co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0006412: translation	4.54E-13
3	GO:0042254: ribosome biogenesis	6.74E-10
4	GO:0032544: plastid translation	2.00E-09
5	GO:0009735: response to cytokinin	1.38E-05
6	GO:0019252: starch biosynthetic process	2.35E-05
7	GO:0015995: chlorophyll biosynthetic process	6.11E-05
8	GO:0010207: photosystem II assembly	1.65E-04
9	GO:0010270: photosystem II oxygen evolving complex assembly	1.89E-04
10	GO:0019388: galactose catabolic process	1.89E-04
11	GO:0006457: protein folding	2.71E-04
12	GO:0000413: protein peptidyl-prolyl isomerization	4.36E-04
13	GO:0071484: cellular response to light intensity	4.58E-04
14	GO:0051085: chaperone mediated protein folding requiring cofactor	4.58E-04
15	GO:0006241: CTP biosynthetic process	4.58E-04
16	GO:0006165: nucleoside diphosphate phosphorylation	4.58E-04
17	GO:0006228: UTP biosynthetic process	4.58E-04
18	GO:0010731: protein glutathionylation	4.58E-04
19	GO:0009590: detection of gravity	4.58E-04
20	GO:0019464: glycine decarboxylation via glycine cleavage system	6.09E-04
21	GO:0006183: GTP biosynthetic process	6.09E-04
22	GO:0022622: root system development	6.09E-04
23	GO:0006633: fatty acid biosynthetic process	6.34E-04
24	GO:0006461: protein complex assembly	7.72E-04
25	GO:0016120: carotene biosynthetic process	7.72E-04
26	GO:0006751: glutathione catabolic process	9.42E-04
27	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.42E-04
28	GO:0000470: maturation of LSU-rRNA	9.42E-04
29	GO:0006828: manganese ion transport	9.42E-04
30	GO:0010190: cytochrome b6f complex assembly	9.42E-04
31	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	9.42E-04
32	GO:0006014: D-ribose metabolic process	9.42E-04
33	GO:0009817: defense response to fungus, incompatible interaction	1.06E-03
34	GO:0010555: response to mannitol	1.12E-03
35	GO:0042026: protein refolding	1.12E-03
36	GO:0032880: regulation of protein localization	1.31E-03
37	GO:0005978: glycogen biosynthetic process	1.51E-03
38	GO:0009642: response to light intensity	1.51E-03
39	GO:0009657: plastid organization	1.72E-03
40	GO:0015979: photosynthesis	1.89E-03
41	GO:0010206: photosystem II repair	1.95E-03
42	GO:0006783: heme biosynthetic process	1.95E-03
43	GO:0006782: protoporphyrinogen IX biosynthetic process	2.41E-03
44	GO:0006816: calcium ion transport	2.66E-03
45	GO:0006415: translational termination	2.66E-03
46	GO:0005983: starch catabolic process	2.92E-03
47	GO:2000012: regulation of auxin polar transport	3.18E-03
48	GO:0006006: glucose metabolic process	3.18E-03
49	GO:0019344: cysteine biosynthetic process	4.31E-03
50	GO:0000027: ribosomal large subunit assembly	4.31E-03
51	GO:0051017: actin filament bundle assembly	4.31E-03
52	GO:0043622: cortical microtubule organization	4.61E-03
53	GO:0061077: chaperone-mediated protein folding	4.92E-03
54	GO:0035428: hexose transmembrane transport	5.24E-03
55	GO:0007005: mitochondrion organization	5.24E-03
56	GO:0006012: galactose metabolic process	5.56E-03
57	GO:0009411: response to UV	5.56E-03
58	GO:0008284: positive regulation of cell proliferation	6.22E-03
59	GO:0046323: glucose import	6.92E-03
60	GO:0009958: positive gravitropism	6.92E-03
61	GO:0009658: chloroplast organization	8.55E-03
62	GO:0010027: thylakoid membrane organization	1.04E-02
63	GO:0009627: systemic acquired resistance	1.12E-02
64	GO:0008219: cell death	1.25E-02
65	GO:0045454: cell redox homeostasis	1.27E-02
66	GO:0009813: flavonoid biosynthetic process	1.29E-02
67	GO:0042742: defense response to bacterium	1.32E-02
68	GO:0048527: lateral root development	1.38E-02
69	GO:0009853: photorespiration	1.48E-02
70	GO:0016051: carbohydrate biosynthetic process	1.48E-02
71	GO:0006631: fatty acid metabolic process	1.67E-02
72	GO:0042542: response to hydrogen peroxide	1.72E-02
73	GO:0009409: response to cold	1.94E-02
74	GO:0009585: red, far-red light phototransduction	2.19E-02
75	GO:0005975: carbohydrate metabolic process	2.24E-02
76	GO:0006096: glycolytic process	2.46E-02
77	GO:0009740: gibberellic acid mediated signaling pathway	2.69E-02
78	GO:0009790: embryo development	3.68E-02
79	GO:0040008: regulation of growth	4.01E-02
80	GO:0009739: response to gibberellin	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0010303: limit dextrinase activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0051060: pullulanase activity	0.00E+00
10	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
11	GO:0019843: rRNA binding	1.36E-18
12	GO:0003735: structural constituent of ribosome	5.01E-15
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.02E-09
14	GO:0005528: FK506 binding	5.65E-06
15	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	7.90E-05
16	GO:0004853: uroporphyrinogen decarboxylase activity	7.90E-05
17	GO:0003839: gamma-glutamylcyclotransferase activity	1.89E-04
18	GO:0008967: phosphoglycolate phosphatase activity	1.89E-04
19	GO:0016630: protochlorophyllide reductase activity	1.89E-04
20	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.89E-04
21	GO:0004614: phosphoglucomutase activity	1.89E-04
22	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.17E-04
23	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.17E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	3.17E-04
25	GO:0005504: fatty acid binding	3.17E-04
26	GO:0045174: glutathione dehydrogenase (ascorbate) activity	3.17E-04
27	GO:0008097: 5S rRNA binding	4.58E-04
28	GO:0004375: glycine dehydrogenase (decarboxylating) activity	4.58E-04
29	GO:0016149: translation release factor activity, codon specific	4.58E-04
30	GO:0004550: nucleoside diphosphate kinase activity	4.58E-04
31	GO:0043023: ribosomal large subunit binding	4.58E-04
32	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	6.09E-04
33	GO:0045430: chalcone isomerase activity	6.09E-04
34	GO:0003959: NADPH dehydrogenase activity	7.72E-04
35	GO:0004709: MAP kinase kinase kinase activity	9.42E-04
36	GO:0004556: alpha-amylase activity	9.42E-04
37	GO:0051920: peroxiredoxin activity	1.12E-03
38	GO:0004747: ribokinase activity	1.12E-03
39	GO:0016209: antioxidant activity	1.51E-03
40	GO:0004034: aldose 1-epimerase activity	1.51E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	1.51E-03
42	GO:0008865: fructokinase activity	1.51E-03
43	GO:0003747: translation release factor activity	1.95E-03
44	GO:0005384: manganese ion transmembrane transporter activity	2.18E-03
45	GO:0047617: acyl-CoA hydrolase activity	2.18E-03
46	GO:0044183: protein binding involved in protein folding	2.66E-03
47	GO:0015095: magnesium ion transmembrane transporter activity	3.18E-03
48	GO:0031072: heat shock protein binding	3.18E-03
49	GO:0051082: unfolded protein binding	3.21E-03
50	GO:0008266: poly(U) RNA binding	3.45E-03
51	GO:0008083: growth factor activity	3.45E-03
52	GO:0003887: DNA-directed DNA polymerase activity	4.02E-03
53	GO:0016853: isomerase activity	7.28E-03
54	GO:0005355: glucose transmembrane transporter activity	7.28E-03
55	GO:0051015: actin filament binding	8.77E-03
56	GO:0003684: damaged DNA binding	9.16E-03
57	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.56E-03
58	GO:0008237: metallopeptidase activity	9.56E-03
59	GO:0004222: metalloendopeptidase activity	1.34E-02
60	GO:0004364: glutathione transferase activity	1.72E-02
61	GO:0016491: oxidoreductase activity	1.87E-02
62	GO:0015144: carbohydrate transmembrane transporter activity	3.75E-02
63	GO:0005507: copper ion binding	3.96E-02
64	GO:0005351: sugar:proton symporter activity	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0005835: fatty acid synthase complex	0.00E+00
3	GO:0009507: chloroplast	7.29E-48
4	GO:0009570: chloroplast stroma	1.36E-43
5	GO:0009941: chloroplast envelope	2.27E-31
6	GO:0009579: thylakoid	9.89E-21
7	GO:0009535: chloroplast thylakoid membrane	3.59E-20
8	GO:0031977: thylakoid lumen	4.73E-15
9	GO:0005840: ribosome	2.85E-14
10	GO:0009543: chloroplast thylakoid lumen	4.79E-13
11	GO:0009534: chloroplast thylakoid	3.75E-10
12	GO:0031969: chloroplast membrane	1.97E-05
13	GO:0010319: stromule	3.95E-05
14	GO:0009547: plastid ribosome	7.90E-05
15	GO:0022626: cytosolic ribosome	1.50E-04
16	GO:0030095: chloroplast photosystem II	1.65E-04
17	GO:0005960: glycine cleavage complex	4.58E-04
18	GO:0009536: plastid	8.75E-04
19	GO:0015934: large ribosomal subunit	1.21E-03
20	GO:0009533: chloroplast stromal thylakoid	1.31E-03
21	GO:0048046: apoplast	1.60E-03
22	GO:0022625: cytosolic large ribosomal subunit	1.70E-03
23	GO:0016020: membrane	2.14E-03
24	GO:0000311: plastid large ribosomal subunit	2.92E-03
25	GO:0000312: plastid small ribosomal subunit	3.45E-03
26	GO:0009654: photosystem II oxygen evolving complex	4.61E-03
27	GO:0015935: small ribosomal subunit	4.92E-03
28	GO:0015629: actin cytoskeleton	5.56E-03
29	GO:0019898: extrinsic component of membrane	7.64E-03
30	GO:0009523: photosystem II	7.64E-03
31	GO:0005856: cytoskeleton	1.92E-02
32	GO:0009706: chloroplast inner membrane	2.81E-02
33	GO:0005615: extracellular space	4.49E-02