GO Enrichment Analysis of Co-expressed Genes with
AT3G63410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 7 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 8 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 9 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 10 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 11 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.10E-08 |
| 12 | GO:0015979: photosynthesis | 8.35E-06 |
| 13 | GO:0009228: thiamine biosynthetic process | 7.90E-05 |
| 14 | GO:0006810: transport | 8.83E-05 |
| 15 | GO:0010114: response to red light | 9.85E-05 |
| 16 | GO:0009791: post-embryonic development | 1.87E-04 |
| 17 | GO:0031998: regulation of fatty acid beta-oxidation | 2.16E-04 |
| 18 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.16E-04 |
| 19 | GO:0006659: phosphatidylserine biosynthetic process | 2.16E-04 |
| 20 | GO:0080093: regulation of photorespiration | 2.16E-04 |
| 21 | GO:0032544: plastid translation | 2.29E-04 |
| 22 | GO:0006098: pentose-phosphate shunt | 2.78E-04 |
| 23 | GO:0010027: thylakoid membrane organization | 3.40E-04 |
| 24 | GO:0009773: photosynthetic electron transport in photosystem I | 4.49E-04 |
| 25 | GO:0019684: photosynthesis, light reaction | 4.49E-04 |
| 26 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.49E-04 |
| 27 | GO:0051645: Golgi localization | 4.81E-04 |
| 28 | GO:0034755: iron ion transmembrane transport | 4.81E-04 |
| 29 | GO:0071457: cellular response to ozone | 4.81E-04 |
| 30 | GO:0060151: peroxisome localization | 4.81E-04 |
| 31 | GO:0006094: gluconeogenesis | 5.83E-04 |
| 32 | GO:0009767: photosynthetic electron transport chain | 5.83E-04 |
| 33 | GO:0010143: cutin biosynthetic process | 6.57E-04 |
| 34 | GO:0051646: mitochondrion localization | 7.83E-04 |
| 35 | GO:0090391: granum assembly | 7.83E-04 |
| 36 | GO:0090436: leaf pavement cell development | 7.83E-04 |
| 37 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.92E-04 |
| 38 | GO:0006166: purine ribonucleoside salvage | 1.12E-03 |
| 39 | GO:0071484: cellular response to light intensity | 1.12E-03 |
| 40 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.12E-03 |
| 41 | GO:0006424: glutamyl-tRNA aminoacylation | 1.12E-03 |
| 42 | GO:0006168: adenine salvage | 1.12E-03 |
| 43 | GO:0006542: glutamine biosynthetic process | 1.48E-03 |
| 44 | GO:0019676: ammonia assimilation cycle | 1.48E-03 |
| 45 | GO:0071486: cellular response to high light intensity | 1.48E-03 |
| 46 | GO:0009765: photosynthesis, light harvesting | 1.48E-03 |
| 47 | GO:0006109: regulation of carbohydrate metabolic process | 1.48E-03 |
| 48 | GO:0015994: chlorophyll metabolic process | 1.48E-03 |
| 49 | GO:0010107: potassium ion import | 1.48E-03 |
| 50 | GO:0006546: glycine catabolic process | 1.48E-03 |
| 51 | GO:0006021: inositol biosynthetic process | 1.48E-03 |
| 52 | GO:0006096: glycolytic process | 1.59E-03 |
| 53 | GO:0055114: oxidation-reduction process | 1.67E-03 |
| 54 | GO:0009735: response to cytokinin | 1.74E-03 |
| 55 | GO:0006097: glyoxylate cycle | 1.89E-03 |
| 56 | GO:0044209: AMP salvage | 1.89E-03 |
| 57 | GO:0006465: signal peptide processing | 1.89E-03 |
| 58 | GO:0071493: cellular response to UV-B | 1.89E-03 |
| 59 | GO:0046907: intracellular transport | 1.89E-03 |
| 60 | GO:0032543: mitochondrial translation | 1.89E-03 |
| 61 | GO:0098719: sodium ion import across plasma membrane | 1.89E-03 |
| 62 | GO:0006564: L-serine biosynthetic process | 1.89E-03 |
| 63 | GO:0000278: mitotic cell cycle | 1.89E-03 |
| 64 | GO:0006751: glutathione catabolic process | 2.33E-03 |
| 65 | GO:0042549: photosystem II stabilization | 2.33E-03 |
| 66 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.33E-03 |
| 67 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.33E-03 |
| 68 | GO:0010190: cytochrome b6f complex assembly | 2.33E-03 |
| 69 | GO:0009955: adaxial/abaxial pattern specification | 2.80E-03 |
| 70 | GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity | 2.80E-03 |
| 71 | GO:1901259: chloroplast rRNA processing | 2.80E-03 |
| 72 | GO:0009769: photosynthesis, light harvesting in photosystem II | 3.30E-03 |
| 73 | GO:0009645: response to low light intensity stimulus | 3.30E-03 |
| 74 | GO:0015995: chlorophyll biosynthetic process | 3.67E-03 |
| 75 | GO:0055075: potassium ion homeostasis | 3.82E-03 |
| 76 | GO:0048564: photosystem I assembly | 3.82E-03 |
| 77 | GO:0018298: protein-chromophore linkage | 4.06E-03 |
| 78 | GO:0017004: cytochrome complex assembly | 4.38E-03 |
| 79 | GO:0071482: cellular response to light stimulus | 4.38E-03 |
| 80 | GO:0009657: plastid organization | 4.38E-03 |
| 81 | GO:0019430: removal of superoxide radicals | 4.38E-03 |
| 82 | GO:0010218: response to far red light | 4.48E-03 |
| 83 | GO:0046686: response to cadmium ion | 4.79E-03 |
| 84 | GO:0009245: lipid A biosynthetic process | 4.95E-03 |
| 85 | GO:0090333: regulation of stomatal closure | 4.95E-03 |
| 86 | GO:0009637: response to blue light | 5.14E-03 |
| 87 | GO:0051453: regulation of intracellular pH | 5.56E-03 |
| 88 | GO:0005982: starch metabolic process | 5.56E-03 |
| 89 | GO:0007346: regulation of mitotic cell cycle | 5.56E-03 |
| 90 | GO:0006949: syncytium formation | 6.18E-03 |
| 91 | GO:0006415: translational termination | 6.84E-03 |
| 92 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.84E-03 |
| 93 | GO:0043085: positive regulation of catalytic activity | 6.84E-03 |
| 94 | GO:0006879: cellular iron ion homeostasis | 6.84E-03 |
| 95 | GO:0009658: chloroplast organization | 7.01E-03 |
| 96 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.51E-03 |
| 97 | GO:0030048: actin filament-based movement | 8.22E-03 |
| 98 | GO:0006108: malate metabolic process | 8.22E-03 |
| 99 | GO:0009664: plant-type cell wall organization | 8.33E-03 |
| 100 | GO:0048467: gynoecium development | 8.94E-03 |
| 101 | GO:0019253: reductive pentose-phosphate cycle | 8.94E-03 |
| 102 | GO:0010207: photosystem II assembly | 8.94E-03 |
| 103 | GO:0051603: proteolysis involved in cellular protein catabolic process | 9.26E-03 |
| 104 | GO:0042023: DNA endoreduplication | 1.05E-02 |
| 105 | GO:0009409: response to cold | 1.19E-02 |
| 106 | GO:0007017: microtubule-based process | 1.21E-02 |
| 107 | GO:0019915: lipid storage | 1.29E-02 |
| 108 | GO:0061077: chaperone-mediated protein folding | 1.29E-02 |
| 109 | GO:0009269: response to desiccation | 1.29E-02 |
| 110 | GO:0016114: terpenoid biosynthetic process | 1.29E-02 |
| 111 | GO:0016226: iron-sulfur cluster assembly | 1.37E-02 |
| 112 | GO:0009686: gibberellin biosynthetic process | 1.46E-02 |
| 113 | GO:0009561: megagametogenesis | 1.55E-02 |
| 114 | GO:0016117: carotenoid biosynthetic process | 1.64E-02 |
| 115 | GO:0051028: mRNA transport | 1.64E-02 |
| 116 | GO:0042335: cuticle development | 1.74E-02 |
| 117 | GO:0010268: brassinosteroid homeostasis | 1.83E-02 |
| 118 | GO:0071472: cellular response to salt stress | 1.83E-02 |
| 119 | GO:0010154: fruit development | 1.83E-02 |
| 120 | GO:0006885: regulation of pH | 1.83E-02 |
| 121 | GO:0006662: glycerol ether metabolic process | 1.83E-02 |
| 122 | GO:0006814: sodium ion transport | 1.93E-02 |
| 123 | GO:0006412: translation | 1.96E-02 |
| 124 | GO:0006633: fatty acid biosynthetic process | 2.01E-02 |
| 125 | GO:0019252: starch biosynthetic process | 2.02E-02 |
| 126 | GO:0008654: phospholipid biosynthetic process | 2.02E-02 |
| 127 | GO:0016132: brassinosteroid biosynthetic process | 2.12E-02 |
| 128 | GO:0010090: trichome morphogenesis | 2.33E-02 |
| 129 | GO:0016125: sterol metabolic process | 2.44E-02 |
| 130 | GO:0009828: plant-type cell wall loosening | 2.44E-02 |
| 131 | GO:0042128: nitrate assimilation | 2.99E-02 |
| 132 | GO:0006974: cellular response to DNA damage stimulus | 2.99E-02 |
| 133 | GO:0016311: dephosphorylation | 3.22E-02 |
| 134 | GO:0016049: cell growth | 3.22E-02 |
| 135 | GO:0009817: defense response to fungus, incompatible interaction | 3.34E-02 |
| 136 | GO:0051301: cell division | 3.46E-02 |
| 137 | GO:0007568: aging | 3.70E-02 |
| 138 | GO:0010119: regulation of stomatal movement | 3.70E-02 |
| 139 | GO:0006099: tricarboxylic acid cycle | 4.07E-02 |
| 140 | GO:0034599: cellular response to oxidative stress | 4.07E-02 |
| 141 | GO:0080167: response to karrikin | 4.23E-02 |
| 142 | GO:0009644: response to high light intensity | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.79E-07 |
| 4 | GO:0009011: starch synthase activity | 3.35E-05 |
| 5 | GO:0004332: fructose-bisphosphate aldolase activity | 7.90E-05 |
| 6 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.10E-04 |
| 7 | GO:0048038: quinone binding | 2.06E-04 |
| 8 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.16E-04 |
| 9 | GO:0051777: ent-kaurenoate oxidase activity | 2.16E-04 |
| 10 | GO:0009374: biotin binding | 2.16E-04 |
| 11 | GO:0004328: formamidase activity | 2.16E-04 |
| 12 | GO:0019843: rRNA binding | 4.32E-04 |
| 13 | GO:0047746: chlorophyllase activity | 4.81E-04 |
| 14 | GO:0004618: phosphoglycerate kinase activity | 4.81E-04 |
| 15 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.81E-04 |
| 16 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.81E-04 |
| 17 | GO:0004047: aminomethyltransferase activity | 4.81E-04 |
| 18 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 4.81E-04 |
| 19 | GO:0033201: alpha-1,4-glucan synthase activity | 4.81E-04 |
| 20 | GO:0004512: inositol-3-phosphate synthase activity | 4.81E-04 |
| 21 | GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity | 4.81E-04 |
| 22 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.81E-04 |
| 23 | GO:0070402: NADPH binding | 7.83E-04 |
| 24 | GO:0004373: glycogen (starch) synthase activity | 7.83E-04 |
| 25 | GO:0050734: hydroxycinnamoyltransferase activity | 7.83E-04 |
| 26 | GO:0004751: ribose-5-phosphate isomerase activity | 7.83E-04 |
| 27 | GO:0031409: pigment binding | 8.16E-04 |
| 28 | GO:0005528: FK506 binding | 9.02E-04 |
| 29 | GO:0016851: magnesium chelatase activity | 1.12E-03 |
| 30 | GO:0003999: adenine phosphoribosyltransferase activity | 1.12E-03 |
| 31 | GO:0016149: translation release factor activity, codon specific | 1.12E-03 |
| 32 | GO:0003883: CTP synthase activity | 1.12E-03 |
| 33 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.12E-03 |
| 34 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.48E-03 |
| 35 | GO:0004356: glutamate-ammonia ligase activity | 1.89E-03 |
| 36 | GO:0003989: acetyl-CoA carboxylase activity | 1.89E-03 |
| 37 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.33E-03 |
| 38 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.33E-03 |
| 39 | GO:0004784: superoxide dismutase activity | 2.33E-03 |
| 40 | GO:0031177: phosphopantetheine binding | 2.33E-03 |
| 41 | GO:0015081: sodium ion transmembrane transporter activity | 2.33E-03 |
| 42 | GO:0016615: malate dehydrogenase activity | 2.33E-03 |
| 43 | GO:0030060: L-malate dehydrogenase activity | 2.80E-03 |
| 44 | GO:0000035: acyl binding | 2.80E-03 |
| 45 | GO:0016168: chlorophyll binding | 3.30E-03 |
| 46 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.82E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 3.82E-03 |
| 48 | GO:0008135: translation factor activity, RNA binding | 4.38E-03 |
| 49 | GO:0003747: translation release factor activity | 4.95E-03 |
| 50 | GO:0003746: translation elongation factor activity | 5.14E-03 |
| 51 | GO:0005381: iron ion transmembrane transporter activity | 5.56E-03 |
| 52 | GO:0005509: calcium ion binding | 6.10E-03 |
| 53 | GO:0008047: enzyme activator activity | 6.18E-03 |
| 54 | GO:0004185: serine-type carboxypeptidase activity | 6.63E-03 |
| 55 | GO:0047372: acylglycerol lipase activity | 6.84E-03 |
| 56 | GO:0015386: potassium:proton antiporter activity | 6.84E-03 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.17E-03 |
| 58 | GO:0008378: galactosyltransferase activity | 7.51E-03 |
| 59 | GO:0003735: structural constituent of ribosome | 7.73E-03 |
| 60 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.74E-03 |
| 61 | GO:0031072: heat shock protein binding | 8.22E-03 |
| 62 | GO:0003725: double-stranded RNA binding | 8.22E-03 |
| 63 | GO:0003774: motor activity | 8.94E-03 |
| 64 | GO:0008266: poly(U) RNA binding | 8.94E-03 |
| 65 | GO:0016740: transferase activity | 1.11E-02 |
| 66 | GO:0051536: iron-sulfur cluster binding | 1.12E-02 |
| 67 | GO:0004857: enzyme inhibitor activity | 1.12E-02 |
| 68 | GO:0043130: ubiquitin binding | 1.12E-02 |
| 69 | GO:0030570: pectate lyase activity | 1.46E-02 |
| 70 | GO:0003924: GTPase activity | 1.51E-02 |
| 71 | GO:0003727: single-stranded RNA binding | 1.55E-02 |
| 72 | GO:0047134: protein-disulfide reductase activity | 1.64E-02 |
| 73 | GO:0009055: electron carrier activity | 1.65E-02 |
| 74 | GO:0004791: thioredoxin-disulfide reductase activity | 1.93E-02 |
| 75 | GO:0019901: protein kinase binding | 2.02E-02 |
| 76 | GO:0015385: sodium:proton antiporter activity | 2.33E-02 |
| 77 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.33E-02 |
| 78 | GO:0016791: phosphatase activity | 2.44E-02 |
| 79 | GO:0008483: transaminase activity | 2.54E-02 |
| 80 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.54E-02 |
| 81 | GO:0005200: structural constituent of cytoskeleton | 2.54E-02 |
| 82 | GO:0016597: amino acid binding | 2.65E-02 |
| 83 | GO:0004721: phosphoprotein phosphatase activity | 3.10E-02 |
| 84 | GO:0016788: hydrolase activity, acting on ester bonds | 3.49E-02 |
| 85 | GO:0016491: oxidoreductase activity | 3.53E-02 |
| 86 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.58E-02 |
| 87 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.70E-02 |
| 88 | GO:0003993: acid phosphatase activity | 4.07E-02 |
| 89 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 4.20E-02 |
| 90 | GO:0042393: histone binding | 4.33E-02 |
| 91 | GO:0052689: carboxylic ester hydrolase activity | 4.67E-02 |
| 92 | GO:0043621: protein self-association | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.50E-35 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.11E-23 |
| 5 | GO:0009570: chloroplast stroma | 3.19E-23 |
| 6 | GO:0009579: thylakoid | 5.62E-21 |
| 7 | GO:0009941: chloroplast envelope | 2.70E-16 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 9.53E-12 |
| 9 | GO:0009534: chloroplast thylakoid | 9.94E-12 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 3.70E-10 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.64E-08 |
| 12 | GO:0031977: thylakoid lumen | 1.89E-07 |
| 13 | GO:0019898: extrinsic component of membrane | 2.43E-07 |
| 14 | GO:0030095: chloroplast photosystem II | 6.41E-07 |
| 15 | GO:0048046: apoplast | 5.04E-06 |
| 16 | GO:0009522: photosystem I | 1.69E-04 |
| 17 | GO:0009547: plastid ribosome | 2.16E-04 |
| 18 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.16E-04 |
| 19 | GO:0005787: signal peptidase complex | 2.16E-04 |
| 20 | GO:0010319: stromule | 2.91E-04 |
| 21 | GO:0010287: plastoglobule | 3.97E-04 |
| 22 | GO:0030076: light-harvesting complex | 7.34E-04 |
| 23 | GO:0010007: magnesium chelatase complex | 7.83E-04 |
| 24 | GO:0009317: acetyl-CoA carboxylase complex | 7.83E-04 |
| 25 | GO:0016020: membrane | 8.03E-04 |
| 26 | GO:0009517: PSII associated light-harvesting complex II | 1.48E-03 |
| 27 | GO:0009523: photosystem II | 2.03E-03 |
| 28 | GO:0005840: ribosome | 2.19E-03 |
| 29 | GO:0009501: amyloplast | 3.82E-03 |
| 30 | GO:0005618: cell wall | 4.04E-03 |
| 31 | GO:0000307: cyclin-dependent protein kinase holoenzyme complex | 4.38E-03 |
| 32 | GO:0009539: photosystem II reaction center | 4.38E-03 |
| 33 | GO:0005763: mitochondrial small ribosomal subunit | 4.95E-03 |
| 34 | GO:0045298: tubulin complex | 4.95E-03 |
| 35 | GO:0016459: myosin complex | 6.18E-03 |
| 36 | GO:0000311: plastid large ribosomal subunit | 7.51E-03 |
| 37 | GO:0022626: cytosolic ribosome | 7.65E-03 |
| 38 | GO:0042651: thylakoid membrane | 1.21E-02 |
| 39 | GO:0009295: nucleoid | 2.54E-02 |
| 40 | GO:0030529: intracellular ribonucleoprotein complex | 2.76E-02 |
| 41 | GO:0019005: SCF ubiquitin ligase complex | 3.34E-02 |
| 42 | GO:0005643: nuclear pore | 3.34E-02 |
| 43 | GO:0005874: microtubule | 4.09E-02 |
| 44 | GO:0031969: chloroplast membrane | 4.23E-02 |