co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006907: pinocytosis	0.00E+00
2	GO:0061062: regulation of nematode larval development	2.52E-04
3	GO:0031648: protein destabilization	2.52E-04
4	GO:0009887: animal organ morphogenesis	2.55E-04
5	GO:0031145: anaphase-promoting complex-dependent catabolic process	4.19E-04
6	GO:0030071: regulation of mitotic metaphase/anaphase transition	6.01E-04
7	GO:0007276: gamete generation	6.01E-04
8	GO:0048497: maintenance of floral organ identity	1.01E-03
9	GO:0009734: auxin-activated signaling pathway	1.32E-03
10	GO:0009231: riboflavin biosynthetic process	2.00E-03
11	GO:0042255: ribosome assembly	2.00E-03
12	GO:0006353: DNA-templated transcription, termination	2.00E-03
13	GO:0009704: de-etiolation	2.00E-03
14	GO:0010492: maintenance of shoot apical meristem identity	2.00E-03
15	GO:0051865: protein autoubiquitination	2.57E-03
16	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.83E-03
17	GO:0009641: shade avoidance	3.20E-03
18	GO:0006949: syncytium formation	3.20E-03
19	GO:0045892: negative regulation of transcription, DNA-templated	3.47E-03
20	GO:0008285: negative regulation of cell proliferation	3.53E-03
21	GO:0012501: programmed cell death	3.87E-03
22	GO:0010102: lateral root morphogenesis	4.23E-03
23	GO:0006351: transcription, DNA-templated	4.32E-03
24	GO:0006302: double-strand break repair	4.59E-03
25	GO:0007034: vacuolar transport	4.59E-03
26	GO:0090351: seedling development	4.96E-03
27	GO:0006863: purine nucleobase transport	5.35E-03
28	GO:0019953: sexual reproduction	6.15E-03
29	GO:0051321: meiotic cell cycle	6.56E-03
30	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.99E-03
31	GO:0071215: cellular response to abscisic acid stimulus	7.42E-03
32	GO:0009686: gibberellin biosynthetic process	7.42E-03
33	GO:0045492: xylan biosynthetic process	7.87E-03
34	GO:0010091: trichome branching	7.87E-03
35	GO:0042127: regulation of cell proliferation	7.87E-03
36	GO:0000271: polysaccharide biosynthetic process	8.79E-03
37	GO:0045489: pectin biosynthetic process	9.26E-03
38	GO:0009958: positive gravitropism	9.26E-03
39	GO:0006814: sodium ion transport	9.74E-03
40	GO:0071554: cell wall organization or biogenesis	1.07E-02
41	GO:0032502: developmental process	1.12E-02
42	GO:0010583: response to cyclopentenone	1.12E-02
43	GO:0030163: protein catabolic process	1.18E-02
44	GO:0009567: double fertilization forming a zygote and endosperm	1.23E-02
45	GO:0019760: glucosinolate metabolic process	1.23E-02
46	GO:0009828: plant-type cell wall loosening	1.23E-02
47	GO:0000910: cytokinesis	1.34E-02
48	GO:0016126: sterol biosynthetic process	1.39E-02
49	GO:0010027: thylakoid membrane organization	1.39E-02
50	GO:0048573: photoperiodism, flowering	1.56E-02
51	GO:0016311: dephosphorylation	1.62E-02
52	GO:0006811: ion transport	1.80E-02
53	GO:0048527: lateral root development	1.86E-02
54	GO:0009867: jasmonic acid mediated signaling pathway	1.99E-02
55	GO:0016051: carbohydrate biosynthetic process	1.99E-02
56	GO:0008283: cell proliferation	2.38E-02
57	GO:0000209: protein polyubiquitination	2.45E-02
58	GO:0048364: root development	2.49E-02
59	GO:0009733: response to auxin	2.60E-02
60	GO:0009664: plant-type cell wall organization	2.80E-02
61	GO:0016567: protein ubiquitination	2.91E-02
62	GO:0006355: regulation of transcription, DNA-templated	3.09E-02
63	GO:0006417: regulation of translation	3.17E-02
64	GO:0048367: shoot system development	3.39E-02
65	GO:0009740: gibberellic acid mediated signaling pathway	3.63E-02
66	GO:0009624: response to nematode	3.78E-02
67	GO:0009742: brassinosteroid mediated signaling pathway	3.94E-02
68	GO:0009416: response to light stimulus	4.23E-02
69	GO:0006468: protein phosphorylation	4.34E-02
70	GO:0009790: embryo development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0008508: bile acid:sodium symporter activity	6.01E-04
5	GO:0004518: nuclease activity	9.14E-04
6	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.01E-03
7	GO:0003690: double-stranded DNA binding	3.55E-03
8	GO:0004722: protein serine/threonine phosphatase activity	3.82E-03
9	GO:0004190: aspartic-type endopeptidase activity	4.96E-03
10	GO:0003712: transcription cofactor activity	4.96E-03
11	GO:0005345: purine nucleobase transmembrane transporter activity	6.15E-03
12	GO:0008408: 3'-5' exonuclease activity	6.56E-03
13	GO:0004176: ATP-dependent peptidase activity	6.56E-03
14	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.99E-03
15	GO:0003727: single-stranded RNA binding	7.87E-03
16	GO:0004842: ubiquitin-protein transferase activity	8.96E-03
17	GO:0001085: RNA polymerase II transcription factor binding	9.26E-03
18	GO:0016853: isomerase activity	9.74E-03
19	GO:0004672: protein kinase activity	9.82E-03
20	GO:0008237: metallopeptidase activity	1.28E-02
21	GO:0016413: O-acetyltransferase activity	1.34E-02
22	GO:0030145: manganese ion binding	1.86E-02
23	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.86E-02
24	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.89E-02
25	GO:0042803: protein homodimerization activity	2.03E-02
26	GO:0003993: acid phosphatase activity	2.05E-02
27	GO:0043621: protein self-association	2.52E-02
28	GO:0004519: endonuclease activity	2.60E-02
29	GO:0016298: lipase activity	3.02E-02
30	GO:0031625: ubiquitin protein ligase binding	3.17E-02
31	GO:0046983: protein dimerization activity	3.22E-02
32	GO:0008026: ATP-dependent helicase activity	3.94E-02
33	GO:0016758: transferase activity, transferring hexosyl groups	4.35E-02
34	GO:0019843: rRNA binding	4.44E-02
35	GO:0016829: lyase activity	4.69E-02
36	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0000791: euchromatin	1.08E-04
3	GO:0030870: Mre11 complex	2.52E-04
4	GO:0000795: synaptonemal complex	1.01E-03
5	GO:0000815: ESCRT III complex	1.47E-03
6	GO:0005875: microtubule associated complex	5.35E-03
7	GO:0005886: plasma membrane	1.12E-02
8	GO:0000785: chromatin	1.12E-02
9	GO:0005667: transcription factor complex	1.51E-02
10	GO:0005635: nuclear envelope	3.09E-02
11	GO:0005654: nucleoplasm	4.35E-02