Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G62260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
2GO:1902001: fatty acid transmembrane transport0.00E+00
3GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
4GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
5GO:0009312: oligosaccharide biosynthetic process0.00E+00
6GO:0032515: negative regulation of phosphoprotein phosphatase activity0.00E+00
7GO:0046865: terpenoid transport0.00E+00
8GO:0010324: membrane invagination0.00E+00
9GO:0010055: atrichoblast differentiation0.00E+00
10GO:0071456: cellular response to hypoxia8.72E-07
11GO:0010112: regulation of systemic acquired resistance4.01E-05
12GO:0009751: response to salicylic acid6.67E-05
13GO:0010200: response to chitin1.40E-04
14GO:0009643: photosynthetic acclimation2.48E-04
15GO:0031930: mitochondria-nucleus signaling pathway3.33E-04
16GO:0015031: protein transport4.15E-04
17GO:0015760: glucose-6-phosphate transport4.43E-04
18GO:0043547: positive regulation of GTPase activity4.43E-04
19GO:1990641: response to iron ion starvation4.43E-04
20GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.43E-04
21GO:0033306: phytol metabolic process4.43E-04
22GO:0050691: regulation of defense response to virus by host4.43E-04
23GO:1902065: response to L-glutamate4.43E-04
24GO:0032491: detection of molecule of fungal origin4.43E-04
25GO:0009968: negative regulation of signal transduction4.43E-04
26GO:1990542: mitochondrial transmembrane transport4.43E-04
27GO:0032107: regulation of response to nutrient levels4.43E-04
28GO:0051707: response to other organism5.68E-04
29GO:0010204: defense response signaling pathway, resistance gene-independent6.55E-04
30GO:0010208: pollen wall assembly6.55E-04
31GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.23E-04
32GO:0055088: lipid homeostasis9.56E-04
33GO:0009812: flavonoid metabolic process9.56E-04
34GO:0009727: detection of ethylene stimulus9.56E-04
35GO:0015908: fatty acid transport9.56E-04
36GO:0002240: response to molecule of oomycetes origin9.56E-04
37GO:0006101: citrate metabolic process9.56E-04
38GO:0044419: interspecies interaction between organisms9.56E-04
39GO:0015865: purine nucleotide transport9.56E-04
40GO:0015712: hexose phosphate transport9.56E-04
41GO:0051258: protein polymerization9.56E-04
42GO:0071668: plant-type cell wall assembly9.56E-04
43GO:0080183: response to photooxidative stress9.56E-04
44GO:0010155: regulation of proton transport9.56E-04
45GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.56E-04
46GO:0080181: lateral root branching9.56E-04
47GO:0015692: lead ion transport1.56E-03
48GO:0052546: cell wall pectin metabolic process1.56E-03
49GO:0015695: organic cation transport1.56E-03
50GO:0015714: phosphoenolpyruvate transport1.56E-03
51GO:0080168: abscisic acid transport1.56E-03
52GO:0006954: inflammatory response1.56E-03
53GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.56E-03
54GO:0034051: negative regulation of plant-type hypersensitive response1.56E-03
55GO:0080163: regulation of protein serine/threonine phosphatase activity1.56E-03
56GO:0035436: triose phosphate transmembrane transport1.56E-03
57GO:0045836: positive regulation of meiotic nuclear division1.56E-03
58GO:0006065: UDP-glucuronate biosynthetic process1.56E-03
59GO:0015783: GDP-fucose transport1.56E-03
60GO:0009737: response to abscisic acid1.76E-03
61GO:0002237: response to molecule of bacterial origin1.81E-03
62GO:0009901: anther dehiscence2.03E-03
63GO:0046902: regulation of mitochondrial membrane permeability2.25E-03
64GO:0010731: protein glutathionylation2.25E-03
65GO:0015696: ammonium transport2.25E-03
66GO:0071323: cellular response to chitin2.25E-03
67GO:0055070: copper ion homeostasis2.25E-03
68GO:0010116: positive regulation of abscisic acid biosynthetic process2.25E-03
69GO:0009863: salicylic acid mediated signaling pathway2.52E-03
70GO:0072488: ammonium transmembrane transport3.03E-03
71GO:0033358: UDP-L-arabinose biosynthetic process3.03E-03
72GO:0022622: root system development3.03E-03
73GO:0015713: phosphoglycerate transport3.03E-03
74GO:0010109: regulation of photosynthesis3.03E-03
75GO:0045227: capsule polysaccharide biosynthetic process3.03E-03
76GO:0006012: galactose metabolic process3.65E-03
77GO:0009247: glycolipid biosynthetic process3.88E-03
78GO:0045927: positive regulation of growth3.88E-03
79GO:0034052: positive regulation of plant-type hypersensitive response3.88E-03
80GO:0030041: actin filament polymerization3.88E-03
81GO:0006097: glyoxylate cycle3.88E-03
82GO:0009229: thiamine diphosphate biosynthetic process3.88E-03
83GO:0009636: response to toxic substance3.91E-03
84GO:0009306: protein secretion3.97E-03
85GO:0031347: regulation of defense response4.30E-03
86GO:0007166: cell surface receptor signaling pathway4.33E-03
87GO:0042391: regulation of membrane potential4.65E-03
88GO:0048317: seed morphogenesis4.80E-03
89GO:0045040: protein import into mitochondrial outer membrane4.80E-03
90GO:0033365: protein localization to organelle4.80E-03
91GO:0010337: regulation of salicylic acid metabolic process4.80E-03
92GO:0009228: thiamine biosynthetic process4.80E-03
93GO:0002238: response to molecule of fungal origin4.80E-03
94GO:0009759: indole glucosinolate biosynthetic process4.80E-03
95GO:0010256: endomembrane system organization4.80E-03
96GO:0009753: response to jasmonic acid5.47E-03
97GO:0042742: defense response to bacterium5.73E-03
98GO:0071470: cellular response to osmotic stress5.79E-03
99GO:0045926: negative regulation of growth5.79E-03
100GO:0009749: response to glucose5.79E-03
101GO:0010193: response to ozone6.19E-03
102GO:1900056: negative regulation of leaf senescence6.85E-03
103GO:1900057: positive regulation of leaf senescence6.85E-03
104GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.85E-03
105GO:0006333: chromatin assembly or disassembly6.85E-03
106GO:1902074: response to salt6.85E-03
107GO:0010044: response to aluminum ion6.85E-03
108GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.85E-03
109GO:0046470: phosphatidylcholine metabolic process6.85E-03
110GO:0009624: response to nematode7.74E-03
111GO:0010928: regulation of auxin mediated signaling pathway7.97E-03
112GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.97E-03
113GO:0009819: drought recovery7.97E-03
114GO:0043068: positive regulation of programmed cell death7.97E-03
115GO:0019375: galactolipid biosynthetic process7.97E-03
116GO:0045010: actin nucleation7.97E-03
117GO:0031540: regulation of anthocyanin biosynthetic process7.97E-03
118GO:0006102: isocitrate metabolic process7.97E-03
119GO:0010120: camalexin biosynthetic process9.15E-03
120GO:0010029: regulation of seed germination9.51E-03
121GO:0006906: vesicle fusion1.00E-02
122GO:0007338: single fertilization1.04E-02
123GO:0019432: triglyceride biosynthetic process1.04E-02
124GO:0015780: nucleotide-sugar transport1.04E-02
125GO:0006952: defense response1.07E-02
126GO:0009086: methionine biosynthetic process1.17E-02
127GO:0008202: steroid metabolic process1.17E-02
128GO:1900426: positive regulation of defense response to bacterium1.17E-02
129GO:0009738: abscisic acid-activated signaling pathway1.24E-02
130GO:0051555: flavonol biosynthetic process1.30E-02
131GO:0009407: toxin catabolic process1.30E-02
132GO:0009870: defense response signaling pathway, resistance gene-dependent1.30E-02
133GO:0006032: chitin catabolic process1.30E-02
134GO:0019684: photosynthesis, light reaction1.45E-02
135GO:0009682: induced systemic resistance1.45E-02
136GO:0009089: lysine biosynthetic process via diaminopimelate1.45E-02
137GO:0009684: indoleacetic acid biosynthetic process1.45E-02
138GO:0009867: jasmonic acid mediated signaling pathway1.49E-02
139GO:0045087: innate immune response1.49E-02
140GO:0010150: leaf senescence1.56E-02
141GO:0045037: protein import into chloroplast stroma1.59E-02
142GO:0000266: mitochondrial fission1.59E-02
143GO:0006979: response to oxidative stress1.64E-02
144GO:0006829: zinc II ion transport1.74E-02
145GO:0006626: protein targeting to mitochondrion1.74E-02
146GO:2000028: regulation of photoperiodism, flowering1.74E-02
147GO:0018107: peptidyl-threonine phosphorylation1.74E-02
148GO:0006887: exocytosis1.78E-02
149GO:0006897: endocytosis1.78E-02
150GO:0034605: cellular response to heat1.90E-02
151GO:0055085: transmembrane transport1.98E-02
152GO:0009225: nucleotide-sugar metabolic process2.06E-02
153GO:0046688: response to copper ion2.06E-02
154GO:0070588: calcium ion transmembrane transport2.06E-02
155GO:0000162: tryptophan biosynthetic process2.23E-02
156GO:0034976: response to endoplasmic reticulum stress2.23E-02
157GO:0006855: drug transmembrane transport2.25E-02
158GO:0030150: protein import into mitochondrial matrix2.40E-02
159GO:0080147: root hair cell development2.40E-02
160GO:0045333: cellular respiration2.40E-02
161GO:0006289: nucleotide-excision repair2.40E-02
162GO:2000377: regulation of reactive oxygen species metabolic process2.40E-02
163GO:0042538: hyperosmotic salinity response2.43E-02
164GO:0006812: cation transport2.43E-02
165GO:0050832: defense response to fungus2.47E-02
166GO:0006825: copper ion transport2.57E-02
167GO:0006334: nucleosome assembly2.75E-02
168GO:0051321: meiotic cell cycle2.75E-02
169GO:0016998: cell wall macromolecule catabolic process2.75E-02
170GO:0071369: cellular response to ethylene stimulus3.12E-02
171GO:0009723: response to ethylene3.24E-02
172GO:0009626: plant-type hypersensitive response3.28E-02
173GO:0010584: pollen exine formation3.31E-02
174GO:0042127: regulation of cell proliferation3.31E-02
175GO:0080167: response to karrikin3.53E-02
176GO:0046686: response to cadmium ion3.70E-02
177GO:0016192: vesicle-mediated transport3.75E-02
178GO:0018105: peptidyl-serine phosphorylation3.81E-02
179GO:0009960: endosperm development3.91E-02
180GO:0006885: regulation of pH3.91E-02
181GO:0010197: polar nucleus fusion3.91E-02
182GO:0010182: sugar mediated signaling pathway3.91E-02
183GO:0009414: response to water deprivation4.14E-02
184GO:0015979: photosynthesis4.15E-02
185GO:0006623: protein targeting to vacuole4.33E-02
186GO:0071554: cell wall organization or biogenesis4.54E-02
187GO:0002229: defense response to oomycetes4.54E-02
188GO:0007264: small GTPase mediated signal transduction4.76E-02
189GO:0006351: transcription, DNA-templated5.00E-02
RankGO TermAdjusted P value
1GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
2GO:0004865: protein serine/threonine phosphatase inhibitor activity0.00E+00
3GO:0050334: thiaminase activity0.00E+00
4GO:0005212: structural constituent of eye lens0.00E+00
5GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
6GO:0003978: UDP-glucose 4-epimerase activity3.33E-04
7GO:0047150: betaine-homocysteine S-methyltransferase activity4.43E-04
8GO:2001147: camalexin binding4.43E-04
9GO:0046481: digalactosyldiacylglycerol synthase activity4.43E-04
10GO:0015245: fatty acid transporter activity4.43E-04
11GO:0010285: L,L-diaminopimelate aminotransferase activity4.43E-04
12GO:2001227: quercitrin binding4.43E-04
13GO:0003994: aconitate hydratase activity9.56E-04
14GO:0015152: glucose-6-phosphate transmembrane transporter activity9.56E-04
15GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity9.56E-04
16GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity9.56E-04
17GO:0032934: sterol binding9.56E-04
18GO:0050736: O-malonyltransferase activity9.56E-04
19GO:0048531: beta-1,3-galactosyltransferase activity9.56E-04
20GO:0015036: disulfide oxidoreductase activity9.56E-04
21GO:0008375: acetylglucosaminyltransferase activity1.47E-03
22GO:0004324: ferredoxin-NADP+ reductase activity1.56E-03
23GO:0016531: copper chaperone activity1.56E-03
24GO:0032403: protein complex binding1.56E-03
25GO:0071917: triose-phosphate transmembrane transporter activity1.56E-03
26GO:0005457: GDP-fucose transmembrane transporter activity1.56E-03
27GO:0003979: UDP-glucose 6-dehydrogenase activity1.56E-03
28GO:0030247: polysaccharide binding1.58E-03
29GO:0005509: calcium ion binding1.61E-03
30GO:0043565: sequence-specific DNA binding1.63E-03
31GO:0030553: cGMP binding2.03E-03
32GO:0030552: cAMP binding2.03E-03
33GO:0035529: NADH pyrophosphatase activity2.25E-03
34GO:0035250: UDP-galactosyltransferase activity2.25E-03
35GO:0030527: structural constituent of chromatin2.25E-03
36GO:0017077: oxidative phosphorylation uncoupler activity2.25E-03
37GO:0001046: core promoter sequence-specific DNA binding2.52E-03
38GO:0005216: ion channel activity2.78E-03
39GO:0005516: calmodulin binding3.01E-03
40GO:0004930: G-protein coupled receptor activity3.03E-03
41GO:0009916: alternative oxidase activity3.03E-03
42GO:0015120: phosphoglycerate transmembrane transporter activity3.03E-03
43GO:0050373: UDP-arabinose 4-epimerase activity3.03E-03
44GO:0004834: tryptophan synthase activity3.03E-03
45GO:0015297: antiporter activity3.29E-03
46GO:0005496: steroid binding3.88E-03
47GO:0047631: ADP-ribose diphosphatase activity3.88E-03
48GO:0005471: ATP:ADP antiporter activity3.88E-03
49GO:0030551: cyclic nucleotide binding4.65E-03
50GO:0005249: voltage-gated potassium channel activity4.65E-03
51GO:0000210: NAD+ diphosphatase activity4.80E-03
52GO:0008519: ammonium transmembrane transporter activity4.80E-03
53GO:0042626: ATPase activity, coupled to transmembrane movement of substances5.09E-03
54GO:0004144: diacylglycerol O-acyltransferase activity5.79E-03
55GO:0004656: procollagen-proline 4-dioxygenase activity5.79E-03
56GO:0003700: transcription factor activity, sequence-specific DNA binding6.04E-03
57GO:0043295: glutathione binding6.85E-03
58GO:0047893: flavonol 3-O-glucosyltransferase activity7.97E-03
59GO:0004714: transmembrane receptor protein tyrosine kinase activity7.97E-03
60GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity7.99E-03
61GO:0004630: phospholipase D activity9.15E-03
62GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.15E-03
63GO:0008142: oxysterol binding9.15E-03
64GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.18E-02
65GO:0015020: glucuronosyltransferase activity1.30E-02
66GO:0004864: protein phosphatase inhibitor activity1.30E-02
67GO:0004713: protein tyrosine kinase activity1.30E-02
68GO:0004568: chitinase activity1.30E-02
69GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.42E-02
70GO:0015198: oligopeptide transporter activity1.59E-02
71GO:0000149: SNARE binding1.63E-02
72GO:0005388: calcium-transporting ATPase activity1.74E-02
73GO:0015266: protein channel activity1.74E-02
74GO:0004022: alcohol dehydrogenase (NAD) activity1.74E-02
75GO:0005315: inorganic phosphate transmembrane transporter activity1.74E-02
76GO:0008194: UDP-glycosyltransferase activity1.79E-02
77GO:0004364: glutathione transferase activity1.85E-02
78GO:0016301: kinase activity1.90E-02
79GO:0005484: SNAP receptor activity1.93E-02
80GO:0008061: chitin binding2.06E-02
81GO:0003712: transcription cofactor activity2.06E-02
82GO:0051287: NAD binding2.34E-02
83GO:0031418: L-ascorbic acid binding2.40E-02
84GO:0008324: cation transmembrane transporter activity2.57E-02
85GO:0035251: UDP-glucosyltransferase activity2.75E-02
86GO:0004707: MAP kinase activity2.75E-02
87GO:0003682: chromatin binding2.89E-02
88GO:0008810: cellulase activity3.12E-02
89GO:0004499: N,N-dimethylaniline monooxygenase activity3.31E-02
90GO:0080044: quercetin 7-O-glucosyltransferase activity3.39E-02
91GO:0080043: quercetin 3-O-glucosyltransferase activity3.39E-02
92GO:0022857: transmembrane transporter activity3.49E-02
93GO:0016874: ligase activity3.49E-02
94GO:0005451: monovalent cation:proton antiporter activity3.71E-02
95GO:0015035: protein disulfide oxidoreductase activity3.81E-02
96GO:0046873: metal ion transmembrane transporter activity3.91E-02
97GO:0015299: solute:proton antiporter activity4.12E-02
98GO:0050662: coenzyme binding4.12E-02
99GO:0016758: transferase activity, transferring hexosyl groups4.51E-02
100GO:0004197: cysteine-type endopeptidase activity4.76E-02
101GO:0015385: sodium:proton antiporter activity4.98E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane1.34E-08
2GO:0000813: ESCRT I complex1.74E-04
3GO:0000164: protein phosphatase type 1 complex1.74E-04
4GO:0005794: Golgi apparatus4.21E-04
5GO:0005886: plasma membrane4.97E-04
6GO:0005901: caveola9.56E-04
7GO:0031314: extrinsic component of mitochondrial inner membrane9.56E-04
8GO:0005743: mitochondrial inner membrane1.13E-03
9GO:0030658: transport vesicle membrane2.25E-03
10GO:0005789: endoplasmic reticulum membrane5.37E-03
11GO:0005774: vacuolar membrane6.65E-03
12GO:0005887: integral component of plasma membrane8.26E-03
13GO:0005742: mitochondrial outer membrane translocase complex9.15E-03
14GO:0005783: endoplasmic reticulum9.64E-03
15GO:0030665: clathrin-coated vesicle membrane1.17E-02
16GO:0005740: mitochondrial envelope1.30E-02
17GO:0017119: Golgi transport complex1.30E-02
18GO:0031307: integral component of mitochondrial outer membrane1.59E-02
19GO:0031012: extracellular matrix1.74E-02
20GO:0005578: proteinaceous extracellular matrix1.74E-02
21GO:0031201: SNARE complex1.78E-02
22GO:0031902: late endosome membrane1.78E-02
23GO:0043231: intracellular membrane-bounded organelle1.99E-02
24GO:0005795: Golgi stack2.06E-02
25GO:0005758: mitochondrial intermembrane space2.40E-02
26GO:0070469: respiratory chain2.57E-02
27GO:0005741: mitochondrial outer membrane2.75E-02
28GO:0000139: Golgi membrane2.86E-02
29GO:0005802: trans-Golgi network2.93E-02
30GO:0005768: endosome3.63E-02
31GO:0009706: chloroplast inner membrane3.71E-02
32GO:0005770: late endosome3.91E-02
33GO:0016592: mediator complex4.76E-02
34GO:0000785: chromatin4.76E-02
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Gene type



Gene DE type