Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010081: regulation of inflorescence meristem growth0.00E+00
2GO:0000819: sister chromatid segregation0.00E+00
3GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0080127: fruit septum development0.00E+00
7GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0045184: establishment of protein localization0.00E+00
10GO:0044774: mitotic DNA integrity checkpoint0.00E+00
11GO:0046486: glycerolipid metabolic process0.00E+00
12GO:0006907: pinocytosis0.00E+00
13GO:0070125: mitochondrial translational elongation0.00E+00
14GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.21E-05
15GO:0051513: regulation of monopolar cell growth1.34E-04
16GO:0048497: maintenance of floral organ identity3.42E-04
17GO:0009658: chloroplast organization3.78E-04
18GO:0034757: negative regulation of iron ion transport6.78E-04
19GO:0042659: regulation of cell fate specification6.78E-04
20GO:0010726: positive regulation of hydrogen peroxide metabolic process6.78E-04
21GO:0070509: calcium ion import6.78E-04
22GO:0006438: valyl-tRNA aminoacylation6.78E-04
23GO:0090558: plant epidermis development6.78E-04
24GO:0010080: regulation of floral meristem growth6.78E-04
25GO:0043087: regulation of GTPase activity6.78E-04
26GO:0035987: endodermal cell differentiation6.78E-04
27GO:0015904: tetracycline transport6.78E-04
28GO:0000160: phosphorelay signal transduction system7.75E-04
29GO:0006468: protein phosphorylation8.59E-04
30GO:0046620: regulation of organ growth1.00E-03
31GO:0000105: histidine biosynthetic process1.00E-03
32GO:0009958: positive gravitropism1.39E-03
33GO:2000123: positive regulation of stomatal complex development1.46E-03
34GO:0043039: tRNA aminoacylation1.46E-03
35GO:1901529: positive regulation of anion channel activity1.46E-03
36GO:0010271: regulation of chlorophyll catabolic process1.46E-03
37GO:0006432: phenylalanyl-tRNA aminoacylation1.46E-03
38GO:0018026: peptidyl-lysine monomethylation1.46E-03
39GO:0006650: glycerophospholipid metabolic process1.46E-03
40GO:0000373: Group II intron splicing1.46E-03
41GO:0001736: establishment of planar polarity1.46E-03
42GO:0080009: mRNA methylation1.46E-03
43GO:0009786: regulation of asymmetric cell division1.46E-03
44GO:0031648: protein destabilization1.46E-03
45GO:0007018: microtubule-based movement1.52E-03
46GO:0009926: auxin polar transport1.52E-03
47GO:0006782: protoporphyrinogen IX biosynthetic process2.03E-03
48GO:0048829: root cap development2.03E-03
49GO:0045910: negative regulation of DNA recombination2.41E-03
50GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.41E-03
51GO:0031022: nuclear migration along microfilament2.41E-03
52GO:0090708: specification of plant organ axis polarity2.41E-03
53GO:0080117: secondary growth2.41E-03
54GO:0046168: glycerol-3-phosphate catabolic process2.41E-03
55GO:0009736: cytokinin-activated signaling pathway2.41E-03
56GO:0010022: meristem determinacy2.41E-03
57GO:0010582: floral meristem determinacy2.69E-03
58GO:0007231: osmosensory signaling pathway3.51E-03
59GO:0051639: actin filament network formation3.51E-03
60GO:0034059: response to anoxia3.51E-03
61GO:0010239: chloroplast mRNA processing3.51E-03
62GO:0044211: CTP salvage3.51E-03
63GO:0007276: gamete generation3.51E-03
64GO:0006072: glycerol-3-phosphate metabolic process3.51E-03
65GO:0006424: glutamyl-tRNA aminoacylation3.51E-03
66GO:2000904: regulation of starch metabolic process3.51E-03
67GO:1990019: protein storage vacuole organization3.51E-03
68GO:0045017: glycerolipid biosynthetic process3.51E-03
69GO:0010371: regulation of gibberellin biosynthetic process3.51E-03
70GO:0070588: calcium ion transmembrane transport3.88E-03
71GO:0010311: lateral root formation4.40E-03
72GO:0051764: actin crosslink formation4.74E-03
73GO:0030104: water homeostasis4.74E-03
74GO:0033500: carbohydrate homeostasis4.74E-03
75GO:2000038: regulation of stomatal complex development4.74E-03
76GO:0006021: inositol biosynthetic process4.74E-03
77GO:0008295: spermidine biosynthetic process4.74E-03
78GO:0044206: UMP salvage4.74E-03
79GO:0009956: radial pattern formation4.74E-03
80GO:0009755: hormone-mediated signaling pathway4.74E-03
81GO:0048629: trichome patterning4.74E-03
82GO:0051017: actin filament bundle assembly4.81E-03
83GO:0009793: embryo development ending in seed dormancy5.85E-03
84GO:0016123: xanthophyll biosynthetic process6.09E-03
85GO:0010438: cellular response to sulfur starvation6.09E-03
86GO:0080110: sporopollenin biosynthetic process6.09E-03
87GO:0010375: stomatal complex patterning6.09E-03
88GO:0009696: salicylic acid metabolic process6.09E-03
89GO:0009904: chloroplast accumulation movement6.09E-03
90GO:0030001: metal ion transport6.61E-03
91GO:0071215: cellular response to abscisic acid stimulus7.01E-03
92GO:0009913: epidermal cell differentiation7.56E-03
93GO:0010358: leaf shaping7.56E-03
94GO:1902456: regulation of stomatal opening7.56E-03
95GO:0016554: cytidine to uridine editing7.56E-03
96GO:0042793: transcription from plastid promoter7.56E-03
97GO:0048831: regulation of shoot system development7.56E-03
98GO:0003006: developmental process involved in reproduction7.56E-03
99GO:0009920: cell plate formation involved in plant-type cell wall biogenesis7.56E-03
100GO:0006206: pyrimidine nucleobase metabolic process7.56E-03
101GO:0010942: positive regulation of cell death7.56E-03
102GO:0042127: regulation of cell proliferation7.62E-03
103GO:0040008: regulation of growth8.91E-03
104GO:0010087: phloem or xylem histogenesis8.95E-03
105GO:0009648: photoperiodism9.15E-03
106GO:2000067: regulation of root morphogenesis9.15E-03
107GO:0048509: regulation of meristem development9.15E-03
108GO:0009903: chloroplast avoidance movement9.15E-03
109GO:0030488: tRNA methylation9.15E-03
110GO:0031930: mitochondria-nucleus signaling pathway9.15E-03
111GO:0009734: auxin-activated signaling pathway9.41E-03
112GO:0010305: leaf vascular tissue pattern formation9.67E-03
113GO:0009741: response to brassinosteroid9.67E-03
114GO:0045892: negative regulation of transcription, DNA-templated1.08E-02
115GO:0006955: immune response1.09E-02
116GO:0048528: post-embryonic root development1.09E-02
117GO:1900056: negative regulation of leaf senescence1.09E-02
118GO:0010098: suspensor development1.09E-02
119GO:0010444: guard mother cell differentiation1.09E-02
120GO:0000082: G1/S transition of mitotic cell cycle1.09E-02
121GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.09E-02
122GO:0000712: resolution of meiotic recombination intermediates1.09E-02
123GO:0071554: cell wall organization or biogenesis1.20E-02
124GO:0009733: response to auxin1.21E-02
125GO:0010439: regulation of glucosinolate biosynthetic process1.27E-02
126GO:0001522: pseudouridine synthesis1.27E-02
127GO:0009819: drought recovery1.27E-02
128GO:0009690: cytokinin metabolic process1.27E-02
129GO:2000070: regulation of response to water deprivation1.27E-02
130GO:0010492: maintenance of shoot apical meristem identity1.27E-02
131GO:0055075: potassium ion homeostasis1.27E-02
132GO:0010583: response to cyclopentenone1.28E-02
133GO:0032502: developmental process1.28E-02
134GO:0016042: lipid catabolic process1.44E-02
135GO:0071482: cellular response to light stimulus1.46E-02
136GO:0007186: G-protein coupled receptor signaling pathway1.46E-02
137GO:0032544: plastid translation1.46E-02
138GO:0048316: seed development1.47E-02
139GO:0000910: cytokinesis1.64E-02
140GO:0051865: protein autoubiquitination1.66E-02
141GO:0046916: cellular transition metal ion homeostasis1.66E-02
142GO:0048507: meristem development1.66E-02
143GO:0009056: catabolic process1.66E-02
144GO:0006779: porphyrin-containing compound biosynthetic process1.86E-02
145GO:2000280: regulation of root development1.86E-02
146GO:0009098: leucine biosynthetic process1.86E-02
147GO:1900865: chloroplast RNA modification1.86E-02
148GO:0009627: systemic acquired resistance1.95E-02
149GO:0015995: chlorophyll biosynthetic process2.05E-02
150GO:0006949: syncytium formation2.08E-02
151GO:0006259: DNA metabolic process2.08E-02
152GO:0031627: telomeric loop formation2.08E-02
153GO:0006535: cysteine biosynthetic process from serine2.08E-02
154GO:0009641: shade avoidance2.08E-02
155GO:0006298: mismatch repair2.08E-02
156GO:0006816: calcium ion transport2.31E-02
157GO:0006265: DNA topological change2.31E-02
158GO:0009682: induced systemic resistance2.31E-02
159GO:0009750: response to fructose2.31E-02
160GO:0048765: root hair cell differentiation2.31E-02
161GO:0071555: cell wall organization2.31E-02
162GO:0006351: transcription, DNA-templated2.37E-02
163GO:0009058: biosynthetic process2.53E-02
164GO:0006790: sulfur compound metabolic process2.54E-02
165GO:0006312: mitotic recombination2.54E-02
166GO:0010105: negative regulation of ethylene-activated signaling pathway2.54E-02
167GO:0045037: protein import into chloroplast stroma2.54E-02
168GO:0000266: mitochondrial fission2.54E-02
169GO:0006865: amino acid transport2.76E-02
170GO:0010588: cotyledon vascular tissue pattern formation2.79E-02
171GO:0030048: actin filament-based movement2.79E-02
172GO:0010102: lateral root morphogenesis2.79E-02
173GO:0009691: cytokinin biosynthetic process2.79E-02
174GO:0009790: embryo development2.88E-02
175GO:0009867: jasmonic acid mediated signaling pathway2.89E-02
176GO:0006302: double-strand break repair3.04E-02
177GO:0048467: gynoecium development3.04E-02
178GO:0010020: chloroplast fission3.04E-02
179GO:0009933: meristem structural organization3.04E-02
180GO:0009887: animal organ morphogenesis3.04E-02
181GO:0010540: basipetal auxin transport3.04E-02
182GO:0009825: multidimensional cell growth3.29E-02
183GO:0046854: phosphatidylinositol phosphorylation3.29E-02
184GO:0000162: tryptophan biosynthetic process3.56E-02
185GO:0006833: water transport3.56E-02
186GO:0009451: RNA modification3.65E-02
187GO:0009744: response to sucrose3.72E-02
188GO:0019344: cysteine biosynthetic process3.83E-02
189GO:0042546: cell wall biogenesis3.87E-02
190GO:0009416: response to light stimulus3.98E-02
191GO:0051302: regulation of cell division4.11E-02
192GO:0019953: sexual reproduction4.11E-02
193GO:0006418: tRNA aminoacylation for protein translation4.11E-02
194GO:0006874: cellular calcium ion homeostasis4.11E-02
195GO:0009636: response to toxic substance4.18E-02
196GO:0009965: leaf morphogenesis4.18E-02
197GO:0007166: cell surface receptor signaling pathway4.18E-02
198GO:0010431: seed maturation4.40E-02
199GO:0051321: meiotic cell cycle4.40E-02
200GO:0003333: amino acid transmembrane transport4.40E-02
201GO:0016998: cell wall macromolecule catabolic process4.40E-02
202GO:0016226: iron-sulfur cluster assembly4.69E-02
203GO:2000022: regulation of jasmonic acid mediated signaling pathway4.69E-02
204GO:0007005: mitochondrion organization4.69E-02
205GO:0010082: regulation of root meristem growth4.98E-02
206GO:0009294: DNA mediated transformation4.98E-02
207GO:0009625: response to insect4.98E-02
RankGO TermAdjusted P value
1GO:0052834: inositol monophosphate phosphatase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0047661: amino-acid racemase activity0.00E+00
5GO:0004401: histidinol-phosphatase activity0.00E+00
6GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
7GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
8GO:0008805: carbon-monoxide oxygenase activity1.97E-05
9GO:0001872: (1->3)-beta-D-glucan binding1.34E-04
10GO:0004674: protein serine/threonine kinase activity6.08E-04
11GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.78E-04
12GO:0047259: glucomannan 4-beta-mannosyltransferase activity6.78E-04
13GO:0005227: calcium activated cation channel activity6.78E-04
14GO:0042834: peptidoglycan binding6.78E-04
15GO:0004818: glutamate-tRNA ligase activity6.78E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.78E-04
17GO:0004832: valine-tRNA ligase activity6.78E-04
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.78E-04
19GO:0052381: tRNA dimethylallyltransferase activity6.78E-04
20GO:0010347: L-galactose-1-phosphate phosphatase activity6.78E-04
21GO:0010012: steroid 22-alpha hydroxylase activity6.78E-04
22GO:0004047: aminomethyltransferase activity1.46E-03
23GO:0004766: spermidine synthase activity1.46E-03
24GO:0052832: inositol monophosphate 3-phosphatase activity1.46E-03
25GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.46E-03
26GO:0004109: coproporphyrinogen oxidase activity1.46E-03
27GO:0008934: inositol monophosphate 1-phosphatase activity1.46E-03
28GO:0008493: tetracycline transporter activity1.46E-03
29GO:0052833: inositol monophosphate 4-phosphatase activity1.46E-03
30GO:0004826: phenylalanine-tRNA ligase activity1.46E-03
31GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.46E-03
32GO:0050736: O-malonyltransferase activity1.46E-03
33GO:0009884: cytokinin receptor activity1.46E-03
34GO:0050017: L-3-cyanoalanine synthase activity1.46E-03
35GO:0003852: 2-isopropylmalate synthase activity1.46E-03
36GO:0010296: prenylcysteine methylesterase activity1.46E-03
37GO:0000156: phosphorelay response regulator activity2.15E-03
38GO:0051015: actin filament binding2.15E-03
39GO:0003913: DNA photolyase activity2.41E-03
40GO:0005034: osmosensor activity2.41E-03
41GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.41E-03
42GO:0000049: tRNA binding2.69E-03
43GO:0003777: microtubule motor activity2.82E-03
44GO:0005262: calcium channel activity3.06E-03
45GO:0003916: DNA topoisomerase activity3.51E-03
46GO:0080031: methyl salicylate esterase activity3.51E-03
47GO:0003779: actin binding3.95E-03
48GO:0005096: GTPase activator activity4.40E-03
49GO:0004845: uracil phosphoribosyltransferase activity4.74E-03
50GO:0010011: auxin binding4.74E-03
51GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed4.74E-03
52GO:0010328: auxin influx transmembrane transporter activity4.74E-03
53GO:0019199: transmembrane receptor protein kinase activity4.74E-03
54GO:0004930: G-protein coupled receptor activity4.74E-03
55GO:0016279: protein-lysine N-methyltransferase activity4.74E-03
56GO:0004519: endonuclease activity5.67E-03
57GO:0005524: ATP binding5.80E-03
58GO:0004176: ATP-dependent peptidase activity5.85E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity6.09E-03
60GO:0005471: ATP:ADP antiporter activity6.09E-03
61GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.09E-03
62GO:0030983: mismatched DNA binding7.56E-03
63GO:0080030: methyl indole-3-acetate esterase activity7.56E-03
64GO:0004709: MAP kinase kinase kinase activity7.56E-03
65GO:0043621: protein self-association8.57E-03
66GO:0004124: cysteine synthase activity9.15E-03
67GO:0051753: mannan synthase activity9.15E-03
68GO:0004849: uridine kinase activity9.15E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.15E-03
70GO:0016832: aldehyde-lyase activity9.15E-03
71GO:0004656: procollagen-proline 4-dioxygenase activity9.15E-03
72GO:0019900: kinase binding9.15E-03
73GO:0052689: carboxylic ester hydrolase activity9.17E-03
74GO:0004672: protein kinase activity9.49E-03
75GO:0008017: microtubule binding1.03E-02
76GO:0009881: photoreceptor activity1.09E-02
77GO:0016301: kinase activity1.10E-02
78GO:0016887: ATPase activity1.13E-02
79GO:0016298: lipase activity1.19E-02
80GO:0003723: RNA binding1.37E-02
81GO:0046914: transition metal ion binding1.46E-02
82GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.46E-02
83GO:0005525: GTP binding1.50E-02
84GO:0008237: metallopeptidase activity1.55E-02
85GO:0004650: polygalacturonase activity1.59E-02
86GO:0016413: O-acetyltransferase activity1.64E-02
87GO:0016788: hydrolase activity, acting on ester bonds1.91E-02
88GO:0030247: polysaccharide binding2.05E-02
89GO:0004673: protein histidine kinase activity2.08E-02
90GO:0003691: double-stranded telomeric DNA binding2.31E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.49E-02
92GO:0009982: pseudouridine synthase activity2.79E-02
93GO:0000155: phosphorelay sensor kinase activity2.79E-02
94GO:0003697: single-stranded DNA binding2.89E-02
95GO:0005515: protein binding2.93E-02
96GO:0003774: motor activity3.04E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.04E-02
98GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.25E-02
99GO:0003712: transcription cofactor activity3.29E-02
100GO:0004970: ionotropic glutamate receptor activity3.29E-02
101GO:0005217: intracellular ligand-gated ion channel activity3.29E-02
102GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.56E-02
103GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.56E-02
104GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.56E-02
105GO:0042803: protein homodimerization activity3.56E-02
106GO:0004722: protein serine/threonine phosphatase activity3.80E-02
107GO:0005528: FK506 binding3.83E-02
108GO:0051536: iron-sulfur cluster binding3.83E-02
109GO:0031418: L-ascorbic acid binding3.83E-02
110GO:0035091: phosphatidylinositol binding4.02E-02
111GO:0043424: protein histidine kinase binding4.11E-02
112GO:0008094: DNA-dependent ATPase activity4.40E-02
113GO:0004707: MAP kinase activity4.40E-02
114GO:0008408: 3'-5' exonuclease activity4.40E-02
115GO:0003924: GTPase activity4.50E-02
116GO:0009055: electron carrier activity4.97E-02
117GO:0030570: pectate lyase activity4.98E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0000791: euchromatin6.78E-04
4GO:0009986: cell surface8.07E-04
5GO:0005886: plasma membrane9.63E-04
6GO:0005871: kinesin complex1.14E-03
7GO:0000427: plastid-encoded plastid RNA polymerase complex1.46E-03
8GO:0009513: etioplast1.46E-03
9GO:0031357: integral component of chloroplast inner membrane1.46E-03
10GO:0030870: Mre11 complex1.46E-03
11GO:0009507: chloroplast1.70E-03
12GO:0005884: actin filament2.35E-03
13GO:0009509: chromoplast2.41E-03
14GO:0030139: endocytic vesicle2.41E-03
15GO:0032585: multivesicular body membrane3.51E-03
16GO:0032432: actin filament bundle3.51E-03
17GO:0009331: glycerol-3-phosphate dehydrogenase complex3.51E-03
18GO:0046658: anchored component of plasma membrane4.01E-03
19GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)4.74E-03
20GO:0000795: synaptonemal complex6.09E-03
21GO:0015629: actin cytoskeleton7.01E-03
22GO:0000793: condensed chromosome7.56E-03
23GO:0009941: chloroplast envelope1.04E-02
24GO:0000794: condensed nuclear chromosome1.09E-02
25GO:0048226: Casparian strip1.27E-02
26GO:0009501: amyloplast1.27E-02
27GO:0031225: anchored component of membrane1.34E-02
28GO:0000783: nuclear telomere cap complex1.46E-02
29GO:0000418: DNA-directed RNA polymerase IV complex2.08E-02
30GO:0016459: myosin complex2.08E-02
31GO:0005874: microtubule2.43E-02
32GO:0009508: plastid chromosome2.79E-02
33GO:0009574: preprophase band2.79E-02
34GO:0005578: proteinaceous extracellular matrix2.79E-02
35GO:0030095: chloroplast photosystem II3.04E-02
36GO:0005875: microtubule associated complex3.56E-02
37GO:0009654: photosystem II oxygen evolving complex4.11E-02
38GO:0005856: cytoskeleton4.18E-02
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Gene type



Gene DE type