Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
2GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
3GO:0010793: regulation of mRNA export from nucleus0.00E+00
4GO:0090400: stress-induced premature senescence0.00E+00
5GO:0051553: flavone biosynthetic process0.00E+00
6GO:0018063: cytochrome c-heme linkage0.00E+00
7GO:1904250: positive regulation of age-related resistance0.00E+00
8GO:0072722: response to amitrole0.00E+00
9GO:0071985: multivesicular body sorting pathway0.00E+00
10GO:0010055: atrichoblast differentiation0.00E+00
11GO:1902001: fatty acid transmembrane transport0.00E+00
12GO:1900057: positive regulation of leaf senescence1.06E-05
13GO:0009617: response to bacterium2.05E-05
14GO:0009636: response to toxic substance6.72E-05
15GO:0051607: defense response to virus1.11E-04
16GO:0009407: toxin catabolic process2.32E-04
17GO:0009693: ethylene biosynthetic process3.31E-04
18GO:0006012: galactose metabolic process3.31E-04
19GO:1902074: response to salt3.65E-04
20GO:1990641: response to iron ion starvation3.97E-04
21GO:0010482: regulation of epidermal cell division3.97E-04
22GO:0015854: guanine transport3.97E-04
23GO:0006680: glucosylceramide catabolic process3.97E-04
24GO:1900384: regulation of flavonol biosynthetic process3.97E-04
25GO:0010230: alternative respiration3.97E-04
26GO:0042964: thioredoxin reduction3.97E-04
27GO:0032107: regulation of response to nutrient levels3.97E-04
28GO:0015853: adenine transport3.97E-04
29GO:0042542: response to hydrogen peroxide4.14E-04
30GO:0051707: response to other organism4.41E-04
31GO:0043068: positive regulation of programmed cell death4.58E-04
32GO:0006102: isocitrate metabolic process4.58E-04
33GO:0010150: leaf senescence5.79E-04
34GO:0006623: protein targeting to vacuole6.04E-04
35GO:0009651: response to salt stress6.07E-04
36GO:0010112: regulation of systemic acquired resistance6.69E-04
37GO:0009056: catabolic process6.69E-04
38GO:0009835: fruit ripening6.69E-04
39GO:0015031: protein transport7.97E-04
40GO:0055088: lipid homeostasis8.60E-04
41GO:0050684: regulation of mRNA processing8.60E-04
42GO:0000719: photoreactive repair8.60E-04
43GO:0006101: citrate metabolic process8.60E-04
44GO:0019374: galactolipid metabolic process8.60E-04
45GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex8.60E-04
46GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.60E-04
47GO:0015908: fatty acid transport8.60E-04
48GO:0019725: cellular homeostasis8.60E-04
49GO:0071497: cellular response to freezing8.60E-04
50GO:0051252: regulation of RNA metabolic process8.60E-04
51GO:0071668: plant-type cell wall assembly8.60E-04
52GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.60E-04
53GO:0009620: response to fungus1.04E-03
54GO:0009627: systemic acquired resistance1.20E-03
55GO:0042742: defense response to bacterium1.32E-03
56GO:0046686: response to cadmium ion1.34E-03
57GO:0052546: cell wall pectin metabolic process1.40E-03
58GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity1.40E-03
59GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.40E-03
60GO:0032784: regulation of DNA-templated transcription, elongation1.40E-03
61GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.40E-03
62GO:0061158: 3'-UTR-mediated mRNA destabilization1.40E-03
63GO:0002230: positive regulation of defense response to virus by host1.40E-03
64GO:0006556: S-adenosylmethionine biosynthetic process1.40E-03
65GO:0071398: cellular response to fatty acid1.40E-03
66GO:0072661: protein targeting to plasma membrane1.40E-03
67GO:0010186: positive regulation of cellular defense response1.40E-03
68GO:0006065: UDP-glucuronate biosynthetic process1.40E-03
69GO:0010366: negative regulation of ethylene biosynthetic process1.40E-03
70GO:0010476: gibberellin mediated signaling pathway1.40E-03
71GO:0010325: raffinose family oligosaccharide biosynthetic process1.40E-03
72GO:0010272: response to silver ion1.40E-03
73GO:0010311: lateral root formation1.56E-03
74GO:0090351: seedling development1.73E-03
75GO:0009225: nucleotide-sugar metabolic process1.73E-03
76GO:0048527: lateral root development1.76E-03
77GO:0000162: tryptophan biosynthetic process1.93E-03
78GO:0002239: response to oomycetes2.02E-03
79GO:1902290: positive regulation of defense response to oomycetes2.02E-03
80GO:0080024: indolebutyric acid metabolic process2.02E-03
81GO:0001676: long-chain fatty acid metabolic process2.02E-03
82GO:0010116: positive regulation of abscisic acid biosynthetic process2.02E-03
83GO:0070301: cellular response to hydrogen peroxide2.02E-03
84GO:0006099: tricarboxylic acid cycle2.09E-03
85GO:0055114: oxidation-reduction process2.17E-03
86GO:0006874: cellular calcium ion homeostasis2.36E-03
87GO:0040008: regulation of growth2.56E-03
88GO:0016998: cell wall macromolecule catabolic process2.60E-03
89GO:1901002: positive regulation of response to salt stress2.71E-03
90GO:0048830: adventitious root development2.71E-03
91GO:0033358: UDP-L-arabinose biosynthetic process2.71E-03
92GO:0033356: UDP-L-arabinose metabolic process2.71E-03
93GO:0010188: response to microbial phytotoxin2.71E-03
94GO:0051567: histone H3-K9 methylation2.71E-03
95GO:0015867: ATP transport2.71E-03
96GO:0060548: negative regulation of cell death2.71E-03
97GO:0045227: capsule polysaccharide biosynthetic process2.71E-03
98GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.71E-03
99GO:0046283: anthocyanin-containing compound metabolic process3.47E-03
100GO:0031365: N-terminal protein amino acid modification3.47E-03
101GO:0006097: glyoxylate cycle3.47E-03
102GO:0009751: response to salicylic acid3.53E-03
103GO:0006979: response to oxidative stress4.07E-03
104GO:0006662: glycerol ether metabolic process4.26E-03
105GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.29E-03
106GO:0002238: response to molecule of fungal origin4.29E-03
107GO:0009759: indole glucosinolate biosynthetic process4.29E-03
108GO:0015866: ADP transport4.29E-03
109GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.29E-03
110GO:0010256: endomembrane system organization4.29E-03
111GO:0030643: cellular phosphate ion homeostasis5.17E-03
112GO:0048444: floral organ morphogenesis5.17E-03
113GO:0010193: response to ozone5.26E-03
114GO:0006970: response to osmotic stress5.99E-03
115GO:1900056: negative regulation of leaf senescence6.11E-03
116GO:0080186: developmental vegetative growth6.11E-03
117GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.11E-03
118GO:0071669: plant-type cell wall organization or biogenesis6.11E-03
119GO:0050829: defense response to Gram-negative bacterium6.11E-03
120GO:0006605: protein targeting7.10E-03
121GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.10E-03
122GO:0009819: drought recovery7.10E-03
123GO:0016559: peroxisome fission7.10E-03
124GO:0006644: phospholipid metabolic process7.10E-03
125GO:0009615: response to virus7.61E-03
126GO:0016192: vesicle-mediated transport8.02E-03
127GO:0019430: removal of superoxide radicals8.15E-03
128GO:0006997: nucleus organization8.15E-03
129GO:0010204: defense response signaling pathway, resistance gene-independent8.15E-03
130GO:0010497: plasmodesmata-mediated intercellular transport8.15E-03
131GO:0017004: cytochrome complex assembly8.15E-03
132GO:0010208: pollen wall assembly8.15E-03
133GO:0006906: vesicle fusion8.51E-03
134GO:0051865: protein autoubiquitination9.25E-03
135GO:0007338: single fertilization9.25E-03
136GO:0046685: response to arsenic-containing substance9.25E-03
137GO:0045454: cell redox homeostasis9.76E-03
138GO:0006886: intracellular protein transport1.02E-02
139GO:0009638: phototropism1.04E-02
140GO:2000280: regulation of root development1.04E-02
141GO:0090332: stomatal closure1.04E-02
142GO:0008202: steroid metabolic process1.04E-02
143GO:1900426: positive regulation of defense response to bacterium1.04E-02
144GO:0010043: response to zinc ion1.15E-02
145GO:0009870: defense response signaling pathway, resistance gene-dependent1.16E-02
146GO:0000103: sulfate assimilation1.16E-02
147GO:0006032: chitin catabolic process1.16E-02
148GO:0009688: abscisic acid biosynthetic process1.16E-02
149GO:0009641: shade avoidance1.16E-02
150GO:0016441: posttranscriptional gene silencing1.16E-02
151GO:0009682: induced systemic resistance1.29E-02
152GO:0052544: defense response by callose deposition in cell wall1.29E-02
153GO:0000272: polysaccharide catabolic process1.29E-02
154GO:0048765: root hair cell differentiation1.29E-02
155GO:0009684: indoleacetic acid biosynthetic process1.29E-02
156GO:0034599: cellular response to oxidative stress1.32E-02
157GO:0012501: programmed cell death1.42E-02
158GO:0045037: protein import into chloroplast stroma1.42E-02
159GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.42E-02
160GO:0000266: mitochondrial fission1.42E-02
161GO:0006631: fatty acid metabolic process1.51E-02
162GO:0006887: exocytosis1.51E-02
163GO:0030048: actin filament-based movement1.55E-02
164GO:0010102: lateral root morphogenesis1.55E-02
165GO:0009785: blue light signaling pathway1.55E-02
166GO:2000028: regulation of photoperiodism, flowering1.55E-02
167GO:0050832: defense response to fungus1.70E-02
168GO:0007033: vacuole organization1.83E-02
169GO:0006863: purine nucleobase transport1.98E-02
170GO:0080147: root hair cell development2.13E-02
171GO:0009734: auxin-activated signaling pathway2.24E-02
172GO:0010026: trichome differentiation2.29E-02
173GO:0043622: cortical microtubule organization2.29E-02
174GO:0009269: response to desiccation2.44E-02
175GO:0006417: regulation of translation2.45E-02
176GO:0005975: carbohydrate metabolic process2.60E-02
177GO:0016226: iron-sulfur cluster assembly2.61E-02
178GO:0030433: ubiquitin-dependent ERAD pathway2.61E-02
179GO:0006730: one-carbon metabolic process2.61E-02
180GO:0007005: mitochondrion organization2.61E-02
181GO:0071456: cellular response to hypoxia2.61E-02
182GO:0030245: cellulose catabolic process2.61E-02
183GO:0009723: response to ethylene2.64E-02
184GO:0009411: response to UV2.77E-02
185GO:0042147: retrograde transport, endosome to Golgi3.12E-02
186GO:0006952: defense response3.20E-02
187GO:0009611: response to wounding3.25E-02
188GO:0010118: stomatal movement3.29E-02
189GO:0006520: cellular amino acid metabolic process3.48E-02
190GO:0010182: sugar mediated signaling pathway3.48E-02
191GO:0046323: glucose import3.48E-02
192GO:0048544: recognition of pollen3.66E-02
193GO:0006814: sodium ion transport3.66E-02
194GO:0000302: response to reactive oxygen species4.04E-02
195GO:0071554: cell wall organization or biogenesis4.04E-02
196GO:0006891: intra-Golgi vesicle-mediated transport4.04E-02
197GO:0002229: defense response to oomycetes4.04E-02
198GO:0006635: fatty acid beta-oxidation4.04E-02
199GO:0006508: proteolysis4.21E-02
200GO:0009630: gravitropism4.23E-02
201GO:0071281: cellular response to iron ion4.43E-02
202GO:0019760: glucosinolate metabolic process4.63E-02
203GO:0009567: double fertilization forming a zygote and endosperm4.63E-02
204GO:0006629: lipid metabolic process4.65E-02
205GO:0009737: response to abscisic acid4.83E-02
RankGO TermAdjusted P value
1GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
2GO:0051670: inulinase activity0.00E+00
3GO:0015591: D-ribose transmembrane transporter activity0.00E+00
4GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
5GO:0015148: D-xylose transmembrane transporter activity0.00E+00
6GO:0015575: mannitol transmembrane transporter activity0.00E+00
7GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
8GO:0015576: sorbitol transmembrane transporter activity0.00E+00
9GO:0033759: flavone synthase activity0.00E+00
10GO:0102391: decanoate--CoA ligase activity2.83E-04
11GO:0003978: UDP-glucose 4-epimerase activity2.83E-04
12GO:0004467: long-chain fatty acid-CoA ligase activity3.65E-04
13GO:0032266: phosphatidylinositol-3-phosphate binding3.97E-04
14GO:0070401: NADP+ binding3.97E-04
15GO:0004348: glucosylceramidase activity3.97E-04
16GO:0051669: fructan beta-fructosidase activity3.97E-04
17GO:0031219: levanase activity3.97E-04
18GO:0015168: glycerol transmembrane transporter activity3.97E-04
19GO:2001147: camalexin binding3.97E-04
20GO:0009000: selenocysteine lyase activity3.97E-04
21GO:0015245: fatty acid transporter activity3.97E-04
22GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.97E-04
23GO:0004649: poly(ADP-ribose) glycohydrolase activity3.97E-04
24GO:0090353: polygalacturonase inhibitor activity3.97E-04
25GO:0016229: steroid dehydrogenase activity3.97E-04
26GO:0010179: IAA-Ala conjugate hydrolase activity3.97E-04
27GO:2001227: quercitrin binding3.97E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity3.97E-04
29GO:0004364: glutathione transferase activity4.14E-04
30GO:0004791: thioredoxin-disulfide reductase activity5.52E-04
31GO:0008428: ribonuclease inhibitor activity8.60E-04
32GO:0032934: sterol binding8.60E-04
33GO:0052691: UDP-arabinopyranose mutase activity8.60E-04
34GO:0050736: O-malonyltransferase activity8.60E-04
35GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity8.60E-04
36GO:0010331: gibberellin binding8.60E-04
37GO:0003994: aconitate hydratase activity8.60E-04
38GO:0004806: triglyceride lipase activity1.28E-03
39GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.40E-03
40GO:0043169: cation binding1.40E-03
41GO:0003979: UDP-glucose 6-dehydrogenase activity1.40E-03
42GO:0004478: methionine adenosyltransferase activity1.40E-03
43GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.40E-03
44GO:0004970: ionotropic glutamate receptor activity1.73E-03
45GO:0005217: intracellular ligand-gated ion channel activity1.73E-03
46GO:0035529: NADH pyrophosphatase activity2.02E-03
47GO:0005354: galactose transmembrane transporter activity2.02E-03
48GO:0010178: IAA-amino acid conjugate hydrolase activity2.02E-03
49GO:0016656: monodehydroascorbate reductase (NADH) activity2.02E-03
50GO:0004449: isocitrate dehydrogenase (NAD+) activity2.02E-03
51GO:0005432: calcium:sodium antiporter activity2.02E-03
52GO:0008106: alcohol dehydrogenase (NADP+) activity2.02E-03
53GO:0050378: UDP-glucuronate 4-epimerase activity2.71E-03
54GO:0009916: alternative oxidase activity2.71E-03
55GO:0016866: intramolecular transferase activity2.71E-03
56GO:0050373: UDP-arabinose 4-epimerase activity2.71E-03
57GO:0008810: cellulase activity3.10E-03
58GO:0004499: N,N-dimethylaniline monooxygenase activity3.37E-03
59GO:0015145: monosaccharide transmembrane transporter activity3.47E-03
60GO:0018685: alkane 1-monooxygenase activity3.47E-03
61GO:0008948: oxaloacetate decarboxylase activity3.47E-03
62GO:0047631: ADP-ribose diphosphatase activity3.47E-03
63GO:0030151: molybdenum ion binding3.47E-03
64GO:0047134: protein-disulfide reductase activity3.65E-03
65GO:0000210: NAD+ diphosphatase activity4.29E-03
66GO:0008200: ion channel inhibitor activity4.29E-03
67GO:0004602: glutathione peroxidase activity5.17E-03
68GO:0005347: ATP transmembrane transporter activity5.17E-03
69GO:0004656: procollagen-proline 4-dioxygenase activity5.17E-03
70GO:0015217: ADP transmembrane transporter activity5.17E-03
71GO:0051920: peroxiredoxin activity5.17E-03
72GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.99E-03
73GO:0008235: metalloexopeptidase activity6.11E-03
74GO:0008320: protein transmembrane transporter activity6.11E-03
75GO:0043295: glutathione binding6.11E-03
76GO:0004620: phospholipase activity6.11E-03
77GO:0016791: phosphatase activity6.38E-03
78GO:0015035: protein disulfide oxidoreductase activity6.51E-03
79GO:0008237: metallopeptidase activity6.78E-03
80GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity7.10E-03
81GO:0004034: aldose 1-epimerase activity7.10E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity7.10E-03
83GO:0005544: calcium-dependent phospholipid binding7.10E-03
84GO:0015491: cation:cation antiporter activity7.10E-03
85GO:0004033: aldo-keto reductase (NADP) activity7.10E-03
86GO:0016209: antioxidant activity7.10E-03
87GO:0008142: oxysterol binding8.15E-03
88GO:0030247: polysaccharide binding8.98E-03
89GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity9.25E-03
90GO:0030170: pyridoxal phosphate binding9.56E-03
91GO:0047617: acyl-CoA hydrolase activity1.04E-02
92GO:0008565: protein transporter activity1.05E-02
93GO:0030145: manganese ion binding1.15E-02
94GO:0004568: chitinase activity1.16E-02
95GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.27E-02
96GO:0004177: aminopeptidase activity1.29E-02
97GO:0000149: SNARE binding1.38E-02
98GO:0045551: cinnamyl-alcohol dehydrogenase activity1.42E-02
99GO:0051539: 4 iron, 4 sulfur cluster binding1.44E-02
100GO:0050661: NADP binding1.44E-02
101GO:0005484: SNAP receptor activity1.64E-02
102GO:0003774: motor activity1.69E-02
103GO:0008061: chitin binding1.83E-02
104GO:0003712: transcription cofactor activity1.83E-02
105GO:0004867: serine-type endopeptidase inhibitor activity1.83E-02
106GO:0005198: structural molecule activity1.84E-02
107GO:0051287: NAD binding1.98E-02
108GO:0016787: hydrolase activity2.03E-02
109GO:0043130: ubiquitin binding2.13E-02
110GO:0001046: core promoter sequence-specific DNA binding2.13E-02
111GO:0051536: iron-sulfur cluster binding2.13E-02
112GO:0031418: L-ascorbic acid binding2.13E-02
113GO:0004601: peroxidase activity2.20E-02
114GO:0005345: purine nucleobase transmembrane transporter activity2.29E-02
115GO:0050660: flavin adenine dinucleotide binding2.64E-02
116GO:0016760: cellulose synthase (UDP-forming) activity2.77E-02
117GO:0005509: calcium ion binding2.87E-02
118GO:0004497: monooxygenase activity2.87E-02
119GO:0003727: single-stranded RNA binding2.94E-02
120GO:0022857: transmembrane transporter activity2.96E-02
121GO:0016746: transferase activity, transferring acyl groups3.24E-02
122GO:0030276: clathrin binding3.48E-02
123GO:0005355: glucose transmembrane transporter activity3.66E-02
124GO:0050662: coenzyme binding3.66E-02
125GO:0016853: isomerase activity3.66E-02
126GO:0004871: signal transducer activity3.81E-02
127GO:0042803: protein homodimerization activity3.81E-02
128GO:0005515: protein binding4.18E-02
129GO:0008483: transaminase activity4.83E-02
130GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.83E-02
RankGO TermAdjusted P value
1GO:0030121: AP-1 adaptor complex0.00E+00
2GO:0005794: Golgi apparatus6.93E-07
3GO:0005886: plasma membrane1.22E-05
4GO:0005829: cytosol1.75E-04
5GO:0045252: oxoglutarate dehydrogenase complex3.97E-04
6GO:0000138: Golgi trans cisterna3.97E-04
7GO:0016021: integral component of membrane4.06E-04
8GO:0032580: Golgi cisterna membrane8.40E-04
9GO:0000814: ESCRT II complex8.60E-04
10GO:0017119: Golgi transport complex9.20E-04
11GO:0042406: extrinsic component of endoplasmic reticulum membrane1.40E-03
12GO:0030658: transport vesicle membrane2.02E-03
13GO:0005618: cell wall2.53E-03
14GO:0005783: endoplasmic reticulum2.62E-03
15GO:0005768: endosome3.18E-03
16GO:0005789: endoplasmic reticulum membrane3.63E-03
17GO:0009504: cell plate4.91E-03
18GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane6.11E-03
19GO:0009986: cell surface6.11E-03
20GO:0030131: clathrin adaptor complex7.10E-03
21GO:0005802: trans-Golgi network7.46E-03
22GO:0005788: endoplasmic reticulum lumen8.06E-03
23GO:0005779: integral component of peroxisomal membrane8.15E-03
24GO:0031901: early endosome membrane9.25E-03
25GO:0030665: clathrin-coated vesicle membrane1.04E-02
26GO:0008540: proteasome regulatory particle, base subcomplex1.04E-02
27GO:0048046: apoplast1.16E-02
28GO:0031201: SNARE complex1.51E-02
29GO:0031012: extracellular matrix1.55E-02
30GO:0046658: anchored component of plasma membrane1.80E-02
31GO:0009505: plant-type cell wall1.81E-02
32GO:0005795: Golgi stack1.83E-02
33GO:0005769: early endosome1.98E-02
34GO:0070469: respiratory chain2.29E-02
35GO:0005741: mitochondrial outer membrane2.44E-02
36GO:0005905: clathrin-coated pit2.44E-02
37GO:0005770: late endosome3.48E-02
38GO:0009506: plasmodesma3.68E-02
39GO:0031965: nuclear membrane3.85E-02
40GO:0019898: extrinsic component of membrane3.85E-02
41GO:0016592: mediator complex4.23E-02
42GO:0005743: mitochondrial inner membrane4.25E-02
43GO:0071944: cell periphery4.43E-02
44GO:0005778: peroxisomal membrane4.83E-02
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Gene type



Gene DE type