co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0030155: regulation of cell adhesion	0.00E+00
6	GO:0019323: pentose catabolic process	0.00E+00
7	GO:0090706: specification of plant organ position	0.00E+00
8	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
11	GO:1905177: tracheary element differentiation	0.00E+00
12	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
13	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
14	GO:0007638: mechanosensory behavior	0.00E+00
15	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
16	GO:0006399: tRNA metabolic process	0.00E+00
17	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
18	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
19	GO:0070125: mitochondrial translational elongation	0.00E+00
20	GO:0070979: protein K11-linked ubiquitination	0.00E+00
21	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
22	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
23	GO:0046620: regulation of organ growth	1.92E-06
24	GO:0009658: chloroplast organization	2.35E-05
25	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.42E-05
26	GO:0010027: thylakoid membrane organization	8.10E-05
27	GO:0071482: cellular response to light stimulus	1.03E-04
28	GO:0015995: chlorophyll biosynthetic process	1.16E-04
29	GO:2001141: regulation of RNA biosynthetic process	1.60E-04
30	GO:0016556: mRNA modification	1.60E-04
31	GO:1900865: chloroplast RNA modification	1.76E-04
32	GO:0009765: photosynthesis, light harvesting	2.70E-04
33	GO:0010375: stomatal complex patterning	4.04E-04
34	GO:0010236: plastoquinone biosynthetic process	4.04E-04
35	GO:0045038: protein import into chloroplast thylakoid membrane	4.04E-04
36	GO:0016123: xanthophyll biosynthetic process	4.04E-04
37	GO:0009733: response to auxin	4.37E-04
38	GO:0010207: photosystem II assembly	4.63E-04
39	GO:0030488: tRNA methylation	7.41E-04
40	GO:0042372: phylloquinone biosynthetic process	7.41E-04
41	GO:0006419: alanyl-tRNA aminoacylation	7.56E-04
42	GO:0070509: calcium ion import	7.56E-04
43	GO:0044262: cellular carbohydrate metabolic process	7.56E-04
44	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	7.56E-04
45	GO:0000025: maltose catabolic process	7.56E-04
46	GO:0043266: regulation of potassium ion transport	7.56E-04
47	GO:0010063: positive regulation of trichoblast fate specification	7.56E-04
48	GO:0010480: microsporocyte differentiation	7.56E-04
49	GO:0010080: regulation of floral meristem growth	7.56E-04
50	GO:0042759: long-chain fatty acid biosynthetic process	7.56E-04
51	GO:0005980: glycogen catabolic process	7.56E-04
52	GO:0042371: vitamin K biosynthetic process	7.56E-04
53	GO:2000021: regulation of ion homeostasis	7.56E-04
54	GO:0051247: positive regulation of protein metabolic process	7.56E-04
55	GO:1902458: positive regulation of stomatal opening	7.56E-04
56	GO:0015904: tetracycline transport	7.56E-04
57	GO:2000905: negative regulation of starch metabolic process	7.56E-04
58	GO:0005991: trehalose metabolic process	7.56E-04
59	GO:0048363: mucilage pectin metabolic process	7.56E-04
60	GO:0010450: inflorescence meristem growth	7.56E-04
61	GO:0040008: regulation of growth	7.64E-04
62	GO:0009451: RNA modification	8.77E-04
63	GO:0048437: floral organ development	9.45E-04
64	GO:0015979: photosynthesis	1.19E-03
65	GO:0016117: carotenoid biosynthetic process	1.40E-03
66	GO:0032544: plastid translation	1.43E-03
67	GO:0009734: auxin-activated signaling pathway	1.49E-03
68	GO:1900871: chloroplast mRNA modification	1.63E-03
69	GO:1901959: positive regulation of cutin biosynthetic process	1.63E-03
70	GO:0018026: peptidyl-lysine monomethylation	1.63E-03
71	GO:0060359: response to ammonium ion	1.63E-03
72	GO:0048255: mRNA stabilization	1.63E-03
73	GO:0071668: plant-type cell wall assembly	1.63E-03
74	GO:0009786: regulation of asymmetric cell division	1.63E-03
75	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.63E-03
76	GO:2000123: positive regulation of stomatal complex development	1.63E-03
77	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.63E-03
78	GO:0010305: leaf vascular tissue pattern formation	1.71E-03
79	GO:0009926: auxin polar transport	1.96E-03
80	GO:0009638: phototropism	2.04E-03
81	GO:0006779: porphyrin-containing compound biosynthetic process	2.04E-03
82	GO:0006782: protoporphyrinogen IX biosynthetic process	2.38E-03
83	GO:0007275: multicellular organism development	2.56E-03
84	GO:0009416: response to light stimulus	2.60E-03
85	GO:0033591: response to L-ascorbic acid	2.70E-03
86	GO:0048281: inflorescence morphogenesis	2.70E-03
87	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.70E-03
88	GO:1902448: positive regulation of shade avoidance	2.70E-03
89	GO:0010623: programmed cell death involved in cell development	2.70E-03
90	GO:0080055: low-affinity nitrate transport	2.70E-03
91	GO:0006696: ergosterol biosynthetic process	2.70E-03
92	GO:0010022: meristem determinacy	2.70E-03
93	GO:0043157: response to cation stress	2.70E-03
94	GO:0045165: cell fate commitment	2.70E-03
95	GO:1904278: positive regulation of wax biosynthetic process	2.70E-03
96	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.70E-03
97	GO:0048586: regulation of long-day photoperiodism, flowering	2.70E-03
98	GO:0006352: DNA-templated transcription, initiation	2.76E-03
99	GO:0009773: photosynthetic electron transport in photosystem I	2.76E-03
100	GO:0019684: photosynthesis, light reaction	2.76E-03
101	GO:0009664: plant-type cell wall organization	2.78E-03
102	GO:0009828: plant-type cell wall loosening	2.88E-03
103	GO:0005983: starch catabolic process	3.17E-03
104	GO:2000012: regulation of auxin polar transport	3.61E-03
105	GO:0009725: response to hormone	3.61E-03
106	GO:0010731: protein glutathionylation	3.93E-03
107	GO:0046739: transport of virus in multicellular host	3.93E-03
108	GO:0019048: modulation by virus of host morphology or physiology	3.93E-03
109	GO:0043572: plastid fission	3.93E-03
110	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.93E-03
111	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	3.93E-03
112	GO:0031048: chromatin silencing by small RNA	3.93E-03
113	GO:0010148: transpiration	3.93E-03
114	GO:1990019: protein storage vacuole organization	3.93E-03
115	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.93E-03
116	GO:0010071: root meristem specification	3.93E-03
117	GO:0007231: osmosensory signaling pathway	3.93E-03
118	GO:0009102: biotin biosynthetic process	3.93E-03
119	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.93E-03
120	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.93E-03
121	GO:0009793: embryo development ending in seed dormancy	4.22E-03
122	GO:0070588: calcium ion transmembrane transport	4.58E-03
123	GO:0018298: protein-chromophore linkage	5.09E-03
124	GO:0010025: wax biosynthetic process	5.11E-03
125	GO:2000038: regulation of stomatal complex development	5.32E-03
126	GO:2000306: positive regulation of photomorphogenesis	5.32E-03
127	GO:0006109: regulation of carbohydrate metabolic process	5.32E-03
128	GO:0022622: root system development	5.32E-03
129	GO:0045723: positive regulation of fatty acid biosynthetic process	5.32E-03
130	GO:0051567: histone H3-K9 methylation	5.32E-03
131	GO:0010508: positive regulation of autophagy	5.32E-03
132	GO:0008295: spermidine biosynthetic process	5.32E-03
133	GO:0010109: regulation of photosynthesis	5.32E-03
134	GO:2000122: negative regulation of stomatal complex development	5.32E-03
135	GO:0033500: carbohydrate homeostasis	5.32E-03
136	GO:0009944: polarity specification of adaxial/abaxial axis	5.68E-03
137	GO:0009742: brassinosteroid mediated signaling pathway	5.83E-03
138	GO:0007017: microtubule-based process	6.28E-03
139	GO:0010158: abaxial cell fate specification	6.84E-03
140	GO:0032876: negative regulation of DNA endoreduplication	6.84E-03
141	GO:0048497: maintenance of floral organ identity	6.84E-03
142	GO:0016120: carotene biosynthetic process	6.84E-03
143	GO:0009107: lipoate biosynthetic process	6.84E-03
144	GO:1902183: regulation of shoot apical meristem development	6.84E-03
145	GO:0000304: response to singlet oxygen	6.84E-03
146	GO:0080110: sporopollenin biosynthetic process	6.84E-03
147	GO:0006730: one-carbon metabolic process	7.57E-03
148	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.28E-03
149	GO:0033365: protein localization to organelle	8.50E-03
150	GO:0016458: gene silencing	8.50E-03
151	GO:0016554: cytidine to uridine editing	8.50E-03
152	GO:0032973: amino acid export	8.50E-03
153	GO:0010405: arabinogalactan protein metabolic process	8.50E-03
154	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.50E-03
155	GO:0000741: karyogamy	8.50E-03
156	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	8.50E-03
157	GO:0009913: epidermal cell differentiation	8.50E-03
158	GO:0006655: phosphatidylglycerol biosynthetic process	8.50E-03
159	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.50E-03
160	GO:0009959: negative gravitropism	8.50E-03
161	GO:0009790: embryo development	9.53E-03
162	GO:0071333: cellular response to glucose stimulus	1.03E-02
163	GO:0006458: 'de novo' protein folding	1.03E-02
164	GO:0017148: negative regulation of translation	1.03E-02
165	GO:0048280: vesicle fusion with Golgi apparatus	1.03E-02
166	GO:0042026: protein refolding	1.03E-02
167	GO:1901259: chloroplast rRNA processing	1.03E-02
168	GO:0080086: stamen filament development	1.03E-02
169	GO:0010087: phloem or xylem histogenesis	1.06E-02
170	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.09E-02
171	GO:0006662: glycerol ether metabolic process	1.14E-02
172	GO:0010182: sugar mediated signaling pathway	1.14E-02
173	GO:0070370: cellular heat acclimation	1.22E-02
174	GO:0009772: photosynthetic electron transport in photosystem II	1.22E-02
175	GO:0043090: amino acid import	1.22E-02
176	GO:0010444: guard mother cell differentiation	1.22E-02
177	GO:0006400: tRNA modification	1.22E-02
178	GO:0030307: positive regulation of cell growth	1.22E-02
179	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.22E-02
180	GO:0015693: magnesium ion transport	1.22E-02
181	GO:0010103: stomatal complex morphogenesis	1.22E-02
182	GO:0032880: regulation of protein localization	1.22E-02
183	GO:0010374: stomatal complex development	1.22E-02
184	GO:0048528: post-embryonic root development	1.22E-02
185	GO:0007155: cell adhesion	1.42E-02
186	GO:0048564: photosystem I assembly	1.42E-02
187	GO:0006605: protein targeting	1.42E-02
188	GO:0032875: regulation of DNA endoreduplication	1.42E-02
189	GO:2000070: regulation of response to water deprivation	1.42E-02
190	GO:0042255: ribosome assembly	1.42E-02
191	GO:0000105: histidine biosynthetic process	1.42E-02
192	GO:0006353: DNA-templated transcription, termination	1.42E-02
193	GO:0070413: trehalose metabolism in response to stress	1.42E-02
194	GO:0007166: cell surface receptor signaling pathway	1.51E-02
195	GO:0032502: developmental process	1.51E-02
196	GO:0015996: chlorophyll catabolic process	1.64E-02
197	GO:0010052: guard cell differentiation	1.64E-02
198	GO:0007186: G-protein coupled receptor signaling pathway	1.64E-02
199	GO:0010497: plasmodesmata-mediated intercellular transport	1.64E-02
200	GO:0009657: plastid organization	1.64E-02
201	GO:0010093: specification of floral organ identity	1.64E-02
202	GO:0001558: regulation of cell growth	1.64E-02
203	GO:0007267: cell-cell signaling	1.83E-02
204	GO:0080144: amino acid homeostasis	1.86E-02
205	GO:2000024: regulation of leaf development	1.86E-02
206	GO:0046916: cellular transition metal ion homeostasis	1.86E-02
207	GO:0009051: pentose-phosphate shunt, oxidative branch	1.86E-02
208	GO:0000373: Group II intron splicing	1.86E-02
209	GO:0048507: meristem development	1.86E-02
210	GO:0000902: cell morphogenesis	1.86E-02
211	GO:0016042: lipid catabolic process	1.92E-02
212	GO:0051607: defense response to virus	1.94E-02
213	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.10E-02
214	GO:0031425: chloroplast RNA processing	2.10E-02
215	GO:0042761: very long-chain fatty acid biosynthetic process	2.10E-02
216	GO:0009826: unidimensional cell growth	2.24E-02
217	GO:0010629: negative regulation of gene expression	2.35E-02
218	GO:0006896: Golgi to vacuole transport	2.35E-02
219	GO:0030422: production of siRNA involved in RNA interference	2.35E-02
220	GO:0048829: root cap development	2.35E-02
221	GO:0045036: protein targeting to chloroplast	2.35E-02
222	GO:0009641: shade avoidance	2.35E-02
223	GO:0006949: syncytium formation	2.35E-02
224	GO:0009299: mRNA transcription	2.35E-02
225	GO:0009089: lysine biosynthetic process via diaminopimelate	2.60E-02
226	GO:0009073: aromatic amino acid family biosynthetic process	2.60E-02
227	GO:0043085: positive regulation of catalytic activity	2.60E-02
228	GO:0006816: calcium ion transport	2.60E-02
229	GO:0018119: peptidyl-cysteine S-nitrosylation	2.60E-02
230	GO:0048229: gametophyte development	2.60E-02
231	GO:0006415: translational termination	2.60E-02
232	GO:0016024: CDP-diacylglycerol biosynthetic process	2.87E-02
233	GO:0045037: protein import into chloroplast stroma	2.87E-02
234	GO:0010582: floral meristem determinacy	2.87E-02
235	GO:0048366: leaf development	3.02E-02
236	GO:0010628: positive regulation of gene expression	3.14E-02
237	GO:0010588: cotyledon vascular tissue pattern formation	3.14E-02
238	GO:0006006: glucose metabolic process	3.14E-02
239	GO:0009785: blue light signaling pathway	3.14E-02
240	GO:0050826: response to freezing	3.14E-02
241	GO:0009718: anthocyanin-containing compound biosynthetic process	3.14E-02
242	GO:0010075: regulation of meristem growth	3.14E-02
243	GO:0009767: photosynthetic electron transport chain	3.14E-02
244	GO:0006810: transport	3.22E-02
245	GO:0071555: cell wall organization	3.24E-02
246	GO:0045087: innate immune response	3.41E-02
247	GO:0016051: carbohydrate biosynthetic process	3.41E-02
248	GO:0010020: chloroplast fission	3.42E-02
249	GO:0009933: meristem structural organization	3.42E-02
250	GO:0009887: animal organ morphogenesis	3.42E-02
251	GO:0009266: response to temperature stimulus	3.42E-02
252	GO:0009934: regulation of meristem structural organization	3.42E-02
253	GO:0005975: carbohydrate metabolic process	3.46E-02
254	GO:0034599: cellular response to oxidative stress	3.57E-02
255	GO:0019853: L-ascorbic acid biosynthetic process	3.71E-02
256	GO:0010030: positive regulation of seed germination	3.71E-02
257	GO:0006839: mitochondrial transport	3.88E-02
258	GO:0030001: metal ion transport	3.88E-02
259	GO:0000162: tryptophan biosynthetic process	4.01E-02
260	GO:0045454: cell redox homeostasis	4.23E-02
261	GO:0005992: trehalose biosynthetic process	4.32E-02
262	GO:0008299: isoprenoid biosynthetic process	4.63E-02
263	GO:0051302: regulation of cell division	4.63E-02
264	GO:0031408: oxylipin biosynthetic process	4.95E-02
265	GO:0061077: chaperone-mediated protein folding	4.95E-02
266	GO:0006306: DNA methylation	4.95E-02
267	GO:0048511: rhythmic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0015267: channel activity	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
9	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
12	GO:0005048: signal sequence binding	0.00E+00
13	GO:0004076: biotin synthase activity	0.00E+00
14	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
15	GO:0005528: FK506 binding	6.66E-05
16	GO:0003913: DNA photolyase activity	7.79E-05
17	GO:0043023: ribosomal large subunit binding	1.60E-04
18	GO:0001872: (1->3)-beta-D-glucan binding	1.60E-04
19	GO:0016987: sigma factor activity	2.70E-04
20	GO:0019199: transmembrane receptor protein kinase activity	2.70E-04
21	GO:0043495: protein anchor	2.70E-04
22	GO:0001053: plastid sigma factor activity	2.70E-04
23	GO:0031072: heat shock protein binding	3.93E-04
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.09E-04
25	GO:0004462: lactoylglutathione lyase activity	5.60E-04
26	GO:0004134: 4-alpha-glucanotransferase activity	7.56E-04
27	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.56E-04
28	GO:0004645: phosphorylase activity	7.56E-04
29	GO:0005227: calcium activated cation channel activity	7.56E-04
30	GO:0019203: carbohydrate phosphatase activity	7.56E-04
31	GO:0008184: glycogen phosphorylase activity	7.56E-04
32	GO:0005080: protein kinase C binding	7.56E-04
33	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	7.56E-04
34	GO:0050308: sugar-phosphatase activity	7.56E-04
35	GO:0004813: alanine-tRNA ligase activity	7.56E-04
36	GO:0051996: squalene synthase activity	7.56E-04
37	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	7.56E-04
38	GO:0050139: nicotinate-N-glucosyltransferase activity	7.56E-04
39	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.56E-04
40	GO:0051777: ent-kaurenoate oxidase activity	7.56E-04
41	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	7.56E-04
42	GO:0004519: endonuclease activity	8.00E-04
43	GO:0019899: enzyme binding	9.45E-04
44	GO:0003727: single-stranded RNA binding	1.27E-03
45	GO:0004750: ribulose-phosphate 3-epimerase activity	1.63E-03
46	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.63E-03
47	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.63E-03
48	GO:0008805: carbon-monoxide oxygenase activity	1.63E-03
49	GO:0008493: tetracycline transporter activity	1.63E-03
50	GO:0017118: lipoyltransferase activity	1.63E-03
51	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.63E-03
52	GO:0043425: bHLH transcription factor binding	1.63E-03
53	GO:0004766: spermidine synthase activity	1.63E-03
54	GO:0003723: RNA binding	1.80E-03
55	GO:0004180: carboxypeptidase activity	2.70E-03
56	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.70E-03
57	GO:0016992: lipoate synthase activity	2.70E-03
58	GO:0016805: dipeptidase activity	2.70E-03
59	GO:0070402: NADPH binding	2.70E-03
60	GO:0080054: low-affinity nitrate transmembrane transporter activity	2.70E-03
61	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	2.70E-03
62	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.70E-03
63	GO:0005504: fatty acid binding	2.70E-03
64	GO:0005200: structural constituent of cytoskeleton	3.11E-03
65	GO:0005262: calcium channel activity	3.61E-03
66	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	3.93E-03
67	GO:0016149: translation release factor activity, codon specific	3.93E-03
68	GO:0035197: siRNA binding	3.93E-03
69	GO:0016851: magnesium chelatase activity	3.93E-03
70	GO:0017057: 6-phosphogluconolactonase activity	3.93E-03
71	GO:0008266: poly(U) RNA binding	4.08E-03
72	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.32E-03
73	GO:0042277: peptide binding	5.32E-03
74	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	5.32E-03
75	GO:0004659: prenyltransferase activity	5.32E-03
76	GO:0016279: protein-lysine N-methyltransferase activity	5.32E-03
77	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.32E-03
78	GO:0045430: chalcone isomerase activity	5.32E-03
79	GO:0051082: unfolded protein binding	5.33E-03
80	GO:0003924: GTPase activity	6.65E-03
81	GO:0016773: phosphotransferase activity, alcohol group as acceptor	6.84E-03
82	GO:0008725: DNA-3-methyladenine glycosylase activity	6.84E-03
83	GO:0004176: ATP-dependent peptidase activity	6.91E-03
84	GO:0030570: pectate lyase activity	8.28E-03
85	GO:0022891: substrate-specific transmembrane transporter activity	8.28E-03
86	GO:0016208: AMP binding	8.50E-03
87	GO:2001070: starch binding	8.50E-03
88	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.50E-03
89	GO:0047134: protein-disulfide reductase activity	9.78E-03
90	GO:0051753: mannan synthase activity	1.03E-02
91	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.03E-02
92	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.03E-02
93	GO:0051920: peroxiredoxin activity	1.03E-02
94	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.11E-02
95	GO:0009881: photoreceptor activity	1.22E-02
96	GO:0052689: carboxylic ester hydrolase activity	1.22E-02
97	GO:0004791: thioredoxin-disulfide reductase activity	1.23E-02
98	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.40E-02
99	GO:0008312: 7S RNA binding	1.42E-02
100	GO:0004033: aldo-keto reductase (NADP) activity	1.42E-02
101	GO:0016209: antioxidant activity	1.42E-02
102	GO:0003690: double-stranded DNA binding	1.47E-02
103	GO:0004871: signal transducer activity	1.52E-02
104	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.62E-02
105	GO:0046914: transition metal ion binding	1.64E-02
106	GO:0008173: RNA methyltransferase activity	1.64E-02
107	GO:0008237: metallopeptidase activity	1.83E-02
108	GO:0003747: translation release factor activity	1.86E-02
109	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.86E-02
110	GO:0016597: amino acid binding	1.94E-02
111	GO:0005525: GTP binding	2.12E-02
112	GO:0016168: chlorophyll binding	2.18E-02
113	GO:0015035: protein disulfide oxidoreductase activity	2.28E-02
114	GO:0008047: enzyme activator activity	2.35E-02
115	GO:0015020: glucuronosyltransferase activity	2.35E-02
116	GO:0030247: polysaccharide binding	2.43E-02
117	GO:0016788: hydrolase activity, acting on ester bonds	2.44E-02
118	GO:0044183: protein binding involved in protein folding	2.60E-02
119	GO:0047372: acylglycerol lipase activity	2.60E-02
120	GO:0004161: dimethylallyltranstransferase activity	2.60E-02
121	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.69E-02
122	GO:0016758: transferase activity, transferring hexosyl groups	2.82E-02
123	GO:0004521: endoribonuclease activity	2.87E-02
124	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.87E-02
125	GO:0000049: tRNA binding	2.87E-02
126	GO:0008378: galactosyltransferase activity	2.87E-02
127	GO:0004222: metalloendopeptidase activity	2.97E-02
128	GO:0015266: protein channel activity	3.14E-02
129	GO:0004089: carbonate dehydratase activity	3.14E-02
130	GO:0015095: magnesium ion transmembrane transporter activity	3.14E-02
131	GO:0016829: lyase activity	3.22E-02
132	GO:0003746: translation elongation factor activity	3.41E-02
133	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.42E-02
134	GO:0008083: growth factor activity	3.42E-02
135	GO:0008146: sulfotransferase activity	3.71E-02
136	GO:0004364: glutathione transferase activity	4.22E-02
137	GO:0051536: iron-sulfur cluster binding	4.32E-02
138	GO:0004857: enzyme inhibitor activity	4.32E-02
139	GO:0004185: serine-type carboxypeptidase activity	4.39E-02
140	GO:0043424: protein histidine kinase binding	4.63E-02
141	GO:0005345: purine nucleobase transmembrane transporter activity	4.63E-02
142	GO:0035091: phosphatidylinositol binding	4.74E-02
143	GO:0033612: receptor serine/threonine kinase binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.21E-34
2	GO:0009570: chloroplast stroma	8.61E-19
3	GO:0009941: chloroplast envelope	2.39E-12
4	GO:0009535: chloroplast thylakoid membrane	1.01E-07
5	GO:0009543: chloroplast thylakoid lumen	1.12E-06
6	GO:0009579: thylakoid	1.40E-06
7	GO:0009534: chloroplast thylakoid	1.49E-06
8	GO:0031969: chloroplast membrane	8.25E-06
9	GO:0009654: photosystem II oxygen evolving complex	8.09E-05
10	GO:0019898: extrinsic component of membrane	3.02E-04
11	GO:0005886: plasma membrane	4.36E-04
12	GO:0010319: stromule	5.09E-04
13	GO:0009344: nitrite reductase complex [NAD(P)H]	7.56E-04
14	GO:0042651: thylakoid membrane	8.06E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	1.63E-03
16	GO:0031977: thylakoid lumen	1.72E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.72E-03
18	GO:0009528: plastid inner membrane	2.70E-03
19	GO:0019897: extrinsic component of plasma membrane	2.70E-03
20	GO:0010007: magnesium chelatase complex	2.70E-03
21	GO:0030139: endocytic vesicle	2.70E-03
22	GO:0009508: plastid chromosome	3.61E-03
23	GO:0030529: intracellular ribonucleoprotein complex	3.62E-03
24	GO:0042646: plastid nucleoid	3.93E-03
25	GO:0005719: nuclear euchromatin	3.93E-03
26	GO:0032585: multivesicular body membrane	3.93E-03
27	GO:0015630: microtubule cytoskeleton	3.93E-03
28	GO:0030095: chloroplast photosystem II	4.08E-03
29	GO:0009707: chloroplast outer membrane	5.09E-03
30	GO:0030663: COPI-coated vesicle membrane	5.32E-03
31	GO:0009527: plastid outer membrane	5.32E-03
32	GO:0046658: anchored component of plasma membrane	5.36E-03
33	GO:0043231: intracellular membrane-bounded organelle	8.06E-03
34	GO:0009536: plastid	9.17E-03
35	GO:0005874: microtubule	9.68E-03
36	GO:0009533: chloroplast stromal thylakoid	1.22E-02
37	GO:0042807: central vacuole	1.22E-02
38	GO:0009986: cell surface	1.22E-02
39	GO:0009523: photosystem II	1.32E-02
40	GO:0012507: ER to Golgi transport vesicle membrane	1.42E-02
41	GO:0009501: amyloplast	1.42E-02
42	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.64E-02
43	GO:0000326: protein storage vacuole	1.64E-02
44	GO:0009295: nucleoid	1.83E-02
45	GO:0042644: chloroplast nucleoid	1.86E-02
46	GO:0005680: anaphase-promoting complex	1.86E-02
47	GO:0045298: tubulin complex	1.86E-02
48	GO:0031225: anchored component of membrane	1.90E-02
49	GO:0016604: nuclear body	2.10E-02
50	GO:0015030: Cajal body	2.10E-02
51	GO:0000418: DNA-directed RNA polymerase IV complex	2.35E-02
52	GO:0030125: clathrin vesicle coat	2.35E-02
53	GO:0000311: plastid large ribosomal subunit	2.87E-02
54	GO:0005578: proteinaceous extracellular matrix	3.14E-02
55	GO:0043234: protein complex	4.01E-02
56	GO:0005618: cell wall	4.03E-02
57	GO:0009532: plastid stroma	4.95E-02