co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0006642: triglyceride mobilization	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:0015717: triose phosphate transport	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0006849: plasma membrane pyruvate transport	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0032544: plastid translation	1.24E-06
11	GO:0015995: chlorophyll biosynthetic process	6.15E-06
12	GO:0042026: protein refolding	4.39E-05
13	GO:1901259: chloroplast rRNA processing	4.39E-05
14	GO:0009658: chloroplast organization	4.62E-05
15	GO:0009772: photosynthetic electron transport in photosystem II	5.92E-05
16	GO:0010206: photosystem II repair	1.20E-04
17	GO:0006783: heme biosynthetic process	1.20E-04
18	GO:0005980: glycogen catabolic process	1.22E-04
19	GO:0030198: extracellular matrix organization	1.22E-04
20	GO:0007093: mitotic cell cycle checkpoint	1.22E-04
21	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.22E-04
22	GO:0042371: vitamin K biosynthetic process	1.22E-04
23	GO:0043007: maintenance of rDNA	1.22E-04
24	GO:0010028: xanthophyll cycle	1.22E-04
25	GO:0034337: RNA folding	1.22E-04
26	GO:0005991: trehalose metabolic process	1.22E-04
27	GO:0006747: FAD biosynthetic process	1.22E-04
28	GO:0000023: maltose metabolic process	1.22E-04
29	GO:0006782: protoporphyrinogen IX biosynthetic process	1.71E-04
30	GO:0005983: starch catabolic process	2.32E-04
31	GO:0009629: response to gravity	2.82E-04
32	GO:0019388: galactose catabolic process	2.82E-04
33	GO:0007154: cell communication	2.82E-04
34	GO:0090342: regulation of cell aging	2.82E-04
35	GO:0051304: chromosome separation	2.82E-04
36	GO:0016122: xanthophyll metabolic process	2.82E-04
37	GO:0010270: photosystem II oxygen evolving complex assembly	2.82E-04
38	GO:0019253: reductive pentose-phosphate cycle	3.00E-04
39	GO:0009405: pathogenesis	4.65E-04
40	GO:0019563: glycerol catabolic process	4.65E-04
41	GO:0035436: triose phosphate transmembrane transport	4.65E-04
42	GO:0032504: multicellular organism reproduction	4.65E-04
43	GO:0061077: chaperone-mediated protein folding	5.06E-04
44	GO:0007005: mitochondrion organization	5.53E-04
45	GO:0010731: protein glutathionylation	6.66E-04
46	GO:0046739: transport of virus in multicellular host	6.66E-04
47	GO:0009590: detection of gravity	6.66E-04
48	GO:0051085: chaperone mediated protein folding requiring cofactor	6.66E-04
49	GO:0010601: positive regulation of auxin biosynthetic process	6.66E-04
50	GO:0015979: photosynthesis	6.88E-04
51	GO:0006457: protein folding	7.82E-04
52	GO:0015713: phosphoglycerate transport	8.84E-04
53	GO:0015994: chlorophyll metabolic process	8.84E-04
54	GO:0022622: root system development	8.84E-04
55	GO:0019252: starch biosynthetic process	9.36E-04
56	GO:0010236: plastoquinone biosynthetic process	1.12E-03
57	GO:0009790: embryo development	1.18E-03
58	GO:0006828: manganese ion transport	1.37E-03
59	GO:0010190: cytochrome b6f complex assembly	1.37E-03
60	GO:0009643: photosynthetic acclimation	1.37E-03
61	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.37E-03
62	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.37E-03
63	GO:0042372: phylloquinone biosynthetic process	1.64E-03
64	GO:0006458: 'de novo' protein folding	1.64E-03
65	GO:0010310: regulation of hydrogen peroxide metabolic process	1.64E-03
66	GO:0009955: adaxial/abaxial pattern specification	1.64E-03
67	GO:0048437: floral organ development	1.92E-03
68	GO:0032880: regulation of protein localization	1.92E-03
69	GO:0009735: response to cytokinin	2.10E-03
70	GO:0006353: DNA-templated transcription, termination	2.22E-03
71	GO:0070413: trehalose metabolism in response to stress	2.22E-03
72	GO:0009231: riboflavin biosynthetic process	2.22E-03
73	GO:0048564: photosystem I assembly	2.22E-03
74	GO:0005978: glycogen biosynthetic process	2.22E-03
75	GO:0010497: plasmodesmata-mediated intercellular transport	2.54E-03
76	GO:0006631: fatty acid metabolic process	2.76E-03
77	GO:0009409: response to cold	2.89E-03
78	GO:0010205: photoinhibition	3.21E-03
79	GO:0009638: phototropism	3.21E-03
80	GO:0005975: carbohydrate metabolic process	3.54E-03
81	GO:0010629: negative regulation of gene expression	3.57E-03
82	GO:0006415: translational termination	3.94E-03
83	GO:0018119: peptidyl-cysteine S-nitrosylation	3.94E-03
84	GO:0006816: calcium ion transport	3.94E-03
85	GO:0016024: CDP-diacylglycerol biosynthetic process	4.32E-03
86	GO:2000012: regulation of auxin polar transport	4.71E-03
87	GO:0010102: lateral root morphogenesis	4.71E-03
88	GO:0006006: glucose metabolic process	4.71E-03
89	GO:0006094: gluconeogenesis	4.71E-03
90	GO:0006096: glycolytic process	4.74E-03
91	GO:0009266: response to temperature stimulus	5.12E-03
92	GO:0010143: cutin biosynthetic process	5.12E-03
93	GO:0051017: actin filament bundle assembly	6.42E-03
94	GO:0005992: trehalose biosynthetic process	6.42E-03
95	GO:0006418: tRNA aminoacylation for protein translation	6.87E-03
96	GO:0009768: photosynthesis, light harvesting in photosystem I	6.87E-03
97	GO:0006730: one-carbon metabolic process	7.81E-03
98	GO:0016226: iron-sulfur cluster assembly	7.81E-03
99	GO:0006012: galactose metabolic process	8.30E-03
100	GO:0008284: positive regulation of cell proliferation	9.31E-03
101	GO:0016117: carotenoid biosynthetic process	9.31E-03
102	GO:0080022: primary root development	9.83E-03
103	GO:0006412: translation	1.03E-02
104	GO:0009958: positive gravitropism	1.04E-02
105	GO:0010182: sugar mediated signaling pathway	1.04E-02
106	GO:0006814: sodium ion transport	1.09E-02
107	GO:0009556: microsporogenesis	1.15E-02
108	GO:0006508: proteolysis	1.21E-02
109	GO:0030163: protein catabolic process	1.32E-02
110	GO:0010027: thylakoid membrane organization	1.56E-02
111	GO:0009607: response to biotic stimulus	1.62E-02
112	GO:0009627: systemic acquired resistance	1.69E-02
113	GO:0009817: defense response to fungus, incompatible interaction	1.88E-02
114	GO:0048481: plant ovule development	1.88E-02
115	GO:0008219: cell death	1.88E-02
116	GO:0009832: plant-type cell wall biogenesis	1.95E-02
117	GO:0009813: flavonoid biosynthetic process	1.95E-02
118	GO:0048527: lateral root development	2.09E-02
119	GO:0016042: lipid catabolic process	2.73E-02
120	GO:0006855: drug transmembrane transport	2.98E-02
121	GO:0042538: hyperosmotic salinity response	3.14E-02
122	GO:0009585: red, far-red light phototransduction	3.30E-02
123	GO:0015031: protein transport	3.70E-02
124	GO:0048367: shoot system development	3.80E-02
125	GO:0009553: embryo sac development	4.15E-02
126	GO:0009624: response to nematode	4.24E-02
127	GO:0046686: response to cadmium ion	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0051060: pullulanase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0005201: extracellular matrix structural constituent	0.00E+00
10	GO:0005363: maltose transmembrane transporter activity	0.00E+00
11	GO:0010303: limit dextrinase activity	0.00E+00
12	GO:0019843: rRNA binding	7.56E-06
13	GO:0004645: phosphorylase activity	1.22E-04
14	GO:0004807: triose-phosphate isomerase activity	1.22E-04
15	GO:0008184: glycogen phosphorylase activity	1.22E-04
16	GO:0044183: protein binding involved in protein folding	2.00E-04
17	GO:0003919: FMN adenylyltransferase activity	2.82E-04
18	GO:0008967: phosphoglycolate phosphatase activity	2.82E-04
19	GO:0016630: protochlorophyllide reductase activity	2.82E-04
20	GO:0004614: phosphoglucomutase activity	2.82E-04
21	GO:0004618: phosphoglycerate kinase activity	2.82E-04
22	GO:0002161: aminoacyl-tRNA editing activity	4.65E-04
23	GO:0050833: pyruvate transmembrane transporter activity	4.65E-04
24	GO:0005504: fatty acid binding	4.65E-04
25	GO:0090729: toxin activity	4.65E-04
26	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.65E-04
27	GO:0071917: triose-phosphate transmembrane transporter activity	4.65E-04
28	GO:0016149: translation release factor activity, codon specific	6.66E-04
29	GO:0043023: ribosomal large subunit binding	6.66E-04
30	GO:0008508: bile acid:sodium symporter activity	6.66E-04
31	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	6.66E-04
32	GO:0045430: chalcone isomerase activity	8.84E-04
33	GO:0015120: phosphoglycerate transmembrane transporter activity	8.84E-04
34	GO:0004659: prenyltransferase activity	8.84E-04
35	GO:0003959: NADPH dehydrogenase activity	1.12E-03
36	GO:0016791: phosphatase activity	1.20E-03
37	GO:0008237: metallopeptidase activity	1.27E-03
38	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.37E-03
39	GO:0004556: alpha-amylase activity	1.37E-03
40	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.37E-03
41	GO:0004629: phospholipase C activity	1.37E-03
42	GO:0004435: phosphatidylinositol phospholipase C activity	1.64E-03
43	GO:0004222: metalloendopeptidase activity	2.03E-03
44	GO:0004034: aldose 1-epimerase activity	2.22E-03
45	GO:0003747: translation release factor activity	2.87E-03
46	GO:0005384: manganese ion transmembrane transporter activity	3.21E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.48E-03
48	GO:0047372: acylglycerol lipase activity	3.94E-03
49	GO:0000049: tRNA binding	4.32E-03
50	GO:0004089: carbonate dehydratase activity	4.71E-03
51	GO:0015095: magnesium ion transmembrane transporter activity	4.71E-03
52	GO:0008266: poly(U) RNA binding	5.12E-03
53	GO:0008083: growth factor activity	5.12E-03
54	GO:0003735: structural constituent of ribosome	5.68E-03
55	GO:0051082: unfolded protein binding	5.71E-03
56	GO:0031409: pigment binding	5.98E-03
57	GO:0051536: iron-sulfur cluster binding	6.42E-03
58	GO:0005528: FK506 binding	6.42E-03
59	GO:0004176: ATP-dependent peptidase activity	7.34E-03
60	GO:0004252: serine-type endopeptidase activity	7.92E-03
61	GO:0004812: aminoacyl-tRNA ligase activity	9.31E-03
62	GO:0015297: antiporter activity	9.41E-03
63	GO:0016853: isomerase activity	1.09E-02
64	GO:0051015: actin filament binding	1.32E-02
65	GO:0016168: chlorophyll binding	1.62E-02
66	GO:0008236: serine-type peptidase activity	1.82E-02
67	GO:0015238: drug transmembrane transporter activity	1.95E-02
68	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.37E-02
69	GO:0004364: glutathione transferase activity	2.59E-02
70	GO:0005215: transporter activity	3.11E-02
71	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.80E-02
72	GO:0016746: transferase activity, transferring acyl groups	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.02E-33
2	GO:0009570: chloroplast stroma	1.73E-26
3	GO:0009941: chloroplast envelope	2.39E-19
4	GO:0009535: chloroplast thylakoid membrane	2.78E-16
5	GO:0009534: chloroplast thylakoid	1.52E-15
6	GO:0009579: thylakoid	3.63E-14
7	GO:0031969: chloroplast membrane	3.51E-07
8	GO:0009543: chloroplast thylakoid lumen	7.56E-06
9	GO:0031977: thylakoid lumen	1.81E-05
10	GO:0010319: stromule	9.50E-05
11	GO:0009547: plastid ribosome	1.22E-04
12	GO:0009706: chloroplast inner membrane	7.42E-04
13	GO:0048046: apoplast	1.56E-03
14	GO:0009840: chloroplastic endopeptidase Clp complex	1.64E-03
15	GO:0022626: cytosolic ribosome	2.25E-03
16	GO:0005763: mitochondrial small ribosomal subunit	2.87E-03
17	GO:0000311: plastid large ribosomal subunit	4.32E-03
18	GO:0032040: small-subunit processome	4.32E-03
19	GO:0030095: chloroplast photosystem II	5.12E-03
20	GO:0030076: light-harvesting complex	5.54E-03
21	GO:0009654: photosystem II oxygen evolving complex	6.87E-03
22	GO:0015935: small ribosomal subunit	7.34E-03
23	GO:0009532: plastid stroma	7.34E-03
24	GO:0005840: ribosome	7.52E-03
25	GO:0015629: actin cytoskeleton	8.30E-03
26	GO:0009536: plastid	9.55E-03
27	GO:0019898: extrinsic component of membrane	1.15E-02
28	GO:0009707: chloroplast outer membrane	1.88E-02
29	GO:0016020: membrane	2.78E-02
30	GO:0005856: cytoskeleton	2.90E-02
31	GO:0010287: plastoglobule	4.79E-02