co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009069: serine family amino acid metabolic process	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0019323: pentose catabolic process	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0070178: D-serine metabolic process	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:0017038: protein import	0.00E+00
10	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
11	GO:0042407: cristae formation	0.00E+00
12	GO:0007638: mechanosensory behavior	0.00E+00
13	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
14	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
15	GO:0018026: peptidyl-lysine monomethylation	8.98E-06
16	GO:0015995: chlorophyll biosynthetic process	1.98E-05
17	GO:0046739: transport of virus in multicellular host	6.67E-05
18	GO:0009658: chloroplast organization	7.70E-05
19	GO:0010027: thylakoid membrane organization	1.72E-04
20	GO:0016120: carotene biosynthetic process	1.80E-04
21	GO:0042793: transcription from plastid promoter	2.55E-04
22	GO:0009733: response to auxin	3.11E-04
23	GO:0030488: tRNA methylation	3.43E-04
24	GO:0042372: phylloquinone biosynthetic process	3.43E-04
25	GO:0010480: microsporocyte differentiation	4.51E-04
26	GO:0042759: long-chain fatty acid biosynthetic process	4.51E-04
27	GO:0042371: vitamin K biosynthetic process	4.51E-04
28	GO:1902458: positive regulation of stomatal opening	4.51E-04
29	GO:0015904: tetracycline transport	4.51E-04
30	GO:0000025: maltose catabolic process	4.51E-04
31	GO:0005980: glycogen catabolic process	4.51E-04
32	GO:0030198: extracellular matrix organization	4.51E-04
33	GO:0070509: calcium ion import	4.51E-04
34	GO:0044262: cellular carbohydrate metabolic process	4.51E-04
35	GO:0010497: plasmodesmata-mediated intercellular transport	6.72E-04
36	GO:0040008: regulation of growth	7.50E-04
37	GO:0009638: phototropism	9.48E-04
38	GO:1900033: negative regulation of trichome patterning	9.73E-04
39	GO:0009786: regulation of asymmetric cell division	9.73E-04
40	GO:0031648: protein destabilization	9.73E-04
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.73E-04
42	GO:0006568: tryptophan metabolic process	9.73E-04
43	GO:2000123: positive regulation of stomatal complex development	9.73E-04
44	GO:0010275: NAD(P)H dehydrogenase complex assembly	9.73E-04
45	GO:0019388: galactose catabolic process	9.73E-04
46	GO:0006423: cysteinyl-tRNA aminoacylation	9.73E-04
47	GO:0009773: photosynthetic electron transport in photosystem I	1.27E-03
48	GO:0005983: starch catabolic process	1.45E-03
49	GO:2001295: malonyl-CoA biosynthetic process	1.58E-03
50	GO:0033591: response to L-ascorbic acid	1.58E-03
51	GO:1902448: positive regulation of shade avoidance	1.58E-03
52	GO:0006006: glucose metabolic process	1.65E-03
53	GO:2000012: regulation of auxin polar transport	1.65E-03
54	GO:0010207: photosystem II assembly	1.86E-03
55	GO:0010020: chloroplast fission	1.86E-03
56	GO:0070588: calcium ion transmembrane transport	2.09E-03
57	GO:0016556: mRNA modification	2.29E-03
58	GO:0043572: plastid fission	2.29E-03
59	GO:0007231: osmosensory signaling pathway	2.29E-03
60	GO:0009102: biotin biosynthetic process	2.29E-03
61	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.29E-03
62	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.29E-03
63	GO:0010731: protein glutathionylation	2.29E-03
64	GO:0009590: detection of gravity	2.29E-03
65	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.72E-03
66	GO:0009734: auxin-activated signaling pathway	2.74E-03
67	GO:0048629: trichome patterning	3.08E-03
68	GO:0010109: regulation of photosynthesis	3.08E-03
69	GO:0019464: glycine decarboxylation via glycine cleavage system	3.08E-03
70	GO:0009765: photosynthesis, light harvesting	3.08E-03
71	GO:0022622: root system development	3.08E-03
72	GO:0033500: carbohydrate homeostasis	3.08E-03
73	GO:2000038: regulation of stomatal complex development	3.08E-03
74	GO:0010236: plastoquinone biosynthetic process	3.95E-03
75	GO:0045038: protein import into chloroplast thylakoid membrane	3.95E-03
76	GO:0048497: maintenance of floral organ identity	3.95E-03
77	GO:0016123: xanthophyll biosynthetic process	3.95E-03
78	GO:0010375: stomatal complex patterning	3.95E-03
79	GO:0000304: response to singlet oxygen	3.95E-03
80	GO:0016042: lipid catabolic process	4.83E-03
81	GO:0006563: L-serine metabolic process	4.89E-03
82	GO:0010405: arabinogalactan protein metabolic process	4.89E-03
83	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.89E-03
84	GO:0009959: negative gravitropism	4.89E-03
85	GO:0009913: epidermal cell differentiation	4.89E-03
86	GO:0006655: phosphatidylglycerol biosynthetic process	4.89E-03
87	GO:0016554: cytidine to uridine editing	4.89E-03
88	GO:0033365: protein localization to organelle	4.89E-03
89	GO:0032973: amino acid export	4.89E-03
90	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.89E-03
91	GO:0000741: karyogamy	4.89E-03
92	GO:0010197: polar nucleus fusion	5.15E-03
93	GO:0010305: leaf vascular tissue pattern formation	5.15E-03
94	GO:0080086: stamen filament development	5.90E-03
95	GO:0071333: cellular response to glucose stimulus	5.90E-03
96	GO:0042026: protein refolding	5.90E-03
97	GO:0006458: 'de novo' protein folding	5.90E-03
98	GO:0017148: negative regulation of translation	5.90E-03
99	GO:0032880: regulation of protein localization	6.98E-03
100	GO:0010161: red light signaling pathway	6.98E-03
101	GO:0048528: post-embryonic root development	6.98E-03
102	GO:0009772: photosynthetic electron transport in photosystem II	6.98E-03
103	GO:0043090: amino acid import	6.98E-03
104	GO:0048437: floral organ development	6.98E-03
105	GO:0010444: guard mother cell differentiation	6.98E-03
106	GO:0009828: plant-type cell wall loosening	7.73E-03
107	GO:2000070: regulation of response to water deprivation	8.12E-03
108	GO:0000105: histidine biosynthetic process	8.12E-03
109	GO:0009231: riboflavin biosynthetic process	8.12E-03
110	GO:0005978: glycogen biosynthetic process	8.12E-03
111	GO:0046620: regulation of organ growth	8.12E-03
112	GO:0006605: protein targeting	8.12E-03
113	GO:0006526: arginine biosynthetic process	9.33E-03
114	GO:0032544: plastid translation	9.33E-03
115	GO:0010099: regulation of photomorphogenesis	9.33E-03
116	GO:0071482: cellular response to light stimulus	9.33E-03
117	GO:0015996: chlorophyll catabolic process	9.33E-03
118	GO:0007186: G-protein coupled receptor signaling pathway	9.33E-03
119	GO:0009657: plastid organization	9.33E-03
120	GO:0010100: negative regulation of photomorphogenesis	9.33E-03
121	GO:0006783: heme biosynthetic process	1.06E-02
122	GO:0000902: cell morphogenesis	1.06E-02
123	GO:0051865: protein autoubiquitination	1.06E-02
124	GO:0080144: amino acid homeostasis	1.06E-02
125	GO:0046916: cellular transition metal ion homeostasis	1.06E-02
126	GO:0048507: meristem development	1.06E-02
127	GO:0043067: regulation of programmed cell death	1.19E-02
128	GO:0006779: porphyrin-containing compound biosynthetic process	1.19E-02
129	GO:1900865: chloroplast RNA modification	1.19E-02
130	GO:0009817: defense response to fungus, incompatible interaction	1.21E-02
131	GO:0006508: proteolysis	1.23E-02
132	GO:0048829: root cap development	1.33E-02
133	GO:0045036: protein targeting to chloroplast	1.33E-02
134	GO:0009641: shade avoidance	1.33E-02
135	GO:0010629: negative regulation of gene expression	1.33E-02
136	GO:0006782: protoporphyrinogen IX biosynthetic process	1.33E-02
137	GO:0009416: response to light stimulus	1.38E-02
138	GO:0018119: peptidyl-cysteine S-nitrosylation	1.47E-02
139	GO:0048229: gametophyte development	1.47E-02
140	GO:0006816: calcium ion transport	1.47E-02
141	GO:0009073: aromatic amino acid family biosynthetic process	1.47E-02
142	GO:0006415: translational termination	1.47E-02
143	GO:0009793: embryo development ending in seed dormancy	1.50E-02
144	GO:0016024: CDP-diacylglycerol biosynthetic process	1.62E-02
145	GO:0045037: protein import into chloroplast stroma	1.62E-02
146	GO:0030001: metal ion transport	1.75E-02
147	GO:0050826: response to freezing	1.78E-02
148	GO:0010075: regulation of meristem growth	1.78E-02
149	GO:0009725: response to hormone	1.78E-02
150	GO:0010588: cotyledon vascular tissue pattern formation	1.78E-02
151	GO:0010102: lateral root morphogenesis	1.78E-02
152	GO:0009785: blue light signaling pathway	1.78E-02
153	GO:0010628: positive regulation of gene expression	1.78E-02
154	GO:0006631: fatty acid metabolic process	1.83E-02
155	GO:0009266: response to temperature stimulus	1.94E-02
156	GO:0009934: regulation of meristem structural organization	1.94E-02
157	GO:0010030: positive regulation of seed germination	2.10E-02
158	GO:0000162: tryptophan biosynthetic process	2.27E-02
159	GO:0010025: wax biosynthetic process	2.27E-02
160	GO:0010187: negative regulation of seed germination	2.44E-02
161	GO:0009664: plant-type cell wall organization	2.50E-02
162	GO:0048511: rhythmic process	2.81E-02
163	GO:0061077: chaperone-mediated protein folding	2.81E-02
164	GO:0031408: oxylipin biosynthetic process	2.81E-02
165	GO:0030245: cellulose catabolic process	2.99E-02
166	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.99E-02
167	GO:0006730: one-carbon metabolic process	2.99E-02
168	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.18E-02
169	GO:0009686: gibberellin biosynthetic process	3.18E-02
170	GO:0048367: shoot system development	3.27E-02
171	GO:0009561: megagametogenesis	3.38E-02
172	GO:0016117: carotenoid biosynthetic process	3.58E-02
173	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.58E-02
174	GO:0008284: positive regulation of cell proliferation	3.58E-02
175	GO:0080022: primary root development	3.78E-02
176	GO:0000413: protein peptidyl-prolyl isomerization	3.78E-02
177	GO:0010087: phloem or xylem histogenesis	3.78E-02
178	GO:0048653: anther development	3.78E-02
179	GO:0042631: cellular response to water deprivation	3.78E-02
180	GO:0006396: RNA processing	3.92E-02
181	GO:0006662: glycerol ether metabolic process	3.99E-02
182	GO:0010182: sugar mediated signaling pathway	3.99E-02
183	GO:0009958: positive gravitropism	3.99E-02
184	GO:0006520: cellular amino acid metabolic process	3.99E-02
185	GO:0009742: brassinosteroid mediated signaling pathway	4.04E-02
186	GO:0042752: regulation of circadian rhythm	4.20E-02
187	GO:0009646: response to absence of light	4.20E-02
188	GO:0048544: recognition of pollen	4.20E-02
189	GO:0015979: photosynthesis	4.30E-02
190	GO:0019252: starch biosynthetic process	4.41E-02
191	GO:0048825: cotyledon development	4.41E-02
192	GO:0045454: cell redox homeostasis	4.55E-02
193	GO:0032502: developmental process	4.85E-02
194	GO:0010583: response to cyclopentenone	4.85E-02
195	GO:0016032: viral process	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
10	GO:0030378: serine racemase activity	0.00E+00
11	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
12	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
13	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
14	GO:0043023: ribosomal large subunit binding	6.67E-05
15	GO:0016279: protein-lysine N-methyltransferase activity	1.17E-04
16	GO:0031072: heat shock protein binding	1.34E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.51E-04
18	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.51E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.51E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	4.51E-04
21	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.51E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.51E-04
23	GO:0008184: glycogen phosphorylase activity	4.51E-04
24	GO:0050308: sugar-phosphatase activity	4.51E-04
25	GO:0004134: 4-alpha-glucanotransferase activity	4.51E-04
26	GO:0004645: phosphorylase activity	4.51E-04
27	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	4.51E-04
28	GO:0019203: carbohydrate phosphatase activity	4.51E-04
29	GO:0010313: phytochrome binding	4.51E-04
30	GO:0004817: cysteine-tRNA ligase activity	9.73E-04
31	GO:0004750: ribulose-phosphate 3-epimerase activity	9.73E-04
32	GO:0016630: protochlorophyllide reductase activity	9.73E-04
33	GO:0008493: tetracycline transporter activity	9.73E-04
34	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	9.73E-04
35	GO:0004614: phosphoglucomutase activity	9.73E-04
36	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.58E-03
37	GO:0016805: dipeptidase activity	1.58E-03
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.58E-03
39	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.58E-03
40	GO:0004180: carboxypeptidase activity	1.58E-03
41	GO:0070330: aromatase activity	1.58E-03
42	GO:0005504: fatty acid binding	1.58E-03
43	GO:0004075: biotin carboxylase activity	1.58E-03
44	GO:0051082: unfolded protein binding	1.59E-03
45	GO:0005262: calcium channel activity	1.65E-03
46	GO:0008266: poly(U) RNA binding	1.86E-03
47	GO:0008097: 5S rRNA binding	2.29E-03
48	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.29E-03
49	GO:0016149: translation release factor activity, codon specific	2.29E-03
50	GO:0016851: magnesium chelatase activity	2.29E-03
51	GO:0005528: FK506 binding	2.58E-03
52	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.08E-03
53	GO:0004659: prenyltransferase activity	3.08E-03
54	GO:0045430: chalcone isomerase activity	3.08E-03
55	GO:0019199: transmembrane receptor protein kinase activity	3.08E-03
56	GO:0004176: ATP-dependent peptidase activity	3.14E-03
57	GO:0003989: acetyl-CoA carboxylase activity	3.95E-03
58	GO:0003959: NADPH dehydrogenase activity	3.95E-03
59	GO:0018685: alkane 1-monooxygenase activity	3.95E-03
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.25E-03
61	GO:2001070: starch binding	4.89E-03
62	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.89E-03
63	GO:0016208: AMP binding	4.89E-03
64	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.90E-03
65	GO:0051920: peroxiredoxin activity	5.90E-03
66	GO:0016209: antioxidant activity	8.12E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	8.12E-03
68	GO:0008237: metallopeptidase activity	8.22E-03
69	GO:0046914: transition metal ion binding	9.33E-03
70	GO:0008173: RNA methyltransferase activity	9.33E-03
71	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.06E-02
72	GO:0003747: translation release factor activity	1.06E-02
73	GO:0019843: rRNA binding	1.07E-02
74	GO:0046983: protein dimerization activity	1.13E-02
75	GO:0052689: carboxylic ester hydrolase activity	1.16E-02
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.21E-02
77	GO:0030170: pyridoxal phosphate binding	1.22E-02
78	GO:0044183: protein binding involved in protein folding	1.47E-02
79	GO:0047372: acylglycerol lipase activity	1.47E-02
80	GO:0003746: translation elongation factor activity	1.54E-02
81	GO:0004089: carbonate dehydratase activity	1.78E-02
82	GO:0015266: protein channel activity	1.78E-02
83	GO:0004364: glutathione transferase activity	1.91E-02
84	GO:0008083: growth factor activity	1.94E-02
85	GO:0009055: electron carrier activity	1.99E-02
86	GO:0008146: sulfotransferase activity	2.10E-02
87	GO:0042802: identical protein binding	2.18E-02
88	GO:0051536: iron-sulfur cluster binding	2.44E-02
89	GO:0043424: protein histidine kinase binding	2.62E-02
90	GO:0016298: lipase activity	2.77E-02
91	GO:0033612: receptor serine/threonine kinase binding	2.81E-02
92	GO:0016788: hydrolase activity, acting on ester bonds	2.86E-02
93	GO:0030570: pectate lyase activity	3.18E-02
94	GO:0008810: cellulase activity	3.18E-02
95	GO:0003727: single-stranded RNA binding	3.38E-02
96	GO:0047134: protein-disulfide reductase activity	3.58E-02
97	GO:0001085: RNA polymerase II transcription factor binding	3.99E-02
98	GO:0004791: thioredoxin-disulfide reductase activity	4.20E-02
99	GO:0004872: receptor activity	4.41E-02
100	GO:0019901: protein kinase binding	4.41E-02
101	GO:0044212: transcription regulatory region DNA binding	4.51E-02
102	GO:0004871: signal transducer activity	4.82E-02
103	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.10E-28
3	GO:0009570: chloroplast stroma	2.06E-27
4	GO:0009941: chloroplast envelope	2.43E-14
5	GO:0009534: chloroplast thylakoid	1.24E-10
6	GO:0009535: chloroplast thylakoid membrane	1.12E-06
7	GO:0009579: thylakoid	5.85E-06
8	GO:0031969: chloroplast membrane	2.17E-05
9	GO:0009508: plastid chromosome	1.34E-04
10	GO:0010319: stromule	1.40E-04
11	GO:0009547: plastid ribosome	4.51E-04
12	GO:0009543: chloroplast thylakoid lumen	4.57E-04
13	GO:0000427: plastid-encoded plastid RNA polymerase complex	9.73E-04
14	GO:0009295: nucleoid	1.15E-03
15	GO:0009528: plastid inner membrane	1.58E-03
16	GO:0010007: magnesium chelatase complex	1.58E-03
17	GO:0030139: endocytic vesicle	1.58E-03
18	GO:0032585: multivesicular body membrane	2.29E-03
19	GO:0005960: glycine cleavage complex	2.29E-03
20	GO:0009527: plastid outer membrane	3.08E-03
21	GO:0031977: thylakoid lumen	3.14E-03
22	GO:0009532: plastid stroma	3.14E-03
23	GO:0046658: anchored component of plasma membrane	5.65E-03
24	GO:0009986: cell surface	6.98E-03
25	GO:0009533: chloroplast stromal thylakoid	6.98E-03
26	GO:0009501: amyloplast	8.12E-03
27	GO:0009536: plastid	9.44E-03
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.06E-02
29	GO:0009707: chloroplast outer membrane	1.21E-02
30	GO:0005886: plasma membrane	1.29E-02
31	GO:0090404: pollen tube tip	1.47E-02
32	GO:0000311: plastid large ribosomal subunit	1.62E-02
33	GO:0043234: protein complex	2.27E-02
34	GO:0009654: photosystem II oxygen evolving complex	2.62E-02
35	GO:0042651: thylakoid membrane	2.62E-02
36	GO:0031225: anchored component of membrane	2.94E-02
37	GO:0015629: actin cytoskeleton	3.18E-02
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.38E-02
39	GO:0019898: extrinsic component of membrane	4.41E-02
40	GO:0005623: cell	4.88E-02