Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01895

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051553: flavone biosynthetic process0.00E+00
2GO:0071985: multivesicular body sorting pathway0.00E+00
3GO:0010055: atrichoblast differentiation0.00E+00
4GO:1902001: fatty acid transmembrane transport0.00E+00
5GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
6GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
7GO:0046865: terpenoid transport0.00E+00
8GO:0010793: regulation of mRNA export from nucleus0.00E+00
9GO:0018063: cytochrome c-heme linkage0.00E+00
10GO:1900057: positive regulation of leaf senescence9.71E-06
11GO:0009617: response to bacterium1.76E-05
12GO:0042742: defense response to bacterium9.61E-05
13GO:0009751: response to salicylic acid1.94E-04
14GO:0009759: indole glucosinolate biosynthetic process1.99E-04
15GO:0009693: ethylene biosynthetic process3.10E-04
16GO:1900056: negative regulation of leaf senescence3.47E-04
17GO:1990542: mitochondrial transmembrane transport3.84E-04
18GO:0032107: regulation of response to nutrient levels3.84E-04
19GO:1990641: response to iron ion starvation3.84E-04
20GO:0033306: phytol metabolic process3.84E-04
21GO:0010482: regulation of epidermal cell division3.84E-04
22GO:0010230: alternative respiration3.84E-04
23GO:0050691: regulation of defense response to virus by host3.84E-04
24GO:0006680: glucosylceramide catabolic process3.84E-04
25GO:1900384: regulation of flavonol biosynthetic process3.84E-04
26GO:0051707: response to other organism4.07E-04
27GO:0010200: response to chitin4.18E-04
28GO:0006102: isocitrate metabolic process4.35E-04
29GO:0043068: positive regulation of programmed cell death4.35E-04
30GO:0006605: protein targeting4.35E-04
31GO:0009636: response to toxic substance4.90E-04
32GO:0006623: protein targeting to vacuole5.67E-04
33GO:0009056: catabolic process6.38E-04
34GO:0009835: fruit ripening6.38E-04
35GO:0015031: protein transport6.96E-04
36GO:0071668: plant-type cell wall assembly8.33E-04
37GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.33E-04
38GO:0055088: lipid homeostasis8.33E-04
39GO:0050684: regulation of mRNA processing8.33E-04
40GO:0019374: galactolipid metabolic process8.33E-04
41GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex8.33E-04
42GO:0000719: photoreactive repair8.33E-04
43GO:0006101: citrate metabolic process8.33E-04
44GO:0015908: fatty acid transport8.33E-04
45GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.33E-04
46GO:0019725: cellular homeostasis8.33E-04
47GO:0051607: defense response to virus9.16E-04
48GO:0009620: response to fungus9.63E-04
49GO:0071398: cellular response to fatty acid1.35E-03
50GO:0072661: protein targeting to plasma membrane1.35E-03
51GO:0010186: positive regulation of cellular defense response1.35E-03
52GO:0006065: UDP-glucuronate biosynthetic process1.35E-03
53GO:0010476: gibberellin mediated signaling pathway1.35E-03
54GO:0010325: raffinose family oligosaccharide biosynthetic process1.35E-03
55GO:0015692: lead ion transport1.35E-03
56GO:0052546: cell wall pectin metabolic process1.35E-03
57GO:0080168: abscisic acid transport1.35E-03
58GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.35E-03
59GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.35E-03
60GO:0032784: regulation of DNA-templated transcription, elongation1.35E-03
61GO:0002230: positive regulation of defense response to virus by host1.35E-03
62GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.35E-03
63GO:0006556: S-adenosylmethionine biosynthetic process1.35E-03
64GO:0080163: regulation of protein serine/threonine phosphatase activity1.35E-03
65GO:0090351: seedling development1.65E-03
66GO:0080024: indolebutyric acid metabolic process1.95E-03
67GO:0055070: copper ion homeostasis1.95E-03
68GO:0001676: long-chain fatty acid metabolic process1.95E-03
69GO:0010116: positive regulation of abscisic acid biosynthetic process1.95E-03
70GO:0006020: inositol metabolic process1.95E-03
71GO:0070301: cellular response to hydrogen peroxide1.95E-03
72GO:0002239: response to oomycetes1.95E-03
73GO:0071323: cellular response to chitin1.95E-03
74GO:1902290: positive regulation of defense response to oomycetes1.95E-03
75GO:0006099: tricarboxylic acid cycle1.96E-03
76GO:0040008: regulation of growth2.37E-03
77GO:0016998: cell wall macromolecule catabolic process2.47E-03
78GO:0060548: negative regulation of cell death2.62E-03
79GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.62E-03
80GO:0048830: adventitious root development2.62E-03
81GO:1901002: positive regulation of response to salt stress2.62E-03
82GO:0033356: UDP-L-arabinose metabolic process2.62E-03
83GO:0051567: histone H3-K9 methylation2.62E-03
84GO:0015867: ATP transport2.62E-03
85GO:0010188: response to microbial phytotoxin2.62E-03
86GO:0071456: cellular response to hypoxia2.70E-03
87GO:0006012: galactose metabolic process2.95E-03
88GO:0006097: glyoxylate cycle3.35E-03
89GO:0046283: anthocyanin-containing compound metabolic process3.35E-03
90GO:0046686: response to cadmium ion3.36E-03
91GO:0015866: ADP transport4.14E-03
92GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.14E-03
93GO:0010256: endomembrane system organization4.14E-03
94GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.14E-03
95GO:0002238: response to molecule of fungal origin4.14E-03
96GO:0009643: photosynthetic acclimation4.14E-03
97GO:0048444: floral organ morphogenesis4.99E-03
98GO:0002229: defense response to oomycetes5.00E-03
99GO:0010193: response to ozone5.00E-03
100GO:1902074: response to salt5.89E-03
101GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.89E-03
102GO:0080186: developmental vegetative growth5.89E-03
103GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.89E-03
104GO:0071669: plant-type cell wall organization or biogenesis5.89E-03
105GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.89E-03
106GO:0050829: defense response to Gram-negative bacterium5.89E-03
107GO:0016559: peroxisome fission6.85E-03
108GO:0006644: phospholipid metabolic process6.85E-03
109GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.85E-03
110GO:0017004: cytochrome complex assembly7.86E-03
111GO:0010208: pollen wall assembly7.86E-03
112GO:0010120: camalexin biosynthetic process7.86E-03
113GO:0006997: nucleus organization7.86E-03
114GO:0010204: defense response signaling pathway, resistance gene-independent7.86E-03
115GO:0009627: systemic acquired resistance8.09E-03
116GO:0006906: vesicle fusion8.09E-03
117GO:0009651: response to salt stress8.35E-03
118GO:0007338: single fertilization8.92E-03
119GO:0051865: protein autoubiquitination8.92E-03
120GO:0019432: triglyceride biosynthetic process8.92E-03
121GO:0010112: regulation of systemic acquired resistance8.92E-03
122GO:0009611: response to wounding9.39E-03
123GO:0008202: steroid metabolic process1.00E-02
124GO:1900426: positive regulation of defense response to bacterium1.00E-02
125GO:0090332: stomatal closure1.00E-02
126GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.00E-02
127GO:0009407: toxin catabolic process1.04E-02
128GO:0006979: response to oxidative stress1.08E-02
129GO:0009688: abscisic acid biosynthetic process1.12E-02
130GO:0009641: shade avoidance1.12E-02
131GO:0016441: posttranscriptional gene silencing1.12E-02
132GO:0009870: defense response signaling pathway, resistance gene-dependent1.12E-02
133GO:0006032: chitin catabolic process1.12E-02
134GO:0010150: leaf senescence1.18E-02
135GO:0048765: root hair cell differentiation1.24E-02
136GO:0009684: indoleacetic acid biosynthetic process1.24E-02
137GO:0019684: photosynthesis, light reaction1.24E-02
138GO:0006629: lipid metabolic process1.24E-02
139GO:0009682: induced systemic resistance1.24E-02
140GO:0052544: defense response by callose deposition in cell wall1.24E-02
141GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.37E-02
142GO:0000266: mitochondrial fission1.37E-02
143GO:0012501: programmed cell death1.37E-02
144GO:0045037: protein import into chloroplast stroma1.37E-02
145GO:0009753: response to jasmonic acid1.38E-02
146GO:0007166: cell surface receptor signaling pathway1.40E-02
147GO:0006887: exocytosis1.43E-02
148GO:0006631: fatty acid metabolic process1.43E-02
149GO:2000028: regulation of photoperiodism, flowering1.49E-02
150GO:0030048: actin filament-based movement1.49E-02
151GO:0010102: lateral root morphogenesis1.49E-02
152GO:0050832: defense response to fungus1.51E-02
153GO:0007275: multicellular organism development1.53E-02
154GO:0002237: response to molecule of bacterial origin1.63E-02
155GO:0007033: vacuole organization1.77E-02
156GO:0009225: nucleotide-sugar metabolic process1.77E-02
157GO:0031347: regulation of defense response1.88E-02
158GO:0000162: tryptophan biosynthetic process1.91E-02
159GO:0080147: root hair cell development2.05E-02
160GO:0051302: regulation of cell division2.20E-02
161GO:0006874: cellular calcium ion homeostasis2.20E-02
162GO:0010026: trichome differentiation2.20E-02
163GO:0006970: response to osmotic stress2.26E-02
164GO:0009269: response to desiccation2.36E-02
165GO:0007005: mitochondrion organization2.51E-02
166GO:0016226: iron-sulfur cluster assembly2.51E-02
167GO:0006730: one-carbon metabolic process2.51E-02
168GO:0009411: response to UV2.67E-02
169GO:0016192: vesicle-mediated transport2.87E-02
170GO:0042147: retrograde transport, endosome to Golgi3.01E-02
171GO:0010118: stomatal movement3.18E-02
172GO:0010182: sugar mediated signaling pathway3.35E-02
173GO:0048868: pollen tube development3.35E-02
174GO:0006520: cellular amino acid metabolic process3.35E-02
175GO:0006662: glycerol ether metabolic process3.35E-02
176GO:0006886: intracellular protein transport3.51E-02
177GO:0006508: proteolysis3.80E-02
178GO:0006635: fatty acid beta-oxidation3.89E-02
179GO:0071554: cell wall organization or biogenesis3.89E-02
180GO:0000302: response to reactive oxygen species3.89E-02
181GO:0006891: intra-Golgi vesicle-mediated transport3.89E-02
182GO:0071281: cellular response to iron ion4.27E-02
183GO:0009567: double fertilization forming a zygote and endosperm4.46E-02
184GO:0008152: metabolic process4.91E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
3GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
4GO:0004806: triglyceride lipase activity1.51E-04
5GO:0102391: decanoate--CoA ligase activity2.69E-04
6GO:0004467: long-chain fatty acid-CoA ligase activity3.47E-04
7GO:0015245: fatty acid transporter activity3.84E-04
8GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.84E-04
9GO:0016229: steroid dehydrogenase activity3.84E-04
10GO:0010179: IAA-Ala conjugate hydrolase activity3.84E-04
11GO:2001227: quercitrin binding3.84E-04
12GO:0070401: NADP+ binding3.84E-04
13GO:0032266: phosphatidylinositol-3-phosphate binding3.84E-04
14GO:0004348: glucosylceramidase activity3.84E-04
15GO:0047940: glucuronokinase activity3.84E-04
16GO:0030942: endoplasmic reticulum signal peptide binding3.84E-04
17GO:2001147: camalexin binding3.84E-04
18GO:0009000: selenocysteine lyase activity3.84E-04
19GO:0010331: gibberellin binding8.33E-04
20GO:0003994: aconitate hydratase activity8.33E-04
21GO:0032934: sterol binding8.33E-04
22GO:0052691: UDP-arabinopyranose mutase activity8.33E-04
23GO:0050736: O-malonyltransferase activity8.33E-04
24GO:0030247: polysaccharide binding1.20E-03
25GO:0003979: UDP-glucose 6-dehydrogenase activity1.35E-03
26GO:0004478: methionine adenosyltransferase activity1.35E-03
27GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.35E-03
28GO:0004324: ferredoxin-NADP+ reductase activity1.35E-03
29GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.35E-03
30GO:0043169: cation binding1.35E-03
31GO:0032403: protein complex binding1.35E-03
32GO:0017077: oxidative phosphorylation uncoupler activity1.95E-03
33GO:0035529: NADH pyrophosphatase activity1.95E-03
34GO:0004449: isocitrate dehydrogenase (NAD+) activity1.95E-03
35GO:0010178: IAA-amino acid conjugate hydrolase activity1.95E-03
36GO:0016656: monodehydroascorbate reductase (NADH) activity1.95E-03
37GO:0008106: alcohol dehydrogenase (NADP+) activity1.95E-03
38GO:0001046: core promoter sequence-specific DNA binding2.04E-03
39GO:0050378: UDP-glucuronate 4-epimerase activity2.62E-03
40GO:0016866: intramolecular transferase activity2.62E-03
41GO:0009916: alternative oxidase activity2.62E-03
42GO:0016787: hydrolase activity2.68E-03
43GO:0004499: N,N-dimethylaniline monooxygenase activity3.20E-03
44GO:0047631: ADP-ribose diphosphatase activity3.35E-03
45GO:0030151: molybdenum ion binding3.35E-03
46GO:0016773: phosphotransferase activity, alcohol group as acceptor3.35E-03
47GO:0018685: alkane 1-monooxygenase activity3.35E-03
48GO:0005496: steroid binding3.35E-03
49GO:0000210: NAD+ diphosphatase activity4.14E-03
50GO:0015217: ADP transmembrane transporter activity4.99E-03
51GO:0004144: diacylglycerol O-acyltransferase activity4.99E-03
52GO:0005347: ATP transmembrane transporter activity4.99E-03
53GO:0003978: UDP-glucose 4-epimerase activity4.99E-03
54GO:0004656: procollagen-proline 4-dioxygenase activity4.99E-03
55GO:0004620: phospholipase activity5.89E-03
56GO:0008320: protein transmembrane transporter activity5.89E-03
57GO:0043295: glutathione binding5.89E-03
58GO:0008237: metallopeptidase activity6.44E-03
59GO:0004714: transmembrane receptor protein tyrosine kinase activity6.85E-03
60GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity6.85E-03
61GO:0008312: 7S RNA binding6.85E-03
62GO:0004034: aldose 1-epimerase activity6.85E-03
63GO:0052747: sinapyl alcohol dehydrogenase activity6.85E-03
64GO:0005544: calcium-dependent phospholipid binding6.85E-03
65GO:0004033: aldo-keto reductase (NADP) activity6.85E-03
66GO:0008142: oxysterol binding7.86E-03
67GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity8.92E-03
68GO:0030170: pyridoxal phosphate binding8.95E-03
69GO:0005509: calcium ion binding9.10E-03
70GO:0047617: acyl-CoA hydrolase activity1.00E-02
71GO:0004568: chitinase activity1.12E-02
72GO:0004864: protein phosphatase inhibitor activity1.12E-02
73GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.20E-02
74GO:0046872: metal ion binding1.24E-02
75GO:0000149: SNARE binding1.31E-02
76GO:0045551: cinnamyl-alcohol dehydrogenase activity1.37E-02
77GO:0050661: NADP binding1.37E-02
78GO:0051539: 4 iron, 4 sulfur cluster binding1.37E-02
79GO:0004364: glutathione transferase activity1.49E-02
80GO:0005484: SNAP receptor activity1.55E-02
81GO:0003774: motor activity1.63E-02
82GO:0008266: poly(U) RNA binding1.63E-02
83GO:0005198: structural molecule activity1.75E-02
84GO:0008061: chitin binding1.77E-02
85GO:0003712: transcription cofactor activity1.77E-02
86GO:0004970: ionotropic glutamate receptor activity1.77E-02
87GO:0005217: intracellular ligand-gated ion channel activity1.77E-02
88GO:0051287: NAD binding1.88E-02
89GO:0051536: iron-sulfur cluster binding2.05E-02
90GO:0031418: L-ascorbic acid binding2.05E-02
91GO:0043130: ubiquitin binding2.05E-02
92GO:0016887: ATPase activity2.39E-02
93GO:0050660: flavin adenine dinucleotide binding2.47E-02
94GO:0016760: cellulose synthase (UDP-forming) activity2.67E-02
95GO:0008810: cellulase activity2.67E-02
96GO:0047134: protein-disulfide reductase activity3.01E-02
97GO:0005102: receptor binding3.01E-02
98GO:0015035: protein disulfide oxidoreductase activity3.08E-02
99GO:0016746: transferase activity, transferring acyl groups3.08E-02
100GO:0004791: thioredoxin-disulfide reductase activity3.53E-02
101GO:0016853: isomerase activity3.53E-02
102GO:0050662: coenzyme binding3.53E-02
103GO:0042803: protein homodimerization activity3.57E-02
104GO:0004871: signal transducer activity3.57E-02
105GO:0004197: cysteine-type endopeptidase activity4.08E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.27E-02
107GO:0008483: transaminase activity4.66E-02
108GO:0016413: O-acetyltransferase activity4.85E-02
109GO:0005507: copper ion binding4.86E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane9.68E-07
2GO:0005794: Golgi apparatus1.59E-06
3GO:0045252: oxoglutarate dehydrogenase complex3.84E-04
4GO:0000138: Golgi trans cisterna3.84E-04
5GO:0005886: plasma membrane5.64E-04
6GO:0005802: trans-Golgi network6.66E-04
7GO:0000814: ESCRT II complex8.33E-04
8GO:0017119: Golgi transport complex8.76E-04
9GO:0005768: endosome9.07E-04
10GO:0005789: endoplasmic reticulum membrane1.12E-03
11GO:0042406: extrinsic component of endoplasmic reticulum membrane1.35E-03
12GO:0030658: transport vesicle membrane1.95E-03
13GO:0005783: endoplasmic reticulum2.21E-03
14GO:0005743: mitochondrial inner membrane2.91E-03
15GO:0000813: ESCRT I complex3.35E-03
16GO:0000164: protein phosphatase type 1 complex3.35E-03
17GO:0009504: cell plate4.67E-03
18GO:0031965: nuclear membrane4.67E-03
19GO:0005829: cytosol5.25E-03
20GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane5.89E-03
21GO:0032580: Golgi cisterna membrane6.06E-03
22GO:0005788: endoplasmic reticulum lumen7.65E-03
23GO:0005779: integral component of peroxisomal membrane7.86E-03
24GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.86E-03
25GO:0031901: early endosome membrane8.92E-03
26GO:0030665: clathrin-coated vesicle membrane1.00E-02
27GO:0008540: proteasome regulatory particle, base subcomplex1.00E-02
28GO:0005618: cell wall1.26E-02
29GO:0031201: SNARE complex1.43E-02
30GO:0031902: late endosome membrane1.43E-02
31GO:0031012: extracellular matrix1.49E-02
32GO:0046658: anchored component of plasma membrane1.69E-02
33GO:0005795: Golgi stack1.77E-02
34GO:0005769: early endosome1.91E-02
35GO:0031225: anchored component of membrane1.95E-02
36GO:0070469: respiratory chain2.20E-02
37GO:0005741: mitochondrial outer membrane2.36E-02
38GO:0005770: late endosome3.35E-02
39GO:0019898: extrinsic component of membrane3.71E-02
40GO:0009543: chloroplast thylakoid lumen3.74E-02
41GO:0071944: cell periphery4.27E-02
42GO:0005778: peroxisomal membrane4.66E-02
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Gene type



Gene DE type