co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:2000469: negative regulation of peroxidase activity	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0045184: establishment of protein localization	0.00E+00
8	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
9	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0046620: regulation of organ growth	2.36E-07
12	GO:0009733: response to auxin	4.74E-05
13	GO:0040008: regulation of growth	9.83E-05
14	GO:0009734: auxin-activated signaling pathway	1.33E-04
15	GO:0016131: brassinosteroid metabolic process	1.53E-04
16	GO:0030307: positive regulation of cell growth	3.80E-04
17	GO:0015904: tetracycline transport	4.07E-04
18	GO:0042659: regulation of cell fate specification	4.07E-04
19	GO:0000025: maltose catabolic process	4.07E-04
20	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.07E-04
21	GO:0090558: plant epidermis development	4.07E-04
22	GO:0046520: sphingoid biosynthetic process	4.07E-04
23	GO:0010480: microsporocyte differentiation	4.07E-04
24	GO:0035987: endodermal cell differentiation	4.07E-04
25	GO:0006568: tryptophan metabolic process	8.83E-04
26	GO:1900871: chloroplast mRNA modification	8.83E-04
27	GO:0071497: cellular response to freezing	8.83E-04
28	GO:1900033: negative regulation of trichome patterning	8.83E-04
29	GO:0009786: regulation of asymmetric cell division	8.83E-04
30	GO:0006006: glucose metabolic process	1.42E-03
31	GO:0033591: response to L-ascorbic acid	1.43E-03
32	GO:0090708: specification of plant organ axis polarity	1.43E-03
33	GO:0071398: cellular response to fatty acid	1.43E-03
34	GO:0010371: regulation of gibberellin biosynthetic process	2.07E-03
35	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.07E-03
36	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.07E-03
37	GO:1990019: protein storage vacuole organization	2.07E-03
38	GO:0010306: rhamnogalacturonan II biosynthetic process	2.07E-03
39	GO:0010431: seed maturation	2.70E-03
40	GO:0048629: trichome patterning	2.78E-03
41	GO:0042274: ribosomal small subunit biogenesis	2.78E-03
42	GO:0008295: spermidine biosynthetic process	2.78E-03
43	GO:0030104: water homeostasis	2.78E-03
44	GO:0009755: hormone-mediated signaling pathway	2.78E-03
45	GO:1901141: regulation of lignin biosynthetic process	2.78E-03
46	GO:0009926: auxin polar transport	2.88E-03
47	GO:0009686: gibberellin biosynthetic process	3.22E-03
48	GO:0010438: cellular response to sulfur starvation	3.56E-03
49	GO:0045487: gibberellin catabolic process	3.56E-03
50	GO:0048497: maintenance of floral organ identity	3.56E-03
51	GO:0009959: negative gravitropism	4.41E-03
52	GO:0010358: leaf shaping	4.41E-03
53	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.41E-03
54	GO:0009913: epidermal cell differentiation	4.41E-03
55	GO:1902456: regulation of stomatal opening	4.41E-03
56	GO:0003006: developmental process involved in reproduction	4.41E-03
57	GO:0010405: arabinogalactan protein metabolic process	4.41E-03
58	GO:0009741: response to brassinosteroid	4.43E-03
59	GO:0010268: brassinosteroid homeostasis	4.43E-03
60	GO:0009646: response to absence of light	4.76E-03
61	GO:2000067: regulation of root morphogenesis	5.31E-03
62	GO:0031930: mitochondria-nucleus signaling pathway	5.31E-03
63	GO:0030488: tRNA methylation	5.31E-03
64	GO:0016132: brassinosteroid biosynthetic process	5.47E-03
65	GO:0032502: developmental process	5.85E-03
66	GO:0010583: response to cyclopentenone	5.85E-03
67	GO:1901657: glycosyl compound metabolic process	6.23E-03
68	GO:0010161: red light signaling pathway	6.28E-03
69	GO:0006955: immune response	6.28E-03
70	GO:0048437: floral organ development	6.28E-03
71	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	6.28E-03
72	GO:0010252: auxin homeostasis	6.64E-03
73	GO:0009819: drought recovery	7.30E-03
74	GO:0006402: mRNA catabolic process	7.30E-03
75	GO:0010439: regulation of glucosinolate biosynthetic process	7.30E-03
76	GO:0009690: cytokinin metabolic process	7.30E-03
77	GO:0009704: de-etiolation	7.30E-03
78	GO:2000070: regulation of response to water deprivation	7.30E-03
79	GO:0055075: potassium ion homeostasis	7.30E-03
80	GO:0010099: regulation of photomorphogenesis	8.38E-03
81	GO:0010100: negative regulation of photomorphogenesis	8.38E-03
82	GO:0009051: pentose-phosphate shunt, oxidative branch	9.51E-03
83	GO:0048507: meristem development	9.51E-03
84	GO:0006783: heme biosynthetic process	9.51E-03
85	GO:0000373: Group II intron splicing	9.51E-03
86	GO:0009416: response to light stimulus	1.06E-02
87	GO:0045892: negative regulation of transcription, DNA-templated	1.06E-02
88	GO:0009098: leucine biosynthetic process	1.07E-02
89	GO:0010018: far-red light signaling pathway	1.07E-02
90	GO:1900865: chloroplast RNA modification	1.07E-02
91	GO:0031425: chloroplast RNA processing	1.07E-02
92	GO:0009790: embryo development	1.07E-02
93	GO:2000280: regulation of root development	1.07E-02
94	GO:0009641: shade avoidance	1.19E-02
95	GO:0016441: posttranscriptional gene silencing	1.19E-02
96	GO:0009299: mRNA transcription	1.19E-02
97	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.19E-02
98	GO:0048829: root cap development	1.19E-02
99	GO:0048527: lateral root development	1.20E-02
100	GO:0010015: root morphogenesis	1.32E-02
101	GO:0009773: photosynthetic electron transport in photosystem I	1.32E-02
102	GO:0009682: induced systemic resistance	1.32E-02
103	GO:0009867: jasmonic acid mediated signaling pathway	1.32E-02
104	GO:0048229: gametophyte development	1.32E-02
105	GO:0005983: starch catabolic process	1.46E-02
106	GO:0010582: floral meristem determinacy	1.46E-02
107	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.46E-02
108	GO:0006631: fatty acid metabolic process	1.57E-02
109	GO:0009753: response to jasmonic acid	1.58E-02
110	GO:0010075: regulation of meristem growth	1.59E-02
111	GO:0009725: response to hormone	1.59E-02
112	GO:0009767: photosynthetic electron transport chain	1.59E-02
113	GO:0010588: cotyledon vascular tissue pattern formation	1.59E-02
114	GO:2000012: regulation of auxin polar transport	1.59E-02
115	GO:0010102: lateral root morphogenesis	1.59E-02
116	GO:0010628: positive regulation of gene expression	1.59E-02
117	GO:2000028: regulation of photoperiodism, flowering	1.59E-02
118	GO:0009934: regulation of meristem structural organization	1.74E-02
119	GO:0048467: gynoecium development	1.74E-02
120	GO:0006351: transcription, DNA-templated	1.88E-02
121	GO:0090351: seedling development	1.88E-02
122	GO:0006833: water transport	2.04E-02
123	GO:0019762: glucosinolate catabolic process	2.04E-02
124	GO:0042753: positive regulation of circadian rhythm	2.04E-02
125	GO:0010187: negative regulation of seed germination	2.19E-02
126	GO:0080147: root hair cell development	2.19E-02
127	GO:0005992: trehalose biosynthetic process	2.19E-02
128	GO:0051302: regulation of cell division	2.35E-02
129	GO:0006355: regulation of transcription, DNA-templated	2.40E-02
130	GO:0048511: rhythmic process	2.51E-02
131	GO:0048278: vesicle docking	2.51E-02
132	GO:0016114: terpenoid biosynthetic process	2.51E-02
133	GO:0016998: cell wall macromolecule catabolic process	2.51E-02
134	GO:0031348: negative regulation of defense response	2.68E-02
135	GO:0009693: ethylene biosynthetic process	2.85E-02
136	GO:0071215: cellular response to abscisic acid stimulus	2.85E-02
137	GO:0010082: regulation of root meristem growth	2.85E-02
138	GO:0009625: response to insect	2.85E-02
139	GO:0009740: gibberellic acid mediated signaling pathway	3.08E-02
140	GO:0010118: stomatal movement	3.39E-02
141	GO:0048653: anther development	3.39E-02
142	GO:0080022: primary root development	3.39E-02
143	GO:0010087: phloem or xylem histogenesis	3.39E-02
144	GO:0009742: brassinosteroid mediated signaling pathway	3.47E-02
145	GO:0009960: endosperm development	3.58E-02
146	GO:0010305: leaf vascular tissue pattern formation	3.58E-02
147	GO:0010182: sugar mediated signaling pathway	3.58E-02
148	GO:0048868: pollen tube development	3.58E-02
149	GO:0042752: regulation of circadian rhythm	3.77E-02
150	GO:0048544: recognition of pollen	3.77E-02
151	GO:0061025: membrane fusion	3.77E-02
152	GO:0006468: protein phosphorylation	3.81E-02
153	GO:0048825: cotyledon development	3.96E-02
154	GO:0071554: cell wall organization or biogenesis	4.15E-02
155	GO:0000302: response to reactive oxygen species	4.15E-02
156	GO:0016032: viral process	4.35E-02
157	GO:0019761: glucosinolate biosynthetic process	4.35E-02
158	GO:0009845: seed germination	4.42E-02
159	GO:0007275: multicellular organism development	4.50E-02
160	GO:0016125: sterol metabolic process	4.76E-02
161	GO:0009639: response to red or far red light	4.76E-02
162	GO:0006464: cellular protein modification process	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0010012: steroid 22-alpha hydroxylase activity	4.07E-04
4	GO:0000170: sphingosine hydroxylase activity	4.07E-04
5	GO:0050139: nicotinate-N-glucosyltransferase activity	4.07E-04
6	GO:0005227: calcium activated cation channel activity	4.07E-04
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.07E-04
8	GO:0042834: peptidoglycan binding	4.07E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.07E-04
10	GO:0010313: phytochrome binding	4.07E-04
11	GO:0004134: 4-alpha-glucanotransferase activity	4.07E-04
12	GO:0008395: steroid hydroxylase activity	4.07E-04
13	GO:0003852: 2-isopropylmalate synthase activity	8.83E-04
14	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.83E-04
15	GO:0043425: bHLH transcription factor binding	8.83E-04
16	GO:0004766: spermidine synthase activity	8.83E-04
17	GO:0042284: sphingolipid delta-4 desaturase activity	8.83E-04
18	GO:0008493: tetracycline transporter activity	8.83E-04
19	GO:0017118: lipoyltransferase activity	8.83E-04
20	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.85E-03
21	GO:0001872: (1->3)-beta-D-glucan binding	2.07E-03
22	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.07E-03
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.78E-03
24	GO:0019199: transmembrane receptor protein kinase activity	2.78E-03
25	GO:0046556: alpha-L-arabinofuranosidase activity	2.78E-03
26	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.26E-03
27	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.56E-03
28	GO:0080030: methyl indole-3-acetate esterase activity	4.41E-03
29	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.41E-03
30	GO:0004709: MAP kinase kinase kinase activity	4.41E-03
31	GO:0004130: cytochrome-c peroxidase activity	4.41E-03
32	GO:0016688: L-ascorbate peroxidase activity	4.41E-03
33	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	4.41E-03
34	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.31E-03
35	GO:0016832: aldehyde-lyase activity	5.31E-03
36	GO:0016759: cellulose synthase activity	6.64E-03
37	GO:0008173: RNA methyltransferase activity	8.38E-03
38	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.10E-03
39	GO:0102483: scopolin beta-glucosidase activity	9.35E-03
40	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.51E-03
41	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.04E-02
42	GO:0004871: signal transducer activity	1.11E-02
43	GO:0030234: enzyme regulator activity	1.19E-02
44	GO:0004805: trehalose-phosphatase activity	1.19E-02
45	GO:0004674: protein serine/threonine kinase activity	1.21E-02
46	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.32E-02
47	GO:0008422: beta-glucosidase activity	1.44E-02
48	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.46E-02
49	GO:0009055: electron carrier activity	1.58E-02
50	GO:0008146: sulfotransferase activity	1.88E-02
51	GO:0003712: transcription cofactor activity	1.88E-02
52	GO:0031418: L-ascorbic acid binding	2.19E-02
53	GO:0005528: FK506 binding	2.19E-02
54	GO:0005345: purine nucleobase transmembrane transporter activity	2.35E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	2.36E-02
56	GO:0010333: terpene synthase activity	2.51E-02
57	GO:0033612: receptor serine/threonine kinase binding	2.51E-02
58	GO:0003964: RNA-directed DNA polymerase activity	2.51E-02
59	GO:0008514: organic anion transmembrane transporter activity	3.03E-02
60	GO:0003727: single-stranded RNA binding	3.03E-02
61	GO:0016874: ligase activity	3.08E-02
62	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.58E-02
63	GO:0001085: RNA polymerase II transcription factor binding	3.58E-02
64	GO:0005199: structural constituent of cell wall	3.58E-02
65	GO:0050662: coenzyme binding	3.77E-02
66	GO:0004518: nuclease activity	4.35E-02
67	GO:0000156: phosphorelay response regulator activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0019897: extrinsic component of plasma membrane	1.43E-03
3	GO:0030139: endocytic vesicle	1.43E-03
4	GO:0032585: multivesicular body membrane	2.07E-03
5	GO:0009654: photosystem II oxygen evolving complex	2.46E-03
6	GO:0009544: chloroplast ATP synthase complex	2.78E-03
7	GO:0019898: extrinsic component of membrane	5.11E-03
8	GO:0009986: cell surface	6.28E-03
9	GO:0009501: amyloplast	7.30E-03
10	GO:0048226: Casparian strip	7.30E-03
11	GO:0010494: cytoplasmic stress granule	9.51E-03
12	GO:0005578: proteinaceous extracellular matrix	1.59E-02
13	GO:0030095: chloroplast photosystem II	1.74E-02
14	GO:0046658: anchored component of plasma membrane	1.90E-02
15	GO:0031225: anchored component of membrane	2.27E-02
16	GO:0010008: endosome membrane	2.81E-02
17	GO:0012505: endomembrane system	3.18E-02
18	GO:0005770: late endosome	3.58E-02
19	GO:0009504: cell plate	3.96E-02
20	GO:0009543: chloroplast thylakoid lumen	4.09E-02
21	GO:0009534: chloroplast thylakoid	4.38E-02