co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01915

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032206: positive regulation of telomere maintenance	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
7	GO:0036172: thiamine salvage	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
10	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
11	GO:0043686: co-translational protein modification	6.04E-04
12	GO:0043087: regulation of GTPase activity	6.04E-04
13	GO:0043609: regulation of carbon utilization	6.04E-04
14	GO:0006436: tryptophanyl-tRNA aminoacylation	6.04E-04
15	GO:0000066: mitochondrial ornithine transport	6.04E-04
16	GO:0034757: negative regulation of iron ion transport	6.04E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	6.04E-04
18	GO:0009090: homoserine biosynthetic process	6.04E-04
19	GO:0019478: D-amino acid catabolic process	6.04E-04
20	GO:0009958: positive gravitropism	1.11E-03
21	GO:0000373: Group II intron splicing	1.23E-03
22	GO:0001736: establishment of planar polarity	1.30E-03
23	GO:0010271: regulation of chlorophyll catabolic process	1.30E-03
24	GO:0042780: tRNA 3'-end processing	2.14E-03
25	GO:0071398: cellular response to fatty acid	2.14E-03
26	GO:0030029: actin filament-based process	2.14E-03
27	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.14E-03
28	GO:0045910: negative regulation of DNA recombination	2.14E-03
29	GO:0006000: fructose metabolic process	2.14E-03
30	GO:0080117: secondary growth	2.14E-03
31	GO:0010582: floral meristem determinacy	2.25E-03
32	GO:0010540: basipetal auxin transport	2.89E-03
33	GO:0009067: aspartate family amino acid biosynthetic process	3.10E-03
34	GO:0051513: regulation of monopolar cell growth	3.10E-03
35	GO:0009102: biotin biosynthetic process	3.10E-03
36	GO:0051639: actin filament network formation	3.10E-03
37	GO:0034059: response to anoxia	3.10E-03
38	GO:0010239: chloroplast mRNA processing	3.10E-03
39	GO:0044211: CTP salvage	3.10E-03
40	GO:0009800: cinnamic acid biosynthetic process	3.10E-03
41	GO:0042989: sequestering of actin monomers	3.10E-03
42	GO:1990019: protein storage vacuole organization	3.10E-03
43	GO:2000904: regulation of starch metabolic process	3.10E-03
44	GO:0005992: trehalose biosynthetic process	4.02E-03
45	GO:0051017: actin filament bundle assembly	4.02E-03
46	GO:0009956: radial pattern formation	4.19E-03
47	GO:0009755: hormone-mediated signaling pathway	4.19E-03
48	GO:0051764: actin crosslink formation	4.19E-03
49	GO:0044206: UMP salvage	4.19E-03
50	GO:0006021: inositol biosynthetic process	4.19E-03
51	GO:0031365: N-terminal protein amino acid modification	5.38E-03
52	GO:0009229: thiamine diphosphate biosynthetic process	5.38E-03
53	GO:0009107: lipoate biosynthetic process	5.38E-03
54	GO:0010438: cellular response to sulfur starvation	5.38E-03
55	GO:0010158: abaxial cell fate specification	5.38E-03
56	GO:0080110: sporopollenin biosynthetic process	5.38E-03
57	GO:0009696: salicylic acid metabolic process	5.38E-03
58	GO:0016131: brassinosteroid metabolic process	5.38E-03
59	GO:0030041: actin filament polymerization	5.38E-03
60	GO:0009926: auxin polar transport	6.16E-03
61	GO:0042546: cell wall biogenesis	6.48E-03
62	GO:0048827: phyllome development	6.67E-03
63	GO:0016554: cytidine to uridine editing	6.67E-03
64	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.67E-03
65	GO:0006559: L-phenylalanine catabolic process	6.67E-03
66	GO:0006206: pyrimidine nucleobase metabolic process	6.67E-03
67	GO:0048831: regulation of shoot system development	6.67E-03
68	GO:0010190: cytochrome b6f complex assembly	6.67E-03
69	GO:0003006: developmental process involved in reproduction	6.67E-03
70	GO:0009228: thiamine biosynthetic process	6.67E-03
71	GO:0009451: RNA modification	7.54E-03
72	GO:0030488: tRNA methylation	8.07E-03
73	GO:0009088: threonine biosynthetic process	8.07E-03
74	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	8.07E-03
75	GO:0009648: photoperiodism	8.07E-03
76	GO:0042372: phylloquinone biosynthetic process	8.07E-03
77	GO:0031930: mitochondria-nucleus signaling pathway	8.07E-03
78	GO:0048509: regulation of meristem development	8.07E-03
79	GO:0015693: magnesium ion transport	9.56E-03
80	GO:0009610: response to symbiotic fungus	9.56E-03
81	GO:0006955: immune response	9.56E-03
82	GO:0010050: vegetative phase change	9.56E-03
83	GO:0010098: suspensor development	9.56E-03
84	GO:0051510: regulation of unidimensional cell growth	9.56E-03
85	GO:0009416: response to light stimulus	1.04E-02
86	GO:0010583: response to cyclopentenone	1.07E-02
87	GO:2000070: regulation of response to water deprivation	1.11E-02
88	GO:0000105: histidine biosynthetic process	1.11E-02
89	GO:0009819: drought recovery	1.11E-02
90	GO:0010439: regulation of glucosinolate biosynthetic process	1.11E-02
91	GO:0046620: regulation of organ growth	1.11E-02
92	GO:0009850: auxin metabolic process	1.11E-02
93	GO:0070413: trehalose metabolism in response to stress	1.11E-02
94	GO:0009690: cytokinin metabolic process	1.11E-02
95	GO:0009639: response to red or far red light	1.21E-02
96	GO:0006002: fructose 6-phosphate metabolic process	1.28E-02
97	GO:0071482: cellular response to light stimulus	1.28E-02
98	GO:0007186: G-protein coupled receptor signaling pathway	1.28E-02
99	GO:0019430: removal of superoxide radicals	1.28E-02
100	GO:0009657: plastid organization	1.28E-02
101	GO:0032544: plastid translation	1.28E-02
102	GO:0009056: catabolic process	1.46E-02
103	GO:0006098: pentose-phosphate shunt	1.46E-02
104	GO:0048507: meristem development	1.46E-02
105	GO:0046916: cellular transition metal ion homeostasis	1.46E-02
106	GO:0016573: histone acetylation	1.64E-02
107	GO:0000723: telomere maintenance	1.64E-02
108	GO:0010018: far-red light signaling pathway	1.64E-02
109	GO:0009086: methionine biosynthetic process	1.64E-02
110	GO:1900865: chloroplast RNA modification	1.64E-02
111	GO:0016571: histone methylation	1.64E-02
112	GO:0010411: xyloglucan metabolic process	1.71E-02
113	GO:0048829: root cap development	1.83E-02
114	GO:0006298: mismatch repair	1.83E-02
115	GO:0010192: mucilage biosynthetic process	1.83E-02
116	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.83E-02
117	GO:0006535: cysteine biosynthetic process from serine	1.83E-02
118	GO:0009734: auxin-activated signaling pathway	2.00E-02
119	GO:0000160: phosphorelay signal transduction system	2.00E-02
120	GO:0009058: biosynthetic process	2.02E-02
121	GO:0048765: root hair cell differentiation	2.03E-02
122	GO:0009682: induced systemic resistance	2.03E-02
123	GO:0009089: lysine biosynthetic process via diaminopimelate	2.03E-02
124	GO:0007568: aging	2.20E-02
125	GO:0006790: sulfur compound metabolic process	2.24E-02
126	GO:0045037: protein import into chloroplast stroma	2.24E-02
127	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.24E-02
128	GO:0006865: amino acid transport	2.31E-02
129	GO:0010229: inflorescence development	2.45E-02
130	GO:0006094: gluconeogenesis	2.45E-02
131	GO:0009266: response to temperature stimulus	2.67E-02
132	GO:0040008: regulation of growth	2.67E-02
133	GO:0048467: gynoecium development	2.67E-02
134	GO:0010020: chloroplast fission	2.67E-02
135	GO:0010207: photosystem II assembly	2.67E-02
136	GO:0009933: meristem structural organization	2.67E-02
137	GO:0006839: mitochondrial transport	2.75E-02
138	GO:0006631: fatty acid metabolic process	2.87E-02
139	GO:0090351: seedling development	2.90E-02
140	GO:0046854: phosphatidylinositol phosphorylation	2.90E-02
141	GO:0009825: multidimensional cell growth	2.90E-02
142	GO:0080188: RNA-directed DNA methylation	2.90E-02
143	GO:0006863: purine nucleobase transport	3.13E-02
144	GO:0009833: plant-type primary cell wall biogenesis	3.13E-02
145	GO:0042753: positive regulation of circadian rhythm	3.13E-02
146	GO:0019344: cysteine biosynthetic process	3.37E-02
147	GO:0030150: protein import into mitochondrial matrix	3.37E-02
148	GO:0006338: chromatin remodeling	3.37E-02
149	GO:0007010: cytoskeleton organization	3.37E-02
150	GO:0006289: nucleotide-excision repair	3.37E-02
151	GO:0009636: response to toxic substance	3.50E-02
152	GO:0009965: leaf morphogenesis	3.50E-02
153	GO:0006418: tRNA aminoacylation for protein translation	3.61E-02
154	GO:0016998: cell wall macromolecule catabolic process	3.87E-02
155	GO:0006306: DNA methylation	3.87E-02
156	GO:0003333: amino acid transmembrane transport	3.87E-02
157	GO:0008150: biological_process	3.98E-02
158	GO:0016226: iron-sulfur cluster assembly	4.12E-02
159	GO:0035428: hexose transmembrane transport	4.12E-02
160	GO:0009736: cytokinin-activated signaling pathway	4.19E-02
161	GO:0009625: response to insect	4.39E-02
162	GO:0009693: ethylene biosynthetic process	4.39E-02
163	GO:0071215: cellular response to abscisic acid stimulus	4.39E-02
164	GO:0009686: gibberellin biosynthetic process	4.39E-02
165	GO:0010082: regulation of root meristem growth	4.39E-02
166	GO:0010584: pollen exine formation	4.65E-02
167	GO:0006284: base-excision repair	4.65E-02
168	GO:0009658: chloroplast organization	4.86E-02
169	GO:0016117: carotenoid biosynthetic process	4.93E-02
170	GO:0070417: cellular response to cold	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0004401: histidinol-phosphatase activity	0.00E+00
7	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
8	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
9	GO:0008805: carbon-monoxide oxygenase activity	1.58E-05
10	GO:0001872: (1->3)-beta-D-glucan binding	1.10E-04
11	GO:0004830: tryptophan-tRNA ligase activity	6.04E-04
12	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	6.04E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.04E-04
14	GO:0005227: calcium activated cation channel activity	6.04E-04
15	GO:0042834: peptidoglycan binding	6.04E-04
16	GO:0005290: L-histidine transmembrane transporter activity	6.04E-04
17	GO:0042586: peptide deformylase activity	6.04E-04
18	GO:0008395: steroid hydroxylase activity	6.04E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.04E-04
20	GO:0050017: L-3-cyanoalanine synthase activity	1.30E-03
21	GO:0017118: lipoyltransferase activity	1.30E-03
22	GO:0010296: prenylcysteine methylesterase activity	1.30E-03
23	GO:0016415: octanoyltransferase activity	1.30E-03
24	GO:0004047: aminomethyltransferase activity	1.30E-03
25	GO:0052832: inositol monophosphate 3-phosphatase activity	1.30E-03
26	GO:0008934: inositol monophosphate 1-phosphatase activity	1.30E-03
27	GO:0052833: inositol monophosphate 4-phosphatase activity	1.30E-03
28	GO:0000064: L-ornithine transmembrane transporter activity	1.30E-03
29	GO:0004412: homoserine dehydrogenase activity	1.30E-03
30	GO:0050736: O-malonyltransferase activity	1.30E-03
31	GO:0009884: cytokinin receptor activity	1.30E-03
32	GO:0004805: trehalose-phosphatase activity	1.70E-03
33	GO:0005034: osmosensor activity	2.14E-03
34	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.14E-03
35	GO:0045548: phenylalanine ammonia-lyase activity	2.14E-03
36	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.14E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	2.14E-03
38	GO:0080031: methyl salicylate esterase activity	3.10E-03
39	GO:0004300: enoyl-CoA hydratase activity	3.10E-03
40	GO:0015189: L-lysine transmembrane transporter activity	3.10E-03
41	GO:0004072: aspartate kinase activity	3.10E-03
42	GO:0043047: single-stranded telomeric DNA binding	3.10E-03
43	GO:0015181: arginine transmembrane transporter activity	3.10E-03
44	GO:0017172: cysteine dioxygenase activity	3.10E-03
45	GO:0004519: endonuclease activity	3.98E-03
46	GO:0031418: L-ascorbic acid binding	4.02E-03
47	GO:0004845: uracil phosphoribosyltransferase activity	4.19E-03
48	GO:0010011: auxin binding	4.19E-03
49	GO:0010328: auxin influx transmembrane transporter activity	4.19E-03
50	GO:0070628: proteasome binding	4.19E-03
51	GO:0005471: ATP:ADP antiporter activity	5.38E-03
52	GO:0008725: DNA-3-methyladenine glycosylase activity	5.38E-03
53	GO:0003785: actin monomer binding	5.38E-03
54	GO:2001070: starch binding	6.67E-03
55	GO:0030983: mismatched DNA binding	6.67E-03
56	GO:0080030: methyl indole-3-acetate esterase activity	6.67E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	6.67E-03
58	GO:0004709: MAP kinase kinase kinase activity	6.67E-03
59	GO:0031593: polyubiquitin binding	6.67E-03
60	GO:0004784: superoxide dismutase activity	6.67E-03
61	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	6.67E-03
62	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	6.67E-03
63	GO:0043621: protein self-association	6.81E-03
64	GO:0019900: kinase binding	8.07E-03
65	GO:0004124: cysteine synthase activity	8.07E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.07E-03
67	GO:0016832: aldehyde-lyase activity	8.07E-03
68	GO:0004849: uridine kinase activity	8.07E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	8.07E-03
70	GO:0004871: signal transducer activity	8.36E-03
71	GO:0042162: telomeric DNA binding	9.56E-03
72	GO:0019899: enzyme binding	9.56E-03
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.99E-03
74	GO:0005525: GTP binding	1.02E-02
75	GO:0051015: actin filament binding	1.14E-02
76	GO:0003684: damaged DNA binding	1.21E-02
77	GO:0046914: transition metal ion binding	1.28E-02
78	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.46E-02
79	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.71E-02
80	GO:0030247: polysaccharide binding	1.71E-02
81	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.78E-02
82	GO:0004673: protein histidine kinase activity	1.83E-02
83	GO:0019843: rRNA binding	1.89E-02
84	GO:0005096: GTPase activator activity	2.00E-02
85	GO:0008327: methyl-CpG binding	2.03E-02
86	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.03E-02
87	GO:0030170: pyridoxal phosphate binding	2.16E-02
88	GO:0015095: magnesium ion transmembrane transporter activity	2.45E-02
89	GO:0000155: phosphorelay sensor kinase activity	2.45E-02
90	GO:0009982: pseudouridine synthase activity	2.45E-02
91	GO:0015266: protein channel activity	2.45E-02
92	GO:0003723: RNA binding	2.78E-02
93	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.13E-02
94	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.13E-02
95	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.13E-02
96	GO:0051536: iron-sulfur cluster binding	3.37E-02
97	GO:0004857: enzyme inhibitor activity	3.37E-02
98	GO:0043130: ubiquitin binding	3.37E-02
99	GO:0008134: transcription factor binding	3.37E-02
100	GO:0003924: GTPase activity	3.47E-02
101	GO:0051087: chaperone binding	3.61E-02
102	GO:0043424: protein histidine kinase binding	3.61E-02
103	GO:0005345: purine nucleobase transmembrane transporter activity	3.61E-02
104	GO:0003964: RNA-directed DNA polymerase activity	3.87E-02
105	GO:0016760: cellulose synthase (UDP-forming) activity	4.39E-02
106	GO:0030570: pectate lyase activity	4.39E-02
107	GO:0015171: amino acid transmembrane transporter activity	4.63E-02
108	GO:0004812: aminoacyl-tRNA ligase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009507: chloroplast	6.01E-05
5	GO:0010370: perinucleolar chromocenter	6.04E-04
6	GO:0009513: etioplast	1.30E-03
7	GO:0005697: telomerase holoenzyme complex	1.30E-03
8	GO:0009509: chromoplast	2.14E-03
9	GO:0042646: plastid nucleoid	3.10E-03
10	GO:0032432: actin filament bundle	3.10E-03
11	GO:0009707: chloroplast outer membrane	3.28E-03
12	GO:0015629: actin cytoskeleton	5.85E-03
13	GO:0009986: cell surface	9.56E-03
14	GO:0031305: integral component of mitochondrial inner membrane	1.11E-02
15	GO:0009501: amyloplast	1.11E-02
16	GO:0000784: nuclear chromosome, telomeric region	1.28E-02
17	GO:0005720: nuclear heterochromatin	1.46E-02
18	GO:0042644: chloroplast nucleoid	1.46E-02
19	GO:0005884: actin filament	2.03E-02
20	GO:0005578: proteinaceous extracellular matrix	2.45E-02
21	GO:0005938: cell cortex	2.45E-02
22	GO:0016602: CCAAT-binding factor complex	2.45E-02
23	GO:0009574: preprophase band	2.45E-02
24	GO:0030095: chloroplast photosystem II	2.67E-02
25	GO:0000419: DNA-directed RNA polymerase V complex	3.13E-02
26	GO:0005856: cytoskeleton	3.50E-02
27	GO:0009654: photosystem II oxygen evolving complex	3.61E-02
28	GO:0042651: thylakoid membrane	3.61E-02
29	GO:0046658: anchored component of plasma membrane	4.01E-02
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.65E-02