GO Enrichment Analysis of Co-expressed Genes with
AT3G63520
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 2 | GO:0015843: methylammonium transport | 0.00E+00 |
| 3 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 4 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 5 | GO:0009657: plastid organization | 3.22E-05 |
| 6 | GO:0000476: maturation of 4.5S rRNA | 5.94E-05 |
| 7 | GO:0000967: rRNA 5'-end processing | 5.94E-05 |
| 8 | GO:0046467: membrane lipid biosynthetic process | 5.94E-05 |
| 9 | GO:0065002: intracellular protein transmembrane transport | 5.94E-05 |
| 10 | GO:0010028: xanthophyll cycle | 5.94E-05 |
| 11 | GO:0043953: protein transport by the Tat complex | 5.94E-05 |
| 12 | GO:0016122: xanthophyll metabolic process | 1.44E-04 |
| 13 | GO:0034470: ncRNA processing | 1.44E-04 |
| 14 | GO:0015696: ammonium transport | 3.57E-04 |
| 15 | GO:1902358: sulfate transmembrane transport | 3.57E-04 |
| 16 | GO:0009152: purine ribonucleotide biosynthetic process | 3.57E-04 |
| 17 | GO:0010601: positive regulation of auxin biosynthetic process | 3.57E-04 |
| 18 | GO:0046653: tetrahydrofolate metabolic process | 3.57E-04 |
| 19 | GO:0009765: photosynthesis, light harvesting | 4.78E-04 |
| 20 | GO:0015994: chlorophyll metabolic process | 4.78E-04 |
| 21 | GO:0072488: ammonium transmembrane transport | 4.78E-04 |
| 22 | GO:0006656: phosphatidylcholine biosynthetic process | 6.05E-04 |
| 23 | GO:0009643: photosynthetic acclimation | 7.40E-04 |
| 24 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 7.40E-04 |
| 25 | GO:0009228: thiamine biosynthetic process | 7.40E-04 |
| 26 | GO:0034599: cellular response to oxidative stress | 9.67E-04 |
| 27 | GO:0009645: response to low light intensity stimulus | 1.03E-03 |
| 28 | GO:1900056: negative regulation of leaf senescence | 1.03E-03 |
| 29 | GO:0048437: floral organ development | 1.03E-03 |
| 30 | GO:0008272: sulfate transport | 1.03E-03 |
| 31 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.03E-03 |
| 32 | GO:0010114: response to red light | 1.18E-03 |
| 33 | GO:0070413: trehalose metabolism in response to stress | 1.18E-03 |
| 34 | GO:0009821: alkaloid biosynthetic process | 1.52E-03 |
| 35 | GO:0006098: pentose-phosphate shunt | 1.52E-03 |
| 36 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.69E-03 |
| 37 | GO:0009641: shade avoidance | 1.88E-03 |
| 38 | GO:0072593: reactive oxygen species metabolic process | 2.07E-03 |
| 39 | GO:0030048: actin filament-based movement | 2.47E-03 |
| 40 | GO:0006094: gluconeogenesis | 2.47E-03 |
| 41 | GO:0010223: secondary shoot formation | 2.68E-03 |
| 42 | GO:0010020: chloroplast fission | 2.68E-03 |
| 43 | GO:0009058: biosynthetic process | 2.91E-03 |
| 44 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.11E-03 |
| 45 | GO:0005992: trehalose biosynthetic process | 3.34E-03 |
| 46 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.57E-03 |
| 47 | GO:0016114: terpenoid biosynthetic process | 3.81E-03 |
| 48 | GO:0009269: response to desiccation | 3.81E-03 |
| 49 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.05E-03 |
| 50 | GO:0019748: secondary metabolic process | 4.05E-03 |
| 51 | GO:0006520: cellular amino acid metabolic process | 5.34E-03 |
| 52 | GO:0009658: chloroplast organization | 5.86E-03 |
| 53 | GO:0009556: microsporogenesis | 5.89E-03 |
| 54 | GO:0032502: developmental process | 6.46E-03 |
| 55 | GO:0009630: gravitropism | 6.46E-03 |
| 56 | GO:1901657: glycosyl compound metabolic process | 6.75E-03 |
| 57 | GO:0009567: double fertilization forming a zygote and endosperm | 7.05E-03 |
| 58 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 7.51E-03 |
| 59 | GO:0010027: thylakoid membrane organization | 7.97E-03 |
| 60 | GO:0006906: vesicle fusion | 8.60E-03 |
| 61 | GO:0015995: chlorophyll biosynthetic process | 8.92E-03 |
| 62 | GO:0016311: dephosphorylation | 9.25E-03 |
| 63 | GO:0018298: protein-chromophore linkage | 9.59E-03 |
| 64 | GO:0010218: response to far red light | 1.03E-02 |
| 65 | GO:0006811: ion transport | 1.03E-02 |
| 66 | GO:0016042: lipid catabolic process | 1.04E-02 |
| 67 | GO:0009910: negative regulation of flower development | 1.06E-02 |
| 68 | GO:0009637: response to blue light | 1.13E-02 |
| 69 | GO:0009853: photorespiration | 1.13E-02 |
| 70 | GO:0006887: exocytosis | 1.28E-02 |
| 71 | GO:0006631: fatty acid metabolic process | 1.28E-02 |
| 72 | GO:0000209: protein polyubiquitination | 1.39E-02 |
| 73 | GO:0009644: response to high light intensity | 1.43E-02 |
| 74 | GO:0006364: rRNA processing | 1.67E-02 |
| 75 | GO:0006813: potassium ion transport | 1.67E-02 |
| 76 | GO:0006096: glycolytic process | 1.88E-02 |
| 77 | GO:0035556: intracellular signal transduction | 2.02E-02 |
| 78 | GO:0009553: embryo sac development | 2.10E-02 |
| 79 | GO:0009624: response to nematode | 2.15E-02 |
| 80 | GO:0045893: positive regulation of transcription, DNA-templated | 2.20E-02 |
| 81 | GO:0006413: translational initiation | 3.02E-02 |
| 82 | GO:0010150: leaf senescence | 3.17E-02 |
| 83 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.28E-02 |
| 84 | GO:0006979: response to oxidative stress | 3.89E-02 |
| 85 | GO:0042254: ribosome biogenesis | 4.38E-02 |
| 86 | GO:0006970: response to osmotic stress | 4.56E-02 |
| 87 | GO:0055114: oxidation-reduction process | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 4 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 5 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 6 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 7 | GO:0019172: glyoxalase III activity | 1.44E-04 |
| 8 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 1.44E-04 |
| 9 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.44E-04 |
| 10 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 1.44E-04 |
| 11 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 1.44E-04 |
| 12 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.46E-04 |
| 13 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.46E-04 |
| 14 | GO:0022890: inorganic cation transmembrane transporter activity | 3.57E-04 |
| 15 | GO:0004462: lactoylglutathione lyase activity | 7.40E-04 |
| 16 | GO:0008519: ammonium transmembrane transporter activity | 7.40E-04 |
| 17 | GO:0004332: fructose-bisphosphate aldolase activity | 7.40E-04 |
| 18 | GO:0004629: phospholipase C activity | 7.40E-04 |
| 19 | GO:0004435: phosphatidylinositol phospholipase C activity | 8.82E-04 |
| 20 | GO:0008271: secondary active sulfate transmembrane transporter activity | 1.35E-03 |
| 21 | GO:0016844: strictosidine synthase activity | 1.69E-03 |
| 22 | GO:0015386: potassium:proton antiporter activity | 2.07E-03 |
| 23 | GO:0015116: sulfate transmembrane transporter activity | 2.27E-03 |
| 24 | GO:0016491: oxidoreductase activity | 2.46E-03 |
| 25 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.68E-03 |
| 26 | GO:0003774: motor activity | 2.68E-03 |
| 27 | GO:0031409: pigment binding | 3.11E-03 |
| 28 | GO:0005216: ion channel activity | 3.57E-03 |
| 29 | GO:0015079: potassium ion transmembrane transporter activity | 3.57E-03 |
| 30 | GO:0015299: solute:proton antiporter activity | 5.61E-03 |
| 31 | GO:0016788: hydrolase activity, acting on ester bonds | 5.98E-03 |
| 32 | GO:0016791: phosphatase activity | 7.05E-03 |
| 33 | GO:0016168: chlorophyll binding | 8.28E-03 |
| 34 | GO:0102483: scopolin beta-glucosidase activity | 8.92E-03 |
| 35 | GO:0004871: signal transducer activity | 9.11E-03 |
| 36 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.06E-02 |
| 37 | GO:0003746: translation elongation factor activity | 1.13E-02 |
| 38 | GO:0003993: acid phosphatase activity | 1.17E-02 |
| 39 | GO:0008422: beta-glucosidase activity | 1.20E-02 |
| 40 | GO:0000149: SNARE binding | 1.20E-02 |
| 41 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.20E-02 |
| 42 | GO:0004672: protein kinase activity | 1.33E-02 |
| 43 | GO:0004185: serine-type carboxypeptidase activity | 1.35E-02 |
| 44 | GO:0005484: SNAP receptor activity | 1.35E-02 |
| 45 | GO:0015293: symporter activity | 1.47E-02 |
| 46 | GO:0003777: microtubule motor activity | 1.80E-02 |
| 47 | GO:0031625: ubiquitin protein ligase binding | 1.80E-02 |
| 48 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.93E-02 |
| 49 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.52E-02 |
| 50 | GO:0005525: GTP binding | 3.14E-02 |
| 51 | GO:0003743: translation initiation factor activity | 3.54E-02 |
| 52 | GO:0050660: flavin adenine dinucleotide binding | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.52E-06 |
| 3 | GO:0031361: integral component of thylakoid membrane | 5.94E-05 |
| 4 | GO:0033281: TAT protein transport complex | 2.46E-04 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 2.78E-04 |
| 6 | GO:0009526: plastid envelope | 4.78E-04 |
| 7 | GO:0009517: PSII associated light-harvesting complex II | 4.78E-04 |
| 8 | GO:0009534: chloroplast thylakoid | 7.49E-04 |
| 9 | GO:0031969: chloroplast membrane | 9.98E-04 |
| 10 | GO:0031977: thylakoid lumen | 1.09E-03 |
| 11 | GO:0031901: early endosome membrane | 1.52E-03 |
| 12 | GO:0016459: myosin complex | 1.88E-03 |
| 13 | GO:0010287: plastoglobule | 2.62E-03 |
| 14 | GO:0030095: chloroplast photosystem II | 2.68E-03 |
| 15 | GO:0009543: chloroplast thylakoid lumen | 2.77E-03 |
| 16 | GO:0030076: light-harvesting complex | 2.89E-03 |
| 17 | GO:0009579: thylakoid | 4.18E-03 |
| 18 | GO:0009941: chloroplast envelope | 4.67E-03 |
| 19 | GO:0009522: photosystem I | 5.61E-03 |
| 20 | GO:0005886: plasma membrane | 5.65E-03 |
| 21 | GO:0009523: photosystem II | 5.89E-03 |
| 22 | GO:0031201: SNARE complex | 1.28E-02 |
| 23 | GO:0005887: integral component of plasma membrane | 1.46E-02 |
| 24 | GO:0009570: chloroplast stroma | 2.76E-02 |