co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01995

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0042820: vitamin B6 catabolic process	0.00E+00
10	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:1905177: tracheary element differentiation	0.00E+00
13	GO:0008298: intracellular mRNA localization	0.00E+00
14	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
15	GO:0010027: thylakoid membrane organization	4.09E-06
16	GO:0015979: photosynthesis	5.47E-05
17	GO:0045038: protein import into chloroplast thylakoid membrane	1.08E-04
18	GO:0009658: chloroplast organization	1.46E-04
19	GO:0070574: cadmium ion transmembrane transport	3.29E-04
20	GO:0051247: positive regulation of protein metabolic process	3.29E-04
21	GO:1902458: positive regulation of stomatal opening	3.29E-04
22	GO:2000905: negative regulation of starch metabolic process	3.29E-04
23	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.29E-04
24	GO:0009443: pyridoxal 5'-phosphate salvage	3.29E-04
25	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.29E-04
26	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.29E-04
27	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.29E-04
28	GO:0051775: response to redox state	3.29E-04
29	GO:0043266: regulation of potassium ion transport	3.29E-04
30	GO:0006659: phosphatidylserine biosynthetic process	3.29E-04
31	GO:0042371: vitamin K biosynthetic process	3.29E-04
32	GO:2000021: regulation of ion homeostasis	3.29E-04
33	GO:0006605: protein targeting	3.48E-04
34	GO:0071482: cellular response to light stimulus	4.26E-04
35	GO:0001682: tRNA 5'-leader removal	7.18E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.18E-04
37	GO:0006568: tryptophan metabolic process	7.18E-04
38	GO:0010024: phytochromobilin biosynthetic process	7.18E-04
39	GO:1900871: chloroplast mRNA modification	7.18E-04
40	GO:0018026: peptidyl-lysine monomethylation	7.18E-04
41	GO:1904143: positive regulation of carotenoid biosynthetic process	7.18E-04
42	GO:0019684: photosynthesis, light reaction	8.13E-04
43	GO:0043085: positive regulation of catalytic activity	8.13E-04
44	GO:0009767: photosynthetic electron transport chain	1.05E-03
45	GO:0005977: glycogen metabolic process	1.16E-03
46	GO:0048586: regulation of long-day photoperiodism, flowering	1.16E-03
47	GO:0006954: inflammatory response	1.16E-03
48	GO:0006788: heme oxidation	1.16E-03
49	GO:0034051: negative regulation of plant-type hypersensitive response	1.16E-03
50	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.16E-03
51	GO:0010623: programmed cell death involved in cell development	1.16E-03
52	GO:0006760: folic acid-containing compound metabolic process	1.16E-03
53	GO:0010207: photosystem II assembly	1.18E-03
54	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.67E-03
55	GO:0006166: purine ribonucleoside salvage	1.67E-03
56	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.67E-03
57	GO:0006107: oxaloacetate metabolic process	1.67E-03
58	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.67E-03
59	GO:0010306: rhamnogalacturonan II biosynthetic process	1.67E-03
60	GO:0009226: nucleotide-sugar biosynthetic process	1.67E-03
61	GO:0016556: mRNA modification	1.67E-03
62	GO:0006168: adenine salvage	1.67E-03
63	GO:2001141: regulation of RNA biosynthetic process	1.67E-03
64	GO:0090308: regulation of methylation-dependent chromatin silencing	1.67E-03
65	GO:0010431: seed maturation	1.97E-03
66	GO:0010109: regulation of photosynthesis	2.24E-03
67	GO:0009765: photosynthesis, light harvesting	2.24E-03
68	GO:2000306: positive regulation of photomorphogenesis	2.24E-03
69	GO:0006109: regulation of carbohydrate metabolic process	2.24E-03
70	GO:0010107: potassium ion import	2.24E-03
71	GO:0031122: cytoplasmic microtubule organization	2.24E-03
72	GO:0006546: glycine catabolic process	2.24E-03
73	GO:0046656: folic acid biosynthetic process	2.24E-03
74	GO:0007219: Notch signaling pathway	2.24E-03
75	GO:0010508: positive regulation of autophagy	2.24E-03
76	GO:0006021: inositol biosynthetic process	2.24E-03
77	GO:0006734: NADH metabolic process	2.24E-03
78	GO:0010021: amylopectin biosynthetic process	2.24E-03
79	GO:0016123: xanthophyll biosynthetic process	2.87E-03
80	GO:0044209: AMP salvage	2.87E-03
81	GO:0032876: negative regulation of DNA endoreduplication	2.87E-03
82	GO:0080110: sporopollenin biosynthetic process	2.87E-03
83	GO:0098719: sodium ion import across plasma membrane	2.87E-03
84	GO:0010087: phloem or xylem histogenesis	3.00E-03
85	GO:0009646: response to absence of light	3.47E-03
86	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.54E-03
87	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.54E-03
88	GO:0006655: phosphatidylglycerol biosynthetic process	3.54E-03
89	GO:0010190: cytochrome b6f complex assembly	3.54E-03
90	GO:0032973: amino acid export	3.54E-03
91	GO:0000741: karyogamy	3.54E-03
92	GO:0050665: hydrogen peroxide biosynthetic process	3.54E-03
93	GO:0009791: post-embryonic development	3.72E-03
94	GO:0019252: starch biosynthetic process	3.72E-03
95	GO:0008654: phospholipid biosynthetic process	3.72E-03
96	GO:0032502: developmental process	4.26E-03
97	GO:0017148: negative regulation of translation	4.26E-03
98	GO:1901259: chloroplast rRNA processing	4.26E-03
99	GO:0048280: vesicle fusion with Golgi apparatus	4.26E-03
100	GO:0046654: tetrahydrofolate biosynthetic process	4.26E-03
101	GO:0010189: vitamin E biosynthetic process	4.26E-03
102	GO:0009854: oxidative photosynthetic carbon pathway	4.26E-03
103	GO:0043090: amino acid import	5.03E-03
104	GO:0055075: potassium ion homeostasis	5.85E-03
105	GO:0048564: photosystem I assembly	5.85E-03
106	GO:0009690: cytokinin metabolic process	5.85E-03
107	GO:0006875: cellular metal ion homeostasis	5.85E-03
108	GO:0010078: maintenance of root meristem identity	5.85E-03
109	GO:0032875: regulation of DNA endoreduplication	5.85E-03
110	GO:2000070: regulation of response to water deprivation	5.85E-03
111	GO:0043562: cellular response to nitrogen levels	6.71E-03
112	GO:0017004: cytochrome complex assembly	6.71E-03
113	GO:0015996: chlorophyll catabolic process	6.71E-03
114	GO:0007186: G-protein coupled receptor signaling pathway	6.71E-03
115	GO:0009657: plastid organization	6.71E-03
116	GO:0010204: defense response signaling pathway, resistance gene-independent	6.71E-03
117	GO:0015995: chlorophyll biosynthetic process	6.79E-03
118	GO:0018298: protein-chromophore linkage	7.52E-03
119	GO:0010206: photosystem II repair	7.60E-03
120	GO:0080144: amino acid homeostasis	7.60E-03
121	GO:0090333: regulation of stomatal closure	7.60E-03
122	GO:0051453: regulation of intracellular pH	8.55E-03
123	GO:0006896: Golgi to vacuole transport	9.53E-03
124	GO:0019538: protein metabolic process	9.53E-03
125	GO:0034599: cellular response to oxidative stress	9.99E-03
126	GO:0010216: maintenance of DNA methylation	1.06E-02
127	GO:0009684: indoleacetic acid biosynthetic process	1.06E-02
128	GO:0009089: lysine biosynthetic process via diaminopimelate	1.06E-02
129	GO:0006415: translational termination	1.06E-02
130	GO:0006352: DNA-templated transcription, initiation	1.06E-02
131	GO:0016485: protein processing	1.06E-02
132	GO:0030001: metal ion transport	1.09E-02
133	GO:0005983: starch catabolic process	1.16E-02
134	GO:0016024: CDP-diacylglycerol biosynthetic process	1.16E-02
135	GO:0045037: protein import into chloroplast stroma	1.16E-02
136	GO:0010588: cotyledon vascular tissue pattern formation	1.27E-02
137	GO:0006108: malate metabolic process	1.27E-02
138	GO:0048467: gynoecium development	1.38E-02
139	GO:0006541: glutamine metabolic process	1.38E-02
140	GO:0019853: L-ascorbic acid biosynthetic process	1.50E-02
141	GO:0010030: positive regulation of seed germination	1.50E-02
142	GO:0055114: oxidation-reduction process	1.67E-02
143	GO:0008299: isoprenoid biosynthetic process	1.87E-02
144	GO:0030245: cellulose catabolic process	2.14E-02
145	GO:0006730: one-carbon metabolic process	2.14E-02
146	GO:0006012: galactose metabolic process	2.27E-02
147	GO:0009686: gibberellin biosynthetic process	2.27E-02
148	GO:0010089: xylem development	2.41E-02
149	GO:0010584: pollen exine formation	2.41E-02
150	GO:0019722: calcium-mediated signaling	2.41E-02
151	GO:0009561: megagametogenesis	2.41E-02
152	GO:0009306: protein secretion	2.41E-02
153	GO:0016117: carotenoid biosynthetic process	2.55E-02
154	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.55E-02
155	GO:0042147: retrograde transport, endosome to Golgi	2.55E-02
156	GO:0042631: cellular response to water deprivation	2.70E-02
157	GO:0080022: primary root development	2.70E-02
158	GO:0008033: tRNA processing	2.70E-02
159	GO:0010182: sugar mediated signaling pathway	2.85E-02
160	GO:0048868: pollen tube development	2.85E-02
161	GO:0009741: response to brassinosteroid	2.85E-02
162	GO:0010268: brassinosteroid homeostasis	2.85E-02
163	GO:0009958: positive gravitropism	2.85E-02
164	GO:0006885: regulation of pH	2.85E-02
165	GO:0045489: pectin biosynthetic process	2.85E-02
166	GO:0006662: glycerol ether metabolic process	2.85E-02
167	GO:0010197: polar nucleus fusion	2.85E-02
168	GO:0006814: sodium ion transport	3.00E-02
169	GO:0055072: iron ion homeostasis	3.15E-02
170	GO:0009851: auxin biosynthetic process	3.15E-02
171	GO:0006623: protein targeting to vacuole	3.15E-02
172	GO:0048825: cotyledon development	3.15E-02
173	GO:0009845: seed germination	3.22E-02
174	GO:0016132: brassinosteroid biosynthetic process	3.31E-02
175	GO:0000302: response to reactive oxygen species	3.31E-02
176	GO:0006891: intra-Golgi vesicle-mediated transport	3.31E-02
177	GO:0042744: hydrogen peroxide catabolic process	3.39E-02
178	GO:0010090: trichome morphogenesis	3.63E-02
179	GO:0016125: sterol metabolic process	3.79E-02
180	GO:0006810: transport	3.90E-02
181	GO:0007267: cell-cell signaling	3.96E-02
182	GO:0010029: regulation of seed germination	4.47E-02
183	GO:0006888: ER to Golgi vesicle-mediated transport	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
4	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0005528: FK506 binding	5.33E-06
9	GO:0070402: NADPH binding	1.74E-05
10	GO:0016851: magnesium chelatase activity	3.86E-05
11	GO:0043495: protein anchor	6.89E-05
12	GO:0019899: enzyme binding	2.76E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.29E-04
14	GO:0051777: ent-kaurenoate oxidase activity	3.29E-04
15	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.29E-04
16	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.29E-04
17	GO:0008568: microtubule-severing ATPase activity	3.29E-04
18	GO:0050308: sugar-phosphatase activity	3.29E-04
19	GO:0019203: carbohydrate phosphatase activity	3.29E-04
20	GO:0005080: protein kinase C binding	3.29E-04
21	GO:0008242: omega peptidase activity	3.29E-04
22	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.29E-04
23	GO:0008746: NAD(P)+ transhydrogenase activity	3.29E-04
24	GO:0004328: formamidase activity	3.29E-04
25	GO:0004033: aldo-keto reductase (NADP) activity	3.48E-04
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.64E-04
27	GO:0080041: ADP-ribose pyrophosphohydrolase activity	7.18E-04
28	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.18E-04
29	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.18E-04
30	GO:0004047: aminomethyltransferase activity	7.18E-04
31	GO:0102083: 7,8-dihydromonapterin aldolase activity	7.18E-04
32	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.18E-04
33	GO:0019156: isoamylase activity	7.18E-04
34	GO:0004150: dihydroneopterin aldolase activity	7.18E-04
35	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.18E-04
36	GO:0004512: inositol-3-phosphate synthase activity	7.18E-04
37	GO:0034722: gamma-glutamyl-peptidase activity	7.18E-04
38	GO:0048531: beta-1,3-galactosyltransferase activity	7.18E-04
39	GO:0010291: carotene beta-ring hydroxylase activity	7.18E-04
40	GO:0004103: choline kinase activity	7.18E-04
41	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.16E-03
42	GO:0004751: ribose-5-phosphate isomerase activity	1.16E-03
43	GO:0043023: ribosomal large subunit binding	1.67E-03
44	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.67E-03
45	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.67E-03
46	GO:0003999: adenine phosphoribosyltransferase activity	1.67E-03
47	GO:0015086: cadmium ion transmembrane transporter activity	1.67E-03
48	GO:0016149: translation release factor activity, codon specific	1.67E-03
49	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.67E-03
50	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.67E-03
51	GO:0016279: protein-lysine N-methyltransferase activity	2.24E-03
52	GO:0001053: plastid sigma factor activity	2.24E-03
53	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.24E-03
54	GO:0004045: aminoacyl-tRNA hydrolase activity	2.24E-03
55	GO:0080032: methyl jasmonate esterase activity	2.24E-03
56	GO:0016987: sigma factor activity	2.24E-03
57	GO:0009011: starch synthase activity	2.24E-03
58	GO:0004392: heme oxygenase (decyclizing) activity	2.24E-03
59	GO:0008891: glycolate oxidase activity	2.24E-03
60	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.24E-03
61	GO:0022891: substrate-specific transmembrane transporter activity	2.36E-03
62	GO:0016846: carbon-sulfur lyase activity	2.87E-03
63	GO:0008200: ion channel inhibitor activity	3.54E-03
64	GO:2001070: starch binding	3.54E-03
65	GO:0004605: phosphatidate cytidylyltransferase activity	3.54E-03
66	GO:0080030: methyl indole-3-acetate esterase activity	3.54E-03
67	GO:0004526: ribonuclease P activity	3.54E-03
68	GO:0004130: cytochrome-c peroxidase activity	3.54E-03
69	GO:0004556: alpha-amylase activity	3.54E-03
70	GO:0004462: lactoylglutathione lyase activity	3.54E-03
71	GO:0016688: L-ascorbate peroxidase activity	3.54E-03
72	GO:0015081: sodium ion transmembrane transporter activity	3.54E-03
73	GO:0016615: malate dehydrogenase activity	3.54E-03
74	GO:0016491: oxidoreductase activity	3.96E-03
75	GO:0048038: quinone binding	3.98E-03
76	GO:0008195: phosphatidate phosphatase activity	4.26E-03
77	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.26E-03
78	GO:0030060: L-malate dehydrogenase activity	4.26E-03
79	GO:0015103: inorganic anion transmembrane transporter activity	5.03E-03
80	GO:0043022: ribosome binding	5.85E-03
81	GO:0016168: chlorophyll binding	6.09E-03
82	GO:0008135: translation factor activity, RNA binding	6.71E-03
83	GO:0003747: translation release factor activity	7.60E-03
84	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.60E-03
85	GO:0003824: catalytic activity	8.17E-03
86	GO:0004743: pyruvate kinase activity	8.55E-03
87	GO:0030955: potassium ion binding	8.55E-03
88	GO:0008047: enzyme activator activity	9.53E-03
89	GO:0015020: glucuronosyltransferase activity	9.53E-03
90	GO:0015386: potassium:proton antiporter activity	1.06E-02
91	GO:0008378: galactosyltransferase activity	1.16E-02
92	GO:0042802: identical protein binding	1.20E-02
93	GO:0031072: heat shock protein binding	1.27E-02
94	GO:0008081: phosphoric diester hydrolase activity	1.27E-02
95	GO:0035091: phosphatidylinositol binding	1.34E-02
96	GO:0004175: endopeptidase activity	1.38E-02
97	GO:0008266: poly(U) RNA binding	1.38E-02
98	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.38E-02
99	GO:0004601: peroxidase activity	1.54E-02
100	GO:0004857: enzyme inhibitor activity	1.75E-02
101	GO:0005509: calcium ion binding	1.79E-02
102	GO:0008810: cellulase activity	2.27E-02
103	GO:0008514: organic anion transmembrane transporter activity	2.41E-02
104	GO:0016746: transferase activity, transferring acyl groups	2.45E-02
105	GO:0047134: protein-disulfide reductase activity	2.55E-02
106	GO:0046873: metal ion transmembrane transporter activity	2.85E-02
107	GO:0008080: N-acetyltransferase activity	2.85E-02
108	GO:0004791: thioredoxin-disulfide reductase activity	3.00E-02
109	GO:0016853: isomerase activity	3.00E-02
110	GO:0050662: coenzyme binding	3.00E-02
111	GO:0010181: FMN binding	3.00E-02
112	GO:0015385: sodium:proton antiporter activity	3.63E-02
113	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.63E-02
114	GO:0008483: transaminase activity	3.96E-02
115	GO:0005525: GTP binding	4.31E-02
116	GO:0008375: acetylglucosaminyltransferase activity	4.65E-02
117	GO:0004721: phosphoprotein phosphatase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.43E-32
3	GO:0009570: chloroplast stroma	4.05E-16
4	GO:0009535: chloroplast thylakoid membrane	1.23E-14
5	GO:0009543: chloroplast thylakoid lumen	8.27E-12
6	GO:0009534: chloroplast thylakoid	6.49E-07
7	GO:0031977: thylakoid lumen	1.26E-06
8	GO:0009579: thylakoid	5.04E-06
9	GO:0009654: photosystem II oxygen evolving complex	6.64E-06
10	GO:0010007: magnesium chelatase complex	1.74E-05
11	GO:0019898: extrinsic component of membrane	3.17E-05
12	GO:0009941: chloroplast envelope	2.67E-04
13	GO:0070765: gamma-secretase complex	3.29E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	3.29E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.12E-04
16	GO:0010319: stromule	6.42E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	7.18E-04
18	GO:0009508: plastid chromosome	1.05E-03
19	GO:0031969: chloroplast membrane	1.12E-03
20	GO:0009528: plastid inner membrane	1.16E-03
21	GO:0030095: chloroplast photosystem II	1.18E-03
22	GO:0030658: transport vesicle membrane	1.67E-03
23	GO:0042651: thylakoid membrane	1.80E-03
24	GO:0009527: plastid outer membrane	2.24E-03
25	GO:0009523: photosystem II	3.72E-03
26	GO:0009295: nucleoid	5.13E-03
27	GO:0030529: intracellular ribonucleoprotein complex	5.76E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	5.85E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.71E-03
30	GO:0009707: chloroplast outer membrane	7.52E-03
31	GO:0005680: anaphase-promoting complex	7.60E-03
32	GO:0005720: nuclear heterochromatin	7.60E-03
33	GO:0016604: nuclear body	8.55E-03
34	GO:0016021: integral component of membrane	1.68E-02
35	GO:0009532: plastid stroma	2.00E-02
36	GO:0009706: chloroplast inner membrane	2.38E-02
37	GO:0009705: plant-type vacuole membrane	4.10E-02