co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0070125: mitochondrial translational elongation	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0009733: response to auxin	1.40E-06
8	GO:0046620: regulation of organ growth	2.76E-05
9	GO:0009686: gibberellin biosynthetic process	4.18E-05
10	GO:0048629: trichome patterning	1.37E-04
11	GO:0006351: transcription, DNA-templated	1.82E-04
12	GO:0009734: auxin-activated signaling pathway	3.08E-04
13	GO:0010480: microsporocyte differentiation	4.98E-04
14	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.23E-04
15	GO:0080005: photosystem stoichiometry adjustment	1.07E-03
16	GO:0061062: regulation of nematode larval development	1.07E-03
17	GO:1900033: negative regulation of trichome patterning	1.07E-03
18	GO:0009786: regulation of asymmetric cell division	1.07E-03
19	GO:0031648: protein destabilization	1.07E-03
20	GO:2000123: positive regulation of stomatal complex development	1.07E-03
21	GO:0009739: response to gibberellin	1.29E-03
22	GO:0006355: regulation of transcription, DNA-templated	1.35E-03
23	GO:0048575: short-day photoperiodism, flowering	1.75E-03
24	GO:0045910: negative regulation of DNA recombination	1.75E-03
25	GO:0090506: axillary shoot meristem initiation	1.75E-03
26	GO:1902448: positive regulation of shade avoidance	1.75E-03
27	GO:0009887: animal organ morphogenesis	2.16E-03
28	GO:0007276: gamete generation	2.54E-03
29	GO:0010321: regulation of vegetative phase change	2.54E-03
30	GO:0006863: purine nucleobase transport	2.70E-03
31	GO:2000038: regulation of stomatal complex development	3.42E-03
32	GO:0042991: transcription factor import into nucleus	3.42E-03
33	GO:0009755: hormone-mediated signaling pathway	3.42E-03
34	GO:0009765: photosynthesis, light harvesting	3.42E-03
35	GO:0009926: auxin polar transport	4.23E-03
36	GO:0016120: carotene biosynthetic process	4.38E-03
37	GO:0045487: gibberellin catabolic process	4.38E-03
38	GO:0048497: maintenance of floral organ identity	4.38E-03
39	GO:0009107: lipoate biosynthetic process	4.38E-03
40	GO:0016123: xanthophyll biosynthetic process	4.38E-03
41	GO:0010438: cellular response to sulfur starvation	4.38E-03
42	GO:0010375: stomatal complex patterning	4.38E-03
43	GO:0010358: leaf shaping	5.43E-03
44	GO:0016554: cytidine to uridine editing	5.43E-03
45	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.43E-03
46	GO:0009913: epidermal cell differentiation	5.43E-03
47	GO:1902456: regulation of stomatal opening	5.43E-03
48	GO:0003006: developmental process involved in reproduction	5.43E-03
49	GO:0010405: arabinogalactan protein metabolic process	5.43E-03
50	GO:0009664: plant-type cell wall organization	5.65E-03
51	GO:0031930: mitochondria-nucleus signaling pathway	6.56E-03
52	GO:0030488: tRNA methylation	6.56E-03
53	GO:0048825: cotyledon development	6.92E-03
54	GO:0071554: cell wall organization or biogenesis	7.41E-03
55	GO:0048437: floral organ development	7.76E-03
56	GO:0010098: suspensor development	7.76E-03
57	GO:0015693: magnesium ion transport	7.76E-03
58	GO:0030497: fatty acid elongation	7.76E-03
59	GO:0010583: response to cyclopentenone	7.92E-03
60	GO:0009826: unidimensional cell growth	8.51E-03
61	GO:0009740: gibberellic acid mediated signaling pathway	9.00E-03
62	GO:0009828: plant-type cell wall loosening	9.00E-03
63	GO:0009567: double fertilization forming a zygote and endosperm	9.00E-03
64	GO:0009819: drought recovery	9.03E-03
65	GO:0042255: ribosome assembly	9.03E-03
66	GO:0006353: DNA-templated transcription, termination	9.03E-03
67	GO:0006402: mRNA catabolic process	9.03E-03
68	GO:0010439: regulation of glucosinolate biosynthetic process	9.03E-03
69	GO:0009704: de-etiolation	9.03E-03
70	GO:2000070: regulation of response to water deprivation	9.03E-03
71	GO:0010492: maintenance of shoot apical meristem identity	9.03E-03
72	GO:0048366: leaf development	1.16E-02
73	GO:0048507: meristem development	1.18E-02
74	GO:0051865: protein autoubiquitination	1.18E-02
75	GO:0048589: developmental growth	1.18E-02
76	GO:0000902: cell morphogenesis	1.18E-02
77	GO:0048573: photoperiodism, flowering	1.27E-02
78	GO:1900865: chloroplast RNA modification	1.33E-02
79	GO:0009638: phototropism	1.33E-02
80	GO:0006779: porphyrin-containing compound biosynthetic process	1.33E-02
81	GO:0016311: dephosphorylation	1.34E-02
82	GO:0006782: protoporphyrinogen IX biosynthetic process	1.48E-02
83	GO:0048829: root cap development	1.48E-02
84	GO:0009641: shade avoidance	1.48E-02
85	GO:0006298: mismatch repair	1.48E-02
86	GO:0006949: syncytium formation	1.48E-02
87	GO:0009908: flower development	1.51E-02
88	GO:0009682: induced systemic resistance	1.64E-02
89	GO:0008285: negative regulation of cell proliferation	1.64E-02
90	GO:0009750: response to fructose	1.64E-02
91	GO:0048229: gametophyte development	1.64E-02
92	GO:0007165: signal transduction	1.67E-02
93	GO:0045892: negative regulation of transcription, DNA-templated	1.68E-02
94	GO:0016567: protein ubiquitination	1.75E-02
95	GO:0009867: jasmonic acid mediated signaling pathway	1.79E-02
96	GO:0010582: floral meristem determinacy	1.81E-02
97	GO:0010152: pollen maturation	1.81E-02
98	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.81E-02
99	GO:0012501: programmed cell death	1.81E-02
100	GO:0040008: regulation of growth	1.84E-02
101	GO:0010588: cotyledon vascular tissue pattern formation	1.98E-02
102	GO:0010102: lateral root morphogenesis	1.98E-02
103	GO:0009785: blue light signaling pathway	1.98E-02
104	GO:0010628: positive regulation of gene expression	1.98E-02
105	GO:2000028: regulation of photoperiodism, flowering	1.98E-02
106	GO:0010075: regulation of meristem growth	1.98E-02
107	GO:0009767: photosynthetic electron transport chain	1.98E-02
108	GO:0009793: embryo development ending in seed dormancy	2.11E-02
109	GO:0016042: lipid catabolic process	2.15E-02
110	GO:0010020: chloroplast fission	2.16E-02
111	GO:0010207: photosystem II assembly	2.16E-02
112	GO:0010223: secondary shoot formation	2.16E-02
113	GO:0009934: regulation of meristem structural organization	2.16E-02
114	GO:0006302: double-strand break repair	2.16E-02
115	GO:0048768: root hair cell tip growth	2.16E-02
116	GO:0048467: gynoecium development	2.16E-02
117	GO:0071555: cell wall organization	2.27E-02
118	GO:0006470: protein dephosphorylation	2.31E-02
119	GO:0090351: seedling development	2.34E-02
120	GO:0048364: root development	2.39E-02
121	GO:0042546: cell wall biogenesis	2.41E-02
122	GO:0009753: response to jasmonic acid	2.49E-02
123	GO:0005992: trehalose biosynthetic process	2.72E-02
124	GO:0019953: sexual reproduction	2.92E-02
125	GO:0009736: cytokinin-activated signaling pathway	3.12E-02
126	GO:0051321: meiotic cell cycle	3.13E-02
127	GO:0016114: terpenoid biosynthetic process	3.13E-02
128	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.33E-02
129	GO:0009658: chloroplast organization	3.37E-02
130	GO:0071215: cellular response to abscisic acid stimulus	3.55E-02
131	GO:0010082: regulation of root meristem growth	3.55E-02
132	GO:0009294: DNA mediated transformation	3.55E-02
133	GO:0001944: vasculature development	3.55E-02
134	GO:0009625: response to insect	3.55E-02
135	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.55E-02
136	GO:0048443: stamen development	3.77E-02
137	GO:0045492: xylan biosynthetic process	3.77E-02
138	GO:0006284: base-excision repair	3.77E-02
139	GO:0042127: regulation of cell proliferation	3.77E-02
140	GO:0048367: shoot system development	3.80E-02
141	GO:0016117: carotenoid biosynthetic process	3.99E-02
142	GO:0009723: response to ethylene	4.04E-02
143	GO:0000271: polysaccharide biosynthetic process	4.21E-02
144	GO:0080022: primary root development	4.21E-02
145	GO:0010087: phloem or xylem histogenesis	4.21E-02
146	GO:0010118: stomatal movement	4.21E-02
147	GO:0048653: anther development	4.21E-02
148	GO:0006468: protein phosphorylation	4.23E-02
149	GO:0045489: pectin biosynthetic process	4.44E-02
150	GO:0010305: leaf vascular tissue pattern formation	4.44E-02
151	GO:0009958: positive gravitropism	4.44E-02
152	GO:0010182: sugar mediated signaling pathway	4.44E-02
153	GO:0009741: response to brassinosteroid	4.44E-02
154	GO:0010268: brassinosteroid homeostasis	4.44E-02
155	GO:0009960: endosperm development	4.44E-02
156	GO:0007018: microtubule-based movement	4.68E-02
157	GO:0009749: response to glucose	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
6	GO:0008805: carbon-monoxide oxygenase activity	1.09E-05
7	GO:0001872: (1->3)-beta-D-glucan binding	7.91E-05
8	GO:0010012: steroid 22-alpha hydroxylase activity	4.98E-04
9	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.98E-04
10	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	4.98E-04
11	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.98E-04
12	GO:0005227: calcium activated cation channel activity	4.98E-04
13	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.73E-04
14	GO:0017118: lipoyltransferase activity	1.07E-03
15	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.07E-03
16	GO:0016415: octanoyltransferase activity	1.07E-03
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.07E-03
18	GO:0043565: sequence-specific DNA binding	1.30E-03
19	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.75E-03
20	GO:0045544: gibberellin 20-oxidase activity	2.54E-03
21	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.54E-03
22	GO:0005345: purine nucleobase transmembrane transporter activity	3.31E-03
23	GO:0019199: transmembrane receptor protein kinase activity	3.42E-03
24	GO:0010011: auxin binding	3.42E-03
25	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.42E-03
26	GO:0033612: receptor serine/threonine kinase binding	3.64E-03
27	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.38E-03
28	GO:0008725: DNA-3-methyladenine glycosylase activity	4.38E-03
29	GO:0043621: protein self-association	4.67E-03
30	GO:0003727: single-stranded RNA binding	4.74E-03
31	GO:0004722: protein serine/threonine phosphatase activity	5.39E-03
32	GO:0030983: mismatched DNA binding	5.43E-03
33	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.43E-03
34	GO:0004709: MAP kinase kinase kinase activity	5.43E-03
35	GO:0003677: DNA binding	6.50E-03
36	GO:0016832: aldehyde-lyase activity	6.56E-03
37	GO:0051753: mannan synthase activity	6.56E-03
38	GO:0003777: microtubule motor activity	7.05E-03
39	GO:0004519: endonuclease activity	7.67E-03
40	GO:0004518: nuclease activity	7.92E-03
41	GO:0016413: O-acetyltransferase activity	1.02E-02
42	GO:0030247: polysaccharide binding	1.27E-02
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.34E-02
44	GO:0004805: trehalose-phosphatase activity	1.48E-02
45	GO:0004871: signal transducer activity	1.76E-02
46	GO:0004672: protein kinase activity	1.90E-02
47	GO:0003725: double-stranded RNA binding	1.98E-02
48	GO:0015095: magnesium ion transmembrane transporter activity	1.98E-02
49	GO:0044212: transcription regulatory region DNA binding	2.27E-02
50	GO:0008146: sulfotransferase activity	2.34E-02
51	GO:0008061: chitin binding	2.34E-02
52	GO:0003712: transcription cofactor activity	2.34E-02
53	GO:0004190: aspartic-type endopeptidase activity	2.34E-02
54	GO:0009055: electron carrier activity	2.49E-02
55	GO:0004674: protein serine/threonine kinase activity	2.67E-02
56	GO:0008134: transcription factor binding	2.72E-02
57	GO:0051536: iron-sulfur cluster binding	2.72E-02
58	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.86E-02
59	GO:0003964: RNA-directed DNA polymerase activity	3.13E-02
60	GO:0008408: 3'-5' exonuclease activity	3.13E-02
61	GO:0010333: terpene synthase activity	3.13E-02
62	GO:0003690: double-stranded DNA binding	3.23E-02
63	GO:0016298: lipase activity	3.23E-02
64	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.33E-02
65	GO:0016301: kinase activity	3.40E-02
66	GO:0005199: structural constituent of cell wall	4.44E-02
67	GO:0015035: protein disulfide oxidoreductase activity	4.55E-02
68	GO:0016853: isomerase activity	4.68E-02
69	GO:0019901: protein kinase binding	4.91E-02
70	GO:0052689: carboxylic ester hydrolase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	4.98E-04
3	GO:0031357: integral component of chloroplast inner membrane	1.07E-03
4	GO:0030870: Mre11 complex	1.07E-03
5	GO:0008287: protein serine/threonine phosphatase complex	1.75E-03
6	GO:0030139: endocytic vesicle	1.75E-03
7	GO:0032585: multivesicular body membrane	2.54E-03
8	GO:0009531: secondary cell wall	2.54E-03
9	GO:0000795: synaptonemal complex	4.38E-03
10	GO:0009986: cell surface	7.76E-03
11	GO:0009508: plastid chromosome	1.98E-02
12	GO:0030095: chloroplast photosystem II	2.16E-02
13	GO:0009941: chloroplast envelope	2.38E-02
14	GO:0005875: microtubule associated complex	2.53E-02
15	GO:0046658: anchored component of plasma membrane	2.78E-02
16	GO:0009654: photosystem II oxygen evolving complex	2.92E-02
17	GO:0009532: plastid stroma	3.13E-02
18	GO:0005886: plasma membrane	3.35E-02
19	GO:0015629: actin cytoskeleton	3.55E-02
20	GO:0005871: kinesin complex	3.99E-02
21	GO:0009504: cell plate	4.91E-02
22	GO:0019898: extrinsic component of membrane	4.91E-02