co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
2	GO:1900424: regulation of defense response to bacterium	1.13E-05
3	GO:0010498: proteasomal protein catabolic process	5.40E-05
4	GO:0046168: glycerol-3-phosphate catabolic process	5.40E-05
5	GO:0006383: transcription from RNA polymerase III promoter	8.23E-05
6	GO:0032456: endocytic recycling	8.23E-05
7	GO:0006072: glycerol-3-phosphate metabolic process	8.23E-05
8	GO:1903830: magnesium ion transmembrane transport	1.14E-04
9	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.86E-04
10	GO:0015693: magnesium ion transport	2.66E-04
11	GO:0000338: protein deneddylation	2.66E-04
12	GO:1900150: regulation of defense response to fungus	3.08E-04
13	GO:0008610: lipid biosynthetic process	3.08E-04
14	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.52E-04
15	GO:0006896: Golgi to vacuole transport	4.91E-04
16	GO:0071365: cellular response to auxin stimulus	5.89E-04
17	GO:0019953: sexual reproduction	9.08E-04
18	GO:0030433: ubiquitin-dependent ERAD pathway	1.02E-03
19	GO:0019748: secondary metabolic process	1.02E-03
20	GO:0042147: retrograde transport, endosome to Golgi	1.20E-03
21	GO:0002229: defense response to oomycetes	1.52E-03
22	GO:0007264: small GTPase mediated signal transduction	1.59E-03
23	GO:0030163: protein catabolic process	1.66E-03
24	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.02E-03
25	GO:0009627: systemic acquired resistance	2.09E-03
26	GO:0008219: cell death	2.32E-03
27	GO:0030001: metal ion transport	2.97E-03
28	GO:0006511: ubiquitin-dependent protein catabolic process	3.22E-03
29	GO:0009640: photomorphogenesis	3.23E-03
30	GO:0000165: MAPK cascade	3.68E-03
31	GO:0009585: red, far-red light phototransduction	3.95E-03
32	GO:0009620: response to fungus	4.73E-03
33	GO:0009553: embryo sac development	4.93E-03
34	GO:0015031: protein transport	6.06E-03
35	GO:0009617: response to bacterium	8.30E-03
36	GO:0007275: multicellular organism development	9.38E-03
37	GO:0009860: pollen tube growth	1.05E-02
38	GO:0009723: response to ethylene	1.10E-02
39	GO:0055114: oxidation-reduction process	1.13E-02
40	GO:0046777: protein autophosphorylation	1.21E-02
41	GO:0045892: negative regulation of transcription, DNA-templated	1.33E-02
42	GO:0009873: ethylene-activated signaling pathway	1.83E-02
43	GO:0009738: abscisic acid-activated signaling pathway	2.24E-02
44	GO:0009555: pollen development	2.29E-02
45	GO:0009414: response to water deprivation	3.73E-02

Rank	GO Term	Adjusted P value
1	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	3.00E-05
2	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	5.40E-05
3	GO:0005093: Rab GDP-dissociation inhibitor activity	5.40E-05
4	GO:0019905: syntaxin binding	1.14E-04
5	GO:0017137: Rab GTPase binding	1.49E-04
6	GO:0036402: proteasome-activating ATPase activity	1.86E-04
7	GO:0004709: MAP kinase kinase kinase activity	1.86E-04
8	GO:0015095: magnesium ion transmembrane transporter activity	6.40E-04
9	GO:0017025: TBP-class protein binding	7.45E-04
10	GO:0003714: transcription corepressor activity	8.54E-04
11	GO:0046873: metal ion transmembrane transporter activity	1.33E-03
12	GO:0004721: phosphoprotein phosphatase activity	2.17E-03
13	GO:0005096: GTPase activator activity	2.40E-03
14	GO:0030145: manganese ion binding	2.56E-03
15	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.89E-03
16	GO:0004185: serine-type carboxypeptidase activity	3.23E-03
17	GO:0005198: structural molecule activity	3.50E-03
18	GO:0051287: NAD binding	3.68E-03
19	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.95E-03
20	GO:0045735: nutrient reservoir activity	4.43E-03
21	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.53E-03
22	GO:0016874: ligase activity	4.83E-03
23	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.98E-03
24	GO:0016491: oxidoreductase activity	6.28E-03
25	GO:0004497: monooxygenase activity	1.16E-02
26	GO:0016887: ATPase activity	2.08E-02
27	GO:0019825: oxygen binding	2.95E-02
28	GO:0005516: calmodulin binding	3.07E-02
29	GO:0005506: iron ion binding	3.75E-02

Rank	GO Term	Adjusted P value
1	GO:0012510: trans-Golgi network transport vesicle membrane	1.13E-05
2	GO:0000938: GARP complex	3.00E-05
3	GO:0009331: glycerol-3-phosphate dehydrogenase complex	8.23E-05
4	GO:0000502: proteasome complex	2.06E-04
5	GO:0031597: cytosolic proteasome complex	2.25E-04
6	GO:0010008: endosome membrane	2.53E-04
7	GO:0031595: nuclear proteasome complex	2.66E-04
8	GO:0008180: COP9 signalosome	3.97E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	4.44E-04
10	GO:0005769: early endosome	7.99E-04
11	GO:0000325: plant-type vacuole	2.56E-03
12	GO:0005802: trans-Golgi network	3.79E-03
13	GO:0005768: endosome	4.30E-03
14	GO:0012505: endomembrane system	4.93E-03
15	GO:0000139: Golgi membrane	6.46E-03
16	GO:0048046: apoplast	1.74E-02
17	GO:0005794: Golgi apparatus	2.17E-02
18	GO:0005829: cytosol	3.00E-02
19	GO:0031225: anchored component of membrane	3.15E-02
20	GO:0005783: endoplasmic reticulum	3.35E-02
21	GO:0009505: plant-type cell wall	4.46E-02