Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018023: peptidyl-lysine trimethylation0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:0006849: plasma membrane pyruvate transport0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0006642: triglyceride mobilization0.00E+00
9GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
10GO:0015805: S-adenosyl-L-methionine transport0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:0015717: triose phosphate transport0.00E+00
14GO:0015995: chlorophyll biosynthetic process2.08E-08
15GO:0009658: chloroplast organization4.66E-07
16GO:0005983: starch catabolic process2.55E-06
17GO:2000012: regulation of auxin polar transport3.45E-06
18GO:0018026: peptidyl-lysine monomethylation7.04E-06
19GO:0046739: transport of virus in multicellular host5.35E-05
20GO:0006633: fatty acid biosynthetic process7.92E-05
21GO:0022622: root system development9.42E-05
22GO:0015979: photosynthesis1.18E-04
23GO:0042793: transcription from plastid promoter2.10E-04
24GO:0032880: regulation of protein localization3.65E-04
25GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.97E-04
26GO:0042759: long-chain fatty acid biosynthetic process3.97E-04
27GO:0042371: vitamin K biosynthetic process3.97E-04
28GO:0043686: co-translational protein modification3.97E-04
29GO:0043007: maintenance of rDNA3.97E-04
30GO:0005991: trehalose metabolic process3.97E-04
31GO:0000023: maltose metabolic process3.97E-04
32GO:0000025: maltose catabolic process3.97E-04
33GO:0005980: glycogen catabolic process3.97E-04
34GO:0030198: extracellular matrix organization3.97E-04
35GO:0010442: guard cell morphogenesis3.97E-04
36GO:0010480: microsporocyte differentiation3.97E-04
37GO:0040008: regulation of growth5.33E-04
38GO:0032544: plastid translation5.59E-04
39GO:0010497: plasmodesmata-mediated intercellular transport5.59E-04
40GO:0019252: starch biosynthetic process6.04E-04
41GO:0006783: heme biosynthetic process6.69E-04
42GO:2000123: positive regulation of stomatal complex development8.60E-04
43GO:0010270: photosystem II oxygen evolving complex assembly8.60E-04
44GO:0010275: NAD(P)H dehydrogenase complex assembly8.60E-04
45GO:0052541: plant-type cell wall cellulose metabolic process8.60E-04
46GO:0009629: response to gravity8.60E-04
47GO:0019388: galactose catabolic process8.60E-04
48GO:0007154: cell communication8.60E-04
49GO:0006423: cysteinyl-tRNA aminoacylation8.60E-04
50GO:0071497: cellular response to freezing8.60E-04
51GO:0006782: protoporphyrinogen IX biosynthetic process9.20E-04
52GO:0010027: thylakoid membrane organization1.05E-03
53GO:0009773: photosynthetic electron transport in photosystem I1.06E-03
54GO:0005975: carbohydrate metabolic process1.25E-03
55GO:0006006: glucose metabolic process1.37E-03
56GO:2001295: malonyl-CoA biosynthetic process1.40E-03
57GO:0032504: multicellular organism reproduction1.40E-03
58GO:0019563: glycerol catabolic process1.40E-03
59GO:0035436: triose phosphate transmembrane transport1.40E-03
60GO:0019253: reductive pentose-phosphate cycle1.54E-03
61GO:0010020: chloroplast fission1.54E-03
62GO:0009734: auxin-activated signaling pathway1.86E-03
63GO:0043572: plastid fission2.02E-03
64GO:0009102: biotin biosynthetic process2.02E-03
65GO:0006241: CTP biosynthetic process2.02E-03
66GO:0009647: skotomorphogenesis2.02E-03
67GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.02E-03
68GO:0010731: protein glutathionylation2.02E-03
69GO:0006165: nucleoside diphosphate phosphorylation2.02E-03
70GO:0006228: UTP biosynthetic process2.02E-03
71GO:0009590: detection of gravity2.02E-03
72GO:0006631: fatty acid metabolic process2.46E-03
73GO:0061077: chaperone-mediated protein folding2.60E-03
74GO:1901141: regulation of lignin biosynthetic process2.71E-03
75GO:0010109: regulation of photosynthesis2.71E-03
76GO:0019464: glycine decarboxylation via glycine cleavage system2.71E-03
77GO:0006183: GTP biosynthetic process2.71E-03
78GO:2000038: regulation of stomatal complex development2.71E-03
79GO:0015713: phosphoglycerate transport2.71E-03
80GO:0016042: lipid catabolic process3.45E-03
81GO:0010236: plastoquinone biosynthetic process3.47E-03
82GO:0031365: N-terminal protein amino acid modification3.47E-03
83GO:0010375: stomatal complex patterning3.47E-03
84GO:0000304: response to singlet oxygen3.47E-03
85GO:0016120: carotene biosynthetic process3.47E-03
86GO:0008284: positive regulation of cell proliferation3.65E-03
87GO:0010197: polar nucleus fusion4.26E-03
88GO:0010182: sugar mediated signaling pathway4.26E-03
89GO:0009958: positive gravitropism4.26E-03
90GO:0009643: photosynthetic acclimation4.29E-03
91GO:0006014: D-ribose metabolic process4.29E-03
92GO:0010405: arabinogalactan protein metabolic process4.29E-03
93GO:0006751: glutathione catabolic process4.29E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.29E-03
95GO:0009959: negative gravitropism4.29E-03
96GO:0000470: maturation of LSU-rRNA4.29E-03
97GO:0006828: manganese ion transport4.29E-03
98GO:0018258: protein O-linked glycosylation via hydroxyproline4.29E-03
99GO:0000741: karyogamy4.29E-03
100GO:0030488: tRNA methylation5.17E-03
101GO:0080086: stamen filament development5.17E-03
102GO:0009955: adaxial/abaxial pattern specification5.17E-03
103GO:0042372: phylloquinone biosynthetic process5.17E-03
104GO:0042026: protein refolding5.17E-03
105GO:0006458: 'de novo' protein folding5.17E-03
106GO:2000033: regulation of seed dormancy process5.17E-03
107GO:1901259: chloroplast rRNA processing5.17E-03
108GO:0030307: positive regulation of cell growth6.11E-03
109GO:0010161: red light signaling pathway6.11E-03
110GO:0009772: photosynthetic electron transport in photosystem II6.11E-03
111GO:0048437: floral organ development6.11E-03
112GO:0010444: guard mother cell differentiation6.11E-03
113GO:0005978: glycogen biosynthetic process7.10E-03
114GO:0006605: protein targeting7.10E-03
115GO:0046620: regulation of organ growth7.10E-03
116GO:0006353: DNA-templated transcription, termination7.10E-03
117GO:0070413: trehalose metabolism in response to stress7.10E-03
118GO:0009607: response to biotic stimulus8.06E-03
119GO:0010099: regulation of photomorphogenesis8.15E-03
120GO:0010100: negative regulation of photomorphogenesis8.15E-03
121GO:0006526: arginine biosynthetic process8.15E-03
122GO:0010206: photosystem II repair9.25E-03
123GO:0046916: cellular transition metal ion homeostasis9.25E-03
124GO:0009638: phototropism1.04E-02
125GO:0043067: regulation of programmed cell death1.04E-02
126GO:0006779: porphyrin-containing compound biosynthetic process1.04E-02
127GO:0009813: flavonoid biosynthetic process1.05E-02
128GO:0048527: lateral root development1.15E-02
129GO:0045036: protein targeting to chloroplast1.16E-02
130GO:0009641: shade avoidance1.16E-02
131GO:0010162: seed dormancy process1.16E-02
132GO:0018119: peptidyl-cysteine S-nitrosylation1.29E-02
133GO:0048229: gametophyte development1.29E-02
134GO:0006816: calcium ion transport1.29E-02
135GO:0009073: aromatic amino acid family biosynthetic process1.29E-02
136GO:0006415: translational termination1.29E-02
137GO:0016024: CDP-diacylglycerol biosynthetic process1.42E-02
138GO:0009733: response to auxin1.47E-02
139GO:0006457: protein folding1.54E-02
140GO:0050826: response to freezing1.55E-02
141GO:0010075: regulation of meristem growth1.55E-02
142GO:0006094: gluconeogenesis1.55E-02
143GO:0010102: lateral root morphogenesis1.55E-02
144GO:0010628: positive regulation of gene expression1.55E-02
145GO:0009640: photomorphogenesis1.64E-02
146GO:0009266: response to temperature stimulus1.69E-02
147GO:0009934: regulation of meristem structural organization1.69E-02
148GO:0010143: cutin biosynthetic process1.69E-02
149GO:0010207: photosystem II assembly1.69E-02
150GO:0006508: proteolysis1.83E-02
151GO:0010030: positive regulation of seed germination1.83E-02
152GO:0006855: drug transmembrane transport1.91E-02
153GO:0006071: glycerol metabolic process1.98E-02
154GO:0010025: wax biosynthetic process1.98E-02
155GO:0009409: response to cold2.10E-02
156GO:0010187: negative regulation of seed germination2.13E-02
157GO:0005992: trehalose biosynthetic process2.13E-02
158GO:0051017: actin filament bundle assembly2.13E-02
159GO:0009585: red, far-red light phototransduction2.21E-02
160GO:0042254: ribosome biogenesis2.25E-02
161GO:0006418: tRNA aminoacylation for protein translation2.29E-02
162GO:0010026: trichome differentiation2.29E-02
163GO:0009768: photosynthesis, light harvesting in photosystem I2.29E-02
164GO:0048511: rhythmic process2.44E-02
165GO:0031408: oxylipin biosynthetic process2.44E-02
166GO:0030245: cellulose catabolic process2.61E-02
167GO:0006096: glycolytic process2.61E-02
168GO:0006730: one-carbon metabolic process2.61E-02
169GO:0006012: galactose metabolic process2.77E-02
170GO:0009686: gibberellin biosynthetic process2.77E-02
171GO:0009411: response to UV2.77E-02
172GO:0009740: gibberellic acid mediated signaling pathway2.96E-02
173GO:0016117: carotenoid biosynthetic process3.12E-02
174GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.12E-02
175GO:0009416: response to light stimulus3.15E-02
176GO:0000413: protein peptidyl-prolyl isomerization3.29E-02
177GO:0048653: anther development3.29E-02
178GO:0042631: cellular response to water deprivation3.29E-02
179GO:0080022: primary root development3.29E-02
180GO:0009742: brassinosteroid mediated signaling pathway3.33E-02
181GO:0006520: cellular amino acid metabolic process3.48E-02
182GO:0006814: sodium ion transport3.66E-02
183GO:0042752: regulation of circadian rhythm3.66E-02
184GO:0009646: response to absence of light3.66E-02
185GO:0048544: recognition of pollen3.66E-02
186GO:0030154: cell differentiation3.78E-02
187GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.04E-02
188GO:0009058: biosynthetic process4.14E-02
189GO:0032502: developmental process4.23E-02
190GO:0010583: response to cyclopentenone4.23E-02
191GO:0010090: trichome morphogenesis4.43E-02
192GO:1901657: glycosyl compound metabolic process4.43E-02
193GO:0009790: embryo development4.58E-02
194GO:0006629: lipid metabolic process4.65E-02
195GO:0007267: cell-cell signaling4.83E-02
RankGO TermAdjusted P value
1GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
2GO:0005201: extracellular matrix structural constituent0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0005363: maltose transmembrane transporter activity0.00E+00
6GO:0010303: limit dextrinase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
10GO:0051060: pullulanase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0047661: amino-acid racemase activity0.00E+00
13GO:0016630: protochlorophyllide reductase activity7.04E-06
14GO:0005504: fatty acid binding2.45E-05
15GO:0019843: rRNA binding4.44E-05
16GO:0016279: protein-lysine N-methyltransferase activity9.42E-05
17GO:0045430: chalcone isomerase activity9.42E-05
18GO:0003989: acetyl-CoA carboxylase activity1.46E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.97E-04
20GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.97E-04
21GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.97E-04
22GO:0050139: nicotinate-N-glucosyltransferase activity3.97E-04
23GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.97E-04
24GO:0004807: triose-phosphate isomerase activity3.97E-04
25GO:0008184: glycogen phosphorylase activity3.97E-04
26GO:0004856: xylulokinase activity3.97E-04
27GO:0004134: 4-alpha-glucanotransferase activity3.97E-04
28GO:0050308: sugar-phosphatase activity3.97E-04
29GO:0004645: phosphorylase activity3.97E-04
30GO:0009374: biotin binding3.97E-04
31GO:0019203: carbohydrate phosphatase activity3.97E-04
32GO:0004853: uroporphyrinogen decarboxylase activity3.97E-04
33GO:0042586: peptide deformylase activity3.97E-04
34GO:0010313: phytochrome binding3.97E-04
35GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.61E-04
36GO:0004618: phosphoglycerate kinase activity8.60E-04
37GO:0003839: gamma-glutamylcyclotransferase activity8.60E-04
38GO:0004817: cysteine-tRNA ligase activity8.60E-04
39GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.60E-04
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.60E-04
41GO:0004614: phosphoglucomutase activity8.60E-04
42GO:0071917: triose-phosphate transmembrane transporter activity1.40E-03
43GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.40E-03
44GO:0015462: ATPase-coupled protein transmembrane transporter activity1.40E-03
45GO:0070330: aromatase activity1.40E-03
46GO:0002161: aminoacyl-tRNA editing activity1.40E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.40E-03
48GO:0050833: pyruvate transmembrane transporter activity1.40E-03
49GO:0004075: biotin carboxylase activity1.40E-03
50GO:0045174: glutathione dehydrogenase (ascorbate) activity1.40E-03
51GO:0008266: poly(U) RNA binding1.54E-03
52GO:0008083: growth factor activity1.54E-03
53GO:0004550: nucleoside diphosphate kinase activity2.02E-03
54GO:0008097: 5S rRNA binding2.02E-03
55GO:0008508: bile acid:sodium symporter activity2.02E-03
56GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.02E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity2.02E-03
58GO:0016149: translation release factor activity, codon specific2.02E-03
59GO:0016851: magnesium chelatase activity2.02E-03
60GO:0005528: FK506 binding2.14E-03
61GO:0015120: phosphoglycerate transmembrane transporter activity2.71E-03
62GO:0004659: prenyltransferase activity2.71E-03
63GO:0003959: NADPH dehydrogenase activity3.47E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor3.47E-03
65GO:0018685: alkane 1-monooxygenase activity3.47E-03
66GO:0001085: RNA polymerase II transcription factor binding4.26E-03
67GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.29E-03
68GO:2001070: starch binding4.29E-03
69GO:1990714: hydroxyproline O-galactosyltransferase activity4.29E-03
70GO:0004556: alpha-amylase activity4.29E-03
71GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.29E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.17E-03
73GO:0004747: ribokinase activity5.17E-03
74GO:0016788: hydrolase activity, acting on ester bonds5.51E-03
75GO:0016791: phosphatase activity6.38E-03
76GO:0008237: metallopeptidase activity6.78E-03
77GO:0008865: fructokinase activity7.10E-03
78GO:0004034: aldose 1-epimerase activity7.10E-03
79GO:0046914: transition metal ion binding8.15E-03
80GO:0008173: RNA methyltransferase activity8.15E-03
81GO:0052689: carboxylic ester hydrolase activity8.64E-03
82GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.25E-03
83GO:0003747: translation release factor activity9.25E-03
84GO:0008889: glycerophosphodiester phosphodiesterase activity9.25E-03
85GO:0005384: manganese ion transmembrane transporter activity1.04E-02
86GO:0015238: drug transmembrane transporter activity1.05E-02
87GO:0004222: metalloendopeptidase activity1.10E-02
88GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.15E-02
89GO:0015297: antiporter activity1.19E-02
90GO:0044183: protein binding involved in protein folding1.29E-02
91GO:0047372: acylglycerol lipase activity1.29E-02
92GO:0000049: tRNA binding1.42E-02
93GO:0009055: electron carrier activity1.49E-02
94GO:0004089: carbonate dehydratase activity1.55E-02
95GO:0015095: magnesium ion transmembrane transporter activity1.55E-02
96GO:0031072: heat shock protein binding1.55E-02
97GO:0003735: structural constituent of ribosome1.74E-02
98GO:0008146: sulfotransferase activity1.83E-02
99GO:0031409: pigment binding1.98E-02
100GO:0046983: protein dimerization activity2.04E-02
101GO:0000287: magnesium ion binding2.14E-02
102GO:0043424: protein histidine kinase binding2.29E-02
103GO:0004176: ATP-dependent peptidase activity2.44E-02
104GO:0033612: receptor serine/threonine kinase binding2.44E-02
105GO:0030570: pectate lyase activity2.77E-02
106GO:0008810: cellulase activity2.77E-02
107GO:0003727: single-stranded RNA binding2.94E-02
108GO:0004812: aminoacyl-tRNA ligase activity3.12E-02
109GO:0005102: receptor binding3.12E-02
110GO:0051082: unfolded protein binding3.14E-02
111GO:0016853: isomerase activity3.66E-02
112GO:0003824: catalytic activity3.83E-02
113GO:0019901: protein kinase binding3.85E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.04E-02
115GO:0004252: serine-type endopeptidase activity4.36E-02
116GO:0030170: pyridoxal phosphate binding4.36E-02
117GO:0051015: actin filament binding4.43E-02
118GO:0000156: phosphorelay response regulator activity4.43E-02
119GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.47E-02
120GO:0003924: GTPase activity4.65E-02
121GO:0030246: carbohydrate binding4.82E-02
122GO:0008483: transaminase activity4.83E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast1.89E-38
3GO:0009570: chloroplast stroma3.02E-38
4GO:0009941: chloroplast envelope1.36E-27
5GO:0009534: chloroplast thylakoid5.91E-17
6GO:0009535: chloroplast thylakoid membrane2.41E-14
7GO:0009579: thylakoid2.28E-12
8GO:0031969: chloroplast membrane9.92E-08
9GO:0009543: chloroplast thylakoid lumen4.11E-06
10GO:0031977: thylakoid lumen4.29E-05
11GO:0046658: anchored component of plasma membrane1.93E-04
12GO:0009547: plastid ribosome3.97E-04
13GO:0000427: plastid-encoded plastid RNA polymerase complex8.60E-04
14GO:0010319: stromule9.06E-04
15GO:0009706: chloroplast inner membrane1.19E-03
16GO:0009508: plastid chromosome1.37E-03
17GO:0009317: acetyl-CoA carboxylase complex1.40E-03
18GO:0019897: extrinsic component of plasma membrane1.40E-03
19GO:0010007: magnesium chelatase complex1.40E-03
20GO:0005960: glycine cleavage complex2.02E-03
21GO:0009536: plastid2.15E-03
22GO:0009654: photosystem II oxygen evolving complex2.36E-03
23GO:0005840: ribosome4.44E-03
24GO:0048046: apoplast4.84E-03
25GO:0019898: extrinsic component of membrane4.91E-03
26GO:0009840: chloroplastic endopeptidase Clp complex5.17E-03
27GO:0009533: chloroplast stromal thylakoid6.11E-03
28GO:0009295: nucleoid6.78E-03
29GO:0009501: amyloplast7.10E-03
30GO:0005667: transcription factor complex8.51E-03
31GO:0005763: mitochondrial small ribosomal subunit9.25E-03
32GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.25E-03
33GO:0009707: chloroplast outer membrane9.96E-03
34GO:0090404: pollen tube tip1.29E-02
35GO:0000311: plastid large ribosomal subunit1.42E-02
36GO:0005615: extracellular space1.46E-02
37GO:0030076: light-harvesting complex1.83E-02
38GO:0043234: protein complex1.98E-02
39GO:0031225: anchored component of membrane2.12E-02
40GO:0009532: plastid stroma2.44E-02
41GO:0015629: actin cytoskeleton2.77E-02
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Gene type



Gene DE type