co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
7	GO:0006412: translation	1.19E-10
8	GO:0032544: plastid translation	1.82E-10
9	GO:0015979: photosynthesis	2.02E-08
10	GO:0042254: ribosome biogenesis	9.26E-08
11	GO:0009773: photosynthetic electron transport in photosystem I	1.69E-07
12	GO:0015995: chlorophyll biosynthetic process	8.09E-07
13	GO:0009735: response to cytokinin	5.52E-06
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.47E-05
15	GO:0010207: photosystem II assembly	2.39E-05
16	GO:0019464: glycine decarboxylation via glycine cleavage system	2.72E-05
17	GO:1901259: chloroplast rRNA processing	9.02E-05
18	GO:0009772: photosynthetic electron transport in photosystem II	1.20E-04
19	GO:0034337: RNA folding	1.91E-04
20	GO:0009657: plastid organization	1.91E-04
21	GO:0018119: peptidyl-cysteine S-nitrosylation	3.78E-04
22	GO:0006729: tetrahydrobiopterin biosynthetic process	4.29E-04
23	GO:0010270: photosystem II oxygen evolving complex assembly	4.29E-04
24	GO:0010198: synergid death	4.29E-04
25	GO:0035436: triose phosphate transmembrane transport	6.99E-04
26	GO:0090391: granum assembly	6.99E-04
27	GO:0006518: peptide metabolic process	6.99E-04
28	GO:0010114: response to red light	7.18E-04
29	GO:0009768: photosynthesis, light harvesting in photosystem I	8.41E-04
30	GO:0006810: transport	8.73E-04
31	GO:0061077: chaperone-mediated protein folding	9.21E-04
32	GO:0006986: response to unfolded protein	9.97E-04
33	GO:0006020: inositol metabolic process	9.97E-04
34	GO:0071484: cellular response to light intensity	9.97E-04
35	GO:0051085: chaperone mediated protein folding requiring cofactor	9.97E-04
36	GO:0010731: protein glutathionylation	9.97E-04
37	GO:0006021: inositol biosynthetic process	1.32E-03
38	GO:0006542: glutamine biosynthetic process	1.32E-03
39	GO:0019676: ammonia assimilation cycle	1.32E-03
40	GO:0045727: positive regulation of translation	1.32E-03
41	GO:0015994: chlorophyll metabolic process	1.32E-03
42	GO:0015713: phosphoglycerate transport	1.32E-03
43	GO:0006546: glycine catabolic process	1.32E-03
44	GO:0006461: protein complex assembly	1.68E-03
45	GO:0016120: carotene biosynthetic process	1.68E-03
46	GO:0009643: photosynthetic acclimation	2.07E-03
47	GO:0006751: glutathione catabolic process	2.07E-03
48	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.07E-03
49	GO:0006828: manganese ion transport	2.07E-03
50	GO:0046855: inositol phosphate dephosphorylation	2.07E-03
51	GO:1902456: regulation of stomatal opening	2.07E-03
52	GO:0010190: cytochrome b6f complex assembly	2.07E-03
53	GO:0009854: oxidative photosynthetic carbon pathway	2.49E-03
54	GO:0009955: adaxial/abaxial pattern specification	2.49E-03
55	GO:0046686: response to cadmium ion	3.39E-03
56	GO:0009739: response to gibberellin	3.72E-03
57	GO:0009853: photorespiration	4.33E-03
58	GO:0006783: heme biosynthetic process	4.40E-03
59	GO:0006754: ATP biosynthetic process	4.40E-03
60	GO:0006098: pentose-phosphate shunt	4.40E-03
61	GO:0010206: photosystem II repair	4.40E-03
62	GO:0006949: syncytium formation	5.48E-03
63	GO:0006782: protoporphyrinogen IX biosynthetic process	5.48E-03
64	GO:0009658: chloroplast organization	5.61E-03
65	GO:0000272: polysaccharide catabolic process	6.06E-03
66	GO:0006816: calcium ion transport	6.06E-03
67	GO:0006415: translational termination	6.06E-03
68	GO:0006790: sulfur compound metabolic process	6.66E-03
69	GO:0016024: CDP-diacylglycerol biosynthetic process	6.66E-03
70	GO:0006094: gluconeogenesis	7.28E-03
71	GO:0006364: rRNA processing	7.50E-03
72	GO:0010143: cutin biosynthetic process	7.91E-03
73	GO:0019253: reductive pentose-phosphate cycle	7.91E-03
74	GO:0046854: phosphatidylinositol phosphorylation	8.57E-03
75	GO:0006096: glycolytic process	8.88E-03
76	GO:0051017: actin filament bundle assembly	9.94E-03
77	GO:0000027: ribosomal large subunit assembly	9.94E-03
78	GO:0009740: gibberellic acid mediated signaling pathway	1.01E-02
79	GO:0006418: tRNA aminoacylation for protein translation	1.07E-02
80	GO:0016226: iron-sulfur cluster assembly	1.21E-02
81	GO:0006012: galactose metabolic process	1.29E-02
82	GO:0016117: carotenoid biosynthetic process	1.45E-02
83	GO:0042631: cellular response to water deprivation	1.53E-02
84	GO:0006633: fatty acid biosynthetic process	1.69E-02
85	GO:0015986: ATP synthesis coupled proton transport	1.70E-02
86	GO:0009828: plant-type cell wall loosening	2.15E-02
87	GO:0010027: thylakoid membrane organization	2.44E-02
88	GO:0009409: response to cold	2.85E-02
89	GO:0018298: protein-chromophore linkage	2.95E-02
90	GO:0009817: defense response to fungus, incompatible interaction	2.95E-02
91	GO:0048481: plant ovule development	2.95E-02
92	GO:0009813: flavonoid biosynthetic process	3.05E-02
93	GO:0010218: response to far red light	3.16E-02
94	GO:0007568: aging	3.27E-02
95	GO:0010119: regulation of stomatal movement	3.27E-02
96	GO:0006457: protein folding	3.45E-02
97	GO:0009637: response to blue light	3.49E-02
98	GO:0080167: response to karrikin	3.56E-02
99	GO:0006869: lipid transport	4.66E-02
100	GO:0009664: plant-type cell wall organization	4.90E-02
101	GO:0042538: hyperosmotic salinity response	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0008887: glycerate kinase activity	0.00E+00
10	GO:0019843: rRNA binding	1.87E-20
11	GO:0003735: structural constituent of ribosome	3.44E-14
12	GO:0005528: FK506 binding	9.48E-07
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.87E-06
14	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.47E-05
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.72E-05
16	GO:0004853: uroporphyrinogen decarboxylase activity	1.91E-04
17	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.91E-04
18	GO:0009374: biotin binding	1.91E-04
19	GO:0047746: chlorophyllase activity	4.29E-04
20	GO:0004618: phosphoglycerate kinase activity	4.29E-04
21	GO:0010297: heteropolysaccharide binding	4.29E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	4.29E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	4.29E-04
24	GO:0008934: inositol monophosphate 1-phosphatase activity	4.29E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	4.29E-04
26	GO:0008967: phosphoglycolate phosphatase activity	4.29E-04
27	GO:0016630: protochlorophyllide reductase activity	4.29E-04
28	GO:0031072: heat shock protein binding	4.93E-04
29	GO:0031409: pigment binding	6.92E-04
30	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.99E-04
31	GO:0071917: triose-phosphate transmembrane transporter activity	6.99E-04
32	GO:0002161: aminoacyl-tRNA editing activity	6.99E-04
33	GO:0004148: dihydrolipoyl dehydrogenase activity	6.99E-04
34	GO:0008097: 5S rRNA binding	9.97E-04
35	GO:0016851: magnesium chelatase activity	9.97E-04
36	GO:0016149: translation release factor activity, codon specific	9.97E-04
37	GO:0015120: phosphoglycerate transmembrane transporter activity	1.32E-03
38	GO:0045430: chalcone isomerase activity	1.32E-03
39	GO:0051082: unfolded protein binding	1.61E-03
40	GO:0004356: glutamate-ammonia ligase activity	1.68E-03
41	GO:0003989: acetyl-CoA carboxylase activity	1.68E-03
42	GO:0003959: NADPH dehydrogenase activity	1.68E-03
43	GO:0048038: quinone binding	1.83E-03
44	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.07E-03
45	GO:0004332: fructose-bisphosphate aldolase activity	2.07E-03
46	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.07E-03
47	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.49E-03
48	GO:0016168: chlorophyll binding	2.78E-03
49	GO:0004034: aldose 1-epimerase activity	3.40E-03
50	GO:0004222: metalloendopeptidase activity	3.77E-03
51	GO:0003747: translation release factor activity	4.40E-03
52	GO:0005384: manganese ion transmembrane transporter activity	4.93E-03
53	GO:0030234: enzyme regulator activity	5.48E-03
54	GO:0047372: acylglycerol lipase activity	6.06E-03
55	GO:0000049: tRNA binding	6.66E-03
56	GO:0015095: magnesium ion transmembrane transporter activity	7.28E-03
57	GO:0008266: poly(U) RNA binding	7.91E-03
58	GO:0016491: oxidoreductase activity	8.35E-03
59	GO:0051536: iron-sulfur cluster binding	9.94E-03
60	GO:0051087: chaperone binding	1.07E-02
61	GO:0003727: single-stranded RNA binding	1.37E-02
62	GO:0004812: aminoacyl-tRNA ligase activity	1.45E-02
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.62E-02
64	GO:0016853: isomerase activity	1.70E-02
65	GO:0050662: coenzyme binding	1.70E-02
66	GO:0051015: actin filament binding	2.06E-02
67	GO:0016791: phosphatase activity	2.15E-02
68	GO:0008237: metallopeptidase activity	2.25E-02
69	GO:0008168: methyltransferase activity	2.77E-02
70	GO:0003723: RNA binding	3.11E-02
71	GO:0004364: glutathione transferase activity	4.06E-02
72	GO:0004185: serine-type carboxypeptidase activity	4.18E-02
73	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02
74	GO:0043621: protein self-association	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0005835: fatty acid synthase complex	0.00E+00
3	GO:0009575: chromoplast stroma	0.00E+00
4	GO:0009507: chloroplast	5.33E-75
5	GO:0009535: chloroplast thylakoid membrane	6.14E-42
6	GO:0009941: chloroplast envelope	1.82E-41
7	GO:0009570: chloroplast stroma	2.94E-41
8	GO:0009579: thylakoid	2.34E-29
9	GO:0009534: chloroplast thylakoid	3.35E-26
10	GO:0005840: ribosome	2.18E-15
11	GO:0009543: chloroplast thylakoid lumen	1.04E-13
12	GO:0031977: thylakoid lumen	1.40E-12
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.35E-10
14	GO:0031969: chloroplast membrane	1.12E-08
15	GO:0005960: glycine cleavage complex	1.47E-05
16	GO:0030095: chloroplast photosystem II	2.39E-05
17	GO:0010287: plastoglobule	3.02E-05
18	GO:0009654: photosystem II oxygen evolving complex	4.81E-05
19	GO:0019898: extrinsic component of membrane	1.46E-04
20	GO:0016020: membrane	1.47E-04
21	GO:0009547: plastid ribosome	1.91E-04
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.29E-04
23	GO:0030076: light-harvesting complex	6.22E-04
24	GO:0010007: magnesium chelatase complex	6.99E-04
25	GO:0009317: acetyl-CoA carboxylase complex	6.99E-04
26	GO:0015935: small ribosomal subunit	9.21E-04
27	GO:0009544: chloroplast ATP synthase complex	1.32E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.07E-03
29	GO:0048046: apoplast	2.16E-03
30	GO:0010319: stromule	2.34E-03
31	GO:0009533: chloroplast stromal thylakoid	2.93E-03
32	GO:0015934: large ribosomal subunit	3.95E-03
33	GO:0005763: mitochondrial small ribosomal subunit	4.40E-03
34	GO:0022626: cytosolic ribosome	5.86E-03
35	GO:0000311: plastid large ribosomal subunit	6.66E-03
36	GO:0032040: small-subunit processome	6.66E-03
37	GO:0009508: plastid chromosome	7.28E-03
38	GO:0000312: plastid small ribosomal subunit	7.91E-03
39	GO:0009706: chloroplast inner membrane	1.07E-02
40	GO:0042651: thylakoid membrane	1.07E-02
41	GO:0015629: actin cytoskeleton	1.29E-02
42	GO:0009522: photosystem I	1.70E-02
43	GO:0009523: photosystem II	1.79E-02
44	GO:0009295: nucleoid	2.25E-02
45	GO:0009536: plastid	2.46E-02
46	GO:0009707: chloroplast outer membrane	2.95E-02
47	GO:0022625: cytosolic large ribosomal subunit	3.74E-02
48	GO:0005856: cytoskeleton	4.54E-02