co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042352: GDP-L-fucose salvage	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0042793: transcription from plastid promoter	1.59E-05
4	GO:0005980: glycogen catabolic process	8.09E-05
5	GO:0009640: photomorphogenesis	1.53E-04
6	GO:0071452: cellular response to singlet oxygen	1.93E-04
7	GO:0018026: peptidyl-lysine monomethylation	1.93E-04
8	GO:0006508: proteolysis	3.06E-04
9	GO:0030261: chromosome condensation	3.24E-04
10	GO:0009647: skotomorphogenesis	4.66E-04
11	GO:0046739: transport of virus in multicellular host	4.66E-04
12	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.92E-04
13	GO:0048497: maintenance of floral organ identity	7.86E-04
14	GO:0010027: thylakoid membrane organization	8.44E-04
15	GO:0009658: chloroplast organization	1.26E-03
16	GO:0005978: glycogen biosynthetic process	1.54E-03
17	GO:0009642: response to light intensity	1.54E-03
18	GO:0042255: ribosome assembly	1.54E-03
19	GO:0006353: DNA-templated transcription, termination	1.54E-03
20	GO:0006631: fatty acid metabolic process	1.61E-03
21	GO:0010497: plasmodesmata-mediated intercellular transport	1.76E-03
22	GO:0010206: photosystem II repair	1.98E-03
23	GO:1900865: chloroplast RNA modification	2.22E-03
24	GO:0045036: protein targeting to chloroplast	2.46E-03
25	GO:0006949: syncytium formation	2.46E-03
26	GO:0051026: chiasma assembly	2.46E-03
27	GO:0016042: lipid catabolic process	2.61E-03
28	GO:0009793: embryo development ending in seed dormancy	2.79E-03
29	GO:0012501: programmed cell death	2.97E-03
30	GO:0009740: gibberellic acid mediated signaling pathway	3.12E-03
31	GO:2000012: regulation of auxin polar transport	3.24E-03
32	GO:0009266: response to temperature stimulus	3.52E-03
33	GO:0010020: chloroplast fission	3.52E-03
34	GO:0007034: vacuolar transport	3.52E-03
35	GO:0080188: RNA-directed DNA methylation	3.81E-03
36	GO:0090351: seedling development	3.81E-03
37	GO:0080147: root hair cell development	4.40E-03
38	GO:0019953: sexual reproduction	4.70E-03
39	GO:0007017: microtubule-based process	4.70E-03
40	GO:0006633: fatty acid biosynthetic process	5.18E-03
41	GO:0040008: regulation of growth	5.43E-03
42	GO:0010091: trichome branching	6.01E-03
43	GO:0008380: RNA splicing	6.78E-03
44	GO:0009741: response to brassinosteroid	7.06E-03
45	GO:0009791: post-embryonic development	7.79E-03
46	GO:0019252: starch biosynthetic process	7.79E-03
47	GO:0071554: cell wall organization or biogenesis	8.17E-03
48	GO:0009826: unidimensional cell growth	8.47E-03
49	GO:0010583: response to cyclopentenone	8.56E-03
50	GO:0030163: protein catabolic process	8.94E-03
51	GO:0009828: plant-type cell wall loosening	9.34E-03
52	GO:0015995: chlorophyll biosynthetic process	1.19E-02
53	GO:0000160: phosphorelay signal transduction system	1.32E-02
54	GO:0009813: flavonoid biosynthetic process	1.32E-02
55	GO:0006839: mitochondrial transport	1.65E-02
56	GO:0048364: root development	1.69E-02
57	GO:0006897: endocytosis	1.70E-02
58	GO:0009664: plant-type cell wall organization	2.12E-02
59	GO:0009736: cytokinin-activated signaling pathway	2.23E-02
60	GO:0048367: shoot system development	2.57E-02
61	GO:0009620: response to fungus	2.69E-02
62	GO:0009742: brassinosteroid mediated signaling pathway	2.99E-02
63	GO:0009058: biosynthetic process	3.49E-02
64	GO:0009790: embryo development	3.76E-02
65	GO:0006413: translational initiation	4.02E-02
66	GO:0010468: regulation of gene expression	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
2	GO:0050201: fucokinase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
5	GO:0004176: ATP-dependent peptidase activity	8.34E-06
6	GO:0008237: metallopeptidase activity	4.13E-05
7	GO:0008184: glycogen phosphorylase activity	8.09E-05
8	GO:0004645: phosphorylase activity	8.09E-05
9	GO:0009374: biotin binding	8.09E-05
10	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.93E-04
11	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.93E-04
12	GO:0016630: protochlorophyllide reductase activity	1.93E-04
13	GO:0070180: large ribosomal subunit rRNA binding	3.24E-04
14	GO:0070330: aromatase activity	3.24E-04
15	GO:0043169: cation binding	3.24E-04
16	GO:0005504: fatty acid binding	3.24E-04
17	GO:0004335: galactokinase activity	6.21E-04
18	GO:0016279: protein-lysine N-methyltransferase activity	6.21E-04
19	GO:0045430: chalcone isomerase activity	6.21E-04
20	GO:0003989: acetyl-CoA carboxylase activity	7.86E-04
21	GO:0018685: alkane 1-monooxygenase activity	7.86E-04
22	GO:0004556: alpha-amylase activity	9.59E-04
23	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.71E-03
24	GO:0004386: helicase activity	3.60E-03
25	GO:0004190: aspartic-type endopeptidase activity	3.81E-03
26	GO:0008408: 3'-5' exonuclease activity	5.02E-03
27	GO:0003727: single-stranded RNA binding	6.01E-03
28	GO:0004527: exonuclease activity	7.06E-03
29	GO:0051015: actin filament binding	8.94E-03
30	GO:0000156: phosphorelay response regulator activity	8.94E-03
31	GO:0016413: O-acetyltransferase activity	1.02E-02
32	GO:0008233: peptidase activity	1.07E-02
33	GO:0052689: carboxylic ester hydrolase activity	1.21E-02
34	GO:0008236: serine-type peptidase activity	1.23E-02
35	GO:0004222: metalloendopeptidase activity	1.37E-02
36	GO:0043621: protein self-association	1.91E-02
37	GO:0035091: phosphatidylinositol binding	1.91E-02
38	GO:0005198: structural molecule activity	1.96E-02
39	GO:0016298: lipase activity	2.29E-02
40	GO:0003690: double-stranded DNA binding	2.29E-02
41	GO:0016887: ATPase activity	2.51E-02
42	GO:0004650: polygalacturonase activity	2.69E-02
43	GO:0019843: rRNA binding	3.36E-02
44	GO:0016829: lyase activity	3.56E-02
45	GO:0004252: serine-type endopeptidase activity	3.62E-02
46	GO:0030170: pyridoxal phosphate binding	3.62E-02
47	GO:0003743: translation initiation factor activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.58E-07
2	GO:0009534: chloroplast thylakoid	3.17E-05
3	GO:0009507: chloroplast	3.53E-05
4	GO:0000796: condensin complex	8.09E-05
5	GO:0009508: plastid chromosome	1.49E-04
6	GO:0009536: plastid	1.84E-04
7	GO:0009941: chloroplast envelope	2.07E-04
8	GO:0009317: acetyl-CoA carboxylase complex	3.24E-04
9	GO:0042646: plastid nucleoid	4.66E-04
10	GO:0030286: dynein complex	6.21E-04
11	GO:0009295: nucleoid	7.56E-04
12	GO:0000815: ESCRT III complex	1.14E-03
13	GO:0005762: mitochondrial large ribosomal subunit	1.14E-03
14	GO:0005655: nucleolar ribonuclease P complex	1.14E-03
15	GO:0009501: amyloplast	1.54E-03
16	GO:0009570: chloroplast stroma	1.65E-03
17	GO:0042644: chloroplast nucleoid	1.98E-03
18	GO:0005884: actin filament	2.71E-03
19	GO:0090404: pollen tube tip	2.71E-03
20	GO:0009506: plasmodesma	7.58E-03
21	GO:0005622: intracellular	1.16E-02
22	GO:0031977: thylakoid lumen	1.70E-02
23	GO:0005856: cytoskeleton	1.96E-02
24	GO:0009543: chloroplast thylakoid lumen	3.36E-02
25	GO:0005623: cell	3.43E-02
26	GO:0005576: extracellular region	4.66E-02