64E-03
46	GO:0006888: ER to Golgi vesicle-mediated transport	1.67E-03
47	GO:0071669: plant-type cell wall organization or biogenesis	1.92E-03
48	GO:0008272: sulfate transport	1.92E-03
49	GO:0006499: N-terminal protein myristoylation	2.03E-03
50	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.22E-03
51	GO:0006491: N-glycan processing	2.22E-03
52	GO:0009699: phenylpropanoid biosynthetic process	2.54E-03
53	GO:0022900: electron transport chain	2.54E-03
54	GO:0060321: acceptance of pollen	2.54E-03
55	GO:0019430: removal of superoxide radicals	2.54E-03
56	GO:0006367: transcription initiation from RNA polymerase II promoter	2.54E-03
57	GO:0009097: isoleucine biosynthetic process	2.54E-03
58	GO:0046685: response to arsenic-containing substance	2.87E-03
59	GO:0009821: alkaloid biosynthetic process	2.87E-03
60	GO:0000209: protein polyubiquitination	3.11E-03
61	GO:0009098: leucine biosynthetic process	3.21E-03
62	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.21E-03
63	GO:0009688: abscisic acid biosynthetic process	3.57E-03
64	GO:0043069: negative regulation of programmed cell death	3.57E-03
65	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.61E-03
66	GO:0046686: response to cadmium ion	3.71E-03
67	GO:0009846: pollen germination	3.75E-03
68	GO:0016925: protein sumoylation	4.32E-03
69	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	4.32E-03
70	GO:0006790: sulfur compound metabolic process	4.32E-03
71	GO:0055046: microgametogenesis	4.71E-03
72	GO:0010102: lateral root morphogenesis	4.71E-03
73	GO:0006807: nitrogen compound metabolic process	4.71E-03
74	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.71E-03
75	GO:0046854: phosphatidylinositol phosphorylation	5.54E-03
76	GO:0007031: peroxisome organization	5.54E-03
77	GO:0007030: Golgi organization	5.54E-03
78	GO:0010167: response to nitrate	5.54E-03
79	GO:0000162: tryptophan biosynthetic process	5.98E-03
80	GO:0015992: proton transport	7.34E-03
81	GO:0009058: biosynthetic process	7.52E-03
82	GO:0019748: secondary metabolic process	7.81E-03
83	GO:0009814: defense response, incompatible interaction	7.81E-03
84	GO:0030433: ubiquitin-dependent ERAD pathway	7.81E-03
85	GO:0009561: megagametogenesis	8.80E-03
86	GO:0009306: protein secretion	8.80E-03
87	GO:0010051: xylem and phloem pattern formation	9.83E-03
88	GO:0015031: protein transport	1.01E-02
89	GO:0045489: pectin biosynthetic process	1.04E-02
90	GO:0048544: recognition of pollen	1.09E-02
91	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.10E-02
92	GO:0009851: auxin biosynthetic process	1.15E-02
93	GO:0006635: fatty acid beta-oxidation	1.20E-02
94	GO:0030163: protein catabolic process	1.32E-02
95	GO:0006464: cellular protein modification process	1.38E-02
96	GO:0006904: vesicle docking involved in exocytosis	1.44E-02
97	GO:0009615: response to virus	1.56E-02
98	GO:0009860: pollen tube growth	1.65E-02
99	GO:0006511: ubiquitin-dependent protein catabolic process	1.66E-02
100	GO:0016049: cell growth	1.82E-02
101	GO:0048767: root hair elongation	1.95E-02
102	GO:0016192: vesicle-mediated transport	2.00E-02
103	GO:0009407: toxin catabolic process	2.02E-02
104	GO:0046777: protein autophosphorylation	2.03E-02
105	GO:0009631: cold acclimation	2.09E-02
106	GO:0010119: regulation of stomatal movement	2.09E-02
107	GO:0045087: innate immune response	2.23E-02
108	GO:0006839: mitochondrial transport	2.44E-02
109	GO:0006887: exocytosis	2.52E-02
110	GO:0051707: response to other organism	2.67E-02
111	GO:0006629: lipid metabolic process	2.81E-02
112	GO:0009636: response to toxic substance	2.90E-02
113	GO:0000165: MAPK cascade	3.06E-02
114	GO:0031347: regulation of defense response	3.06E-02
115	GO:0051603: proteolysis involved in cellular protein catabolic process	3.38E-02
116	GO:0006096: glycolytic process	3.72E-02
117	GO:0048316: seed development	3.80E-02
118	GO:0009626: plant-type hypersensitive response	3.89E-02
119	GO:0009620: response to fungus	3.98E-02
120	GO:0006396: RNA processing	4.33E-02
121	GO:0018105: peptidyl-serine phosphorylation	4.33E-02
122	GO:0051726: regulation of cell cycle	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0019205: nucleobase-containing compound kinase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0047844: deoxycytidine deaminase activity	0.00E+00
6	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.65E-06
7	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.22E-04
8	GO:0048037: cofactor binding	1.22E-04
9	GO:0004640: phosphoribosylanthranilate isomerase activity	2.82E-04
10	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.82E-04
11	GO:0052739: phosphatidylserine 1-acylhydrolase activity	2.82E-04
12	GO:0010297: heteropolysaccharide binding	2.82E-04
13	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	2.82E-04
14	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.82E-04
15	GO:0015117: thiosulfate transmembrane transporter activity	2.82E-04
16	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.82E-04
17	GO:1901677: phosphate transmembrane transporter activity	2.82E-04
18	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.65E-04
19	GO:0005310: dicarboxylic acid transmembrane transporter activity	4.65E-04
20	GO:0015141: succinate transmembrane transporter activity	4.65E-04
21	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.65E-04
22	GO:0004165: dodecenoyl-CoA delta-isomerase activity	6.66E-04
23	GO:0052654: L-leucine transaminase activity	6.66E-04
24	GO:0017077: oxidative phosphorylation uncoupler activity	6.66E-04
25	GO:0052655: L-valine transaminase activity	6.66E-04
26	GO:0003878: ATP citrate synthase activity	6.66E-04
27	GO:0019201: nucleotide kinase activity	6.66E-04
28	GO:0015131: oxaloacetate transmembrane transporter activity	6.66E-04
29	GO:0052656: L-isoleucine transaminase activity	6.66E-04
30	GO:0004084: branched-chain-amino-acid transaminase activity	8.84E-04
31	GO:0070628: proteasome binding	8.84E-04
32	GO:0008022: protein C-terminus binding	8.84E-04
33	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	8.84E-04
34	GO:0004031: aldehyde oxidase activity	8.84E-04
35	GO:0050302: indole-3-acetaldehyde oxidase activity	8.84E-04
36	GO:0031386: protein tag	1.12E-03
37	GO:0008374: O-acyltransferase activity	1.12E-03
38	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.37E-03
39	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.37E-03
40	GO:0035252: UDP-xylosyltransferase activity	1.37E-03
41	GO:0036402: proteasome-activating ATPase activity	1.37E-03
42	GO:0004126: cytidine deaminase activity	1.64E-03
43	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.64E-03
44	GO:0004017: adenylate kinase activity	1.64E-03
45	GO:0004656: procollagen-proline 4-dioxygenase activity	1.64E-03
46	GO:0102483: scopolin beta-glucosidase activity	1.67E-03
47	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.92E-03
48	GO:0015140: malate transmembrane transporter activity	1.92E-03
49	GO:0004708: MAP kinase kinase activity	2.22E-03
50	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.22E-03
51	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.33E-03
52	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	2.54E-03
53	GO:0008422: beta-glucosidase activity	2.54E-03
54	GO:0030955: potassium ion binding	3.21E-03
55	GO:0016844: strictosidine synthase activity	3.21E-03
56	GO:0004743: pyruvate kinase activity	3.21E-03
57	GO:0005198: structural molecule activity	3.36E-03
58	GO:0061630: ubiquitin protein ligase activity	3.54E-03
59	GO:0015116: sulfate transmembrane transporter activity	4.32E-03
60	GO:0004722: protein serine/threonine phosphatase activity	4.69E-03
61	GO:0031624: ubiquitin conjugating enzyme binding	5.12E-03
62	GO:0017025: TBP-class protein binding	5.54E-03
63	GO:0031418: L-ascorbic acid binding	6.42E-03
64	GO:0004298: threonine-type endopeptidase activity	7.34E-03
65	GO:0003824: catalytic activity	8.07E-03
66	GO:0004791: thioredoxin-disulfide reductase activity	1.09E-02
67	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.44E-02
68	GO:0000287: magnesium ion binding	1.50E-02
69	GO:0051213: dioxygenase activity	1.56E-02
70	GO:0043531: ADP binding	1.68E-02
71	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.69E-02
72	GO:0004683: calmodulin-dependent protein kinase activity	1.75E-02
73	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.75E-02
74	GO:0005096: GTPase activator activity	1.95E-02
75	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.09E-02
76	GO:0003993: acid phosphatase activity	2.30E-02
77	GO:0005509: calcium ion binding	2.48E-02
78	GO:0005524: ATP binding	2.50E-02
79	GO:0004364: glutathione transferase activity	2.59E-02
80	GO:0051537: 2 iron, 2 sulfur cluster binding	2.82E-02
81	GO:0051287: NAD binding	3.06E-02
82	GO:0016298: lipase activity	3.38E-02
83	GO:0031625: ubiquitin protein ligase binding	3.55E-02
84	GO:0016301: kinase activity	4.01E-02
85	GO:0022857: transmembrane transporter activity	4.06E-02
86	GO:0008270: zinc ion binding	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0005802: trans-Golgi network	2.41E-04
2	GO:0005768: endosome	3.18E-04
3	GO:0000502: proteasome complex	4.76E-04
4	GO:0005839: proteasome core complex	5.06E-04
5	GO:0009346: citrate lyase complex	6.66E-04
6	GO:0005829: cytosol	8.13E-04
7	GO:0005886: plasma membrane	1.04E-03
8	GO:0031597: cytosolic proteasome complex	1.64E-03
9	GO:0030173: integral component of Golgi membrane	1.64E-03
10	GO:0031595: nuclear proteasome complex	1.92E-03
11	GO:0031982: vesicle	2.22E-03
12	GO:0019773: proteasome core complex, alpha-subunit complex	2.54E-03
13	GO:0031901: early endosome membrane	2.87E-03
14	GO:0031090: organelle membrane	2.87E-03
15	GO:0008540: proteasome regulatory particle, base subcomplex	3.21E-03
16	GO:0005794: Golgi apparatus	3.27E-03
17	GO:0005750: mitochondrial respiratory chain complex III	5.12E-03
18	GO:0000145: exocyst	1.26E-02
19	GO:0016592: mediator complex	1.26E-02
20	GO:0005778: peroxisomal membrane	1.44E-02
21	GO:0030529: intracellular ribonucleoprotein complex	1.56E-02
22	GO:0000151: ubiquitin ligase complex	1.88E-02
23	GO:0005856: cytoskeleton	2.90E-02
24	GO:0005773: vacuole	3.05E-02
25	GO:0005737: cytoplasm	3.52E-02
26	GO:0000139: Golgi membrane	4.00E-02