Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G00340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0060966: regulation of gene silencing by RNA0.00E+00
2GO:0070829: heterochromatin maintenance0.00E+00
3GO:0071360: cellular response to exogenous dsRNA0.00E+00
4GO:0010586: miRNA metabolic process0.00E+00
5GO:1900370: positive regulation of RNA interference0.00E+00
6GO:0035563: positive regulation of chromatin binding0.00E+00
7GO:0035019: somatic stem cell population maintenance0.00E+00
8GO:0033206: meiotic cytokinesis1.13E-05
9GO:1900368: regulation of RNA interference1.13E-05
10GO:1900111: positive regulation of histone H3-K9 dimethylation3.00E-05
11GO:0032776: DNA methylation on cytosine5.40E-05
12GO:0060968: regulation of gene silencing5.40E-05
13GO:0060964: regulation of gene silencing by miRNA8.23E-05
14GO:0006166: purine ribonucleoside salvage8.23E-05
15GO:0051513: regulation of monopolar cell growth8.23E-05
16GO:0006168: adenine salvage8.23E-05
17GO:0006808: regulation of nitrogen utilization1.14E-04
18GO:0031935: regulation of chromatin silencing1.14E-04
19GO:1902183: regulation of shoot apical meristem development1.49E-04
20GO:0044209: AMP salvage1.49E-04
21GO:0035435: phosphate ion transmembrane transport1.86E-04
22GO:2000033: regulation of seed dormancy process2.25E-04
23GO:0080111: DNA demethylation2.66E-04
24GO:0009938: negative regulation of gibberellic acid mediated signaling pathway3.08E-04
25GO:0010233: phloem transport3.52E-04
26GO:0030422: production of siRNA involved in RNA interference4.91E-04
27GO:0051555: flavonol biosynthetic process4.91E-04
28GO:0019538: protein metabolic process4.91E-04
29GO:0030148: sphingolipid biosynthetic process5.39E-04
30GO:0010072: primary shoot apical meristem specification5.39E-04
31GO:0080188: RNA-directed DNA methylation7.45E-04
32GO:2000377: regulation of reactive oxygen species metabolic process8.54E-04
33GO:0009863: salicylic acid mediated signaling pathway8.54E-04
34GO:0010187: negative regulation of seed germination8.54E-04
35GO:0009695: jasmonic acid biosynthetic process9.08E-04
36GO:0006306: DNA methylation9.65E-04
37GO:0031047: gene silencing by RNA1.59E-03
38GO:0051607: defense response to virus1.87E-03
39GO:0010029: regulation of seed germination2.02E-03
40GO:0016311: dephosphorylation2.25E-03
41GO:0010218: response to far red light2.48E-03
42GO:0009867: jasmonic acid mediated signaling pathway2.72E-03
43GO:0006260: DNA replication3.68E-03
44GO:0042538: hyperosmotic salinity response3.77E-03
45GO:0006417: regulation of translation4.24E-03
46GO:0006355: regulation of transcription, DNA-templated4.82E-03
47GO:0009740: gibberellic acid mediated signaling pathway4.83E-03
48GO:0009739: response to gibberellin7.93E-03
49GO:0007275: multicellular organism development9.38E-03
50GO:0009723: response to ethylene1.10E-02
51GO:0080167: response to karrikin1.16E-02
52GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.19E-02
53GO:0008152: metabolic process1.64E-02
RankGO TermAdjusted P value
1GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
2GO:0047560: 3-dehydrosphinganine reductase activity1.13E-05
3GO:0046423: allene-oxide cyclase activity5.40E-05
4GO:0035198: miRNA binding8.23E-05
5GO:0003999: adenine phosphoribosyltransferase activity8.23E-05
6GO:0016279: protein-lysine N-methyltransferase activity1.14E-04
7GO:0102425: myricetin 3-O-glucosyltransferase activity2.66E-04
8GO:0102360: daphnetin 3-O-glucosyltransferase activity2.66E-04
9GO:0080043: quercetin 3-O-glucosyltransferase activity2.70E-04
10GO:0080044: quercetin 7-O-glucosyltransferase activity2.70E-04
11GO:0047893: flavonol 3-O-glucosyltransferase activity3.08E-04
12GO:0000989: transcription factor activity, transcription factor binding3.97E-04
13GO:0015114: phosphate ion transmembrane transporter activity6.40E-04
14GO:0008081: phosphoric diester hydrolase activity6.40E-04
15GO:0003887: DNA-directed DNA polymerase activity7.99E-04
16GO:0035251: UDP-glucosyltransferase activity9.65E-04
17GO:0018024: histone-lysine N-methyltransferase activity1.20E-03
18GO:0003993: acid phosphatase activity2.80E-03
19GO:0035091: phosphatidylinositol binding3.41E-03
20GO:0004386: helicase activity5.34E-03
21GO:0008194: UDP-glycosyltransferase activity7.93E-03
22GO:0003743: translation initiation factor activity8.18E-03
23GO:0004722: protein serine/threonine phosphatase activity1.40E-02
24GO:0016757: transferase activity, transferring glycosyl groups1.63E-02
25GO:0003676: nucleic acid binding1.97E-02
26GO:0003700: transcription factor activity, sequence-specific DNA binding2.69E-02
27GO:0008270: zinc ion binding3.34E-02
28GO:0016491: oxidoreductase activity4.62E-02
29GO:0004842: ubiquitin-protein transferase activity4.78E-02
30GO:0004672: protein kinase activity4.99E-02
RankGO TermAdjusted P value
1GO:0090577: RNA polymerase IV transcription factor complex0.00E+00
2GO:0031618: nuclear pericentric heterochromatin0.00E+00
3GO:0000123: histone acetyltransferase complex2.66E-04
4GO:0000419: DNA-directed RNA polymerase V complex7.99E-04
5GO:0000775: chromosome, centromeric region1.02E-03
6GO:0043231: intracellular membrane-bounded organelle1.50E-03
7GO:0030529: intracellular ribonucleoprotein complex1.95E-03
8GO:0009506: plasmodesma1.48E-02
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Gene type



Gene DE type