co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0042352: GDP-L-fucose salvage	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:0000819: sister chromatid segregation	0.00E+00
6	GO:0001778: plasma membrane repair	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
12	GO:0006907: pinocytosis	0.00E+00
13	GO:0048497: maintenance of floral organ identity	3.12E-04
14	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.45E-04
15	GO:0030488: tRNA methylation	5.78E-04
16	GO:0015904: tetracycline transport	6.40E-04
17	GO:0010726: positive regulation of hydrogen peroxide metabolic process	6.40E-04
18	GO:0006438: valyl-tRNA aminoacylation	6.40E-04
19	GO:0046520: sphingoid biosynthetic process	6.40E-04
20	GO:0010480: microsporocyte differentiation	6.40E-04
21	GO:0006426: glycyl-tRNA aminoacylation	6.40E-04
22	GO:0042759: long-chain fatty acid biosynthetic process	6.40E-04
23	GO:0009686: gibberellin biosynthetic process	8.31E-04
24	GO:0046620: regulation of organ growth	9.19E-04
25	GO:2000123: positive regulation of stomatal complex development	1.38E-03
26	GO:0061062: regulation of nematode larval development	1.38E-03
27	GO:0018026: peptidyl-lysine monomethylation	1.38E-03
28	GO:0009786: regulation of asymmetric cell division	1.38E-03
29	GO:0046740: transport of virus in host, cell to cell	1.38E-03
30	GO:0031648: protein destabilization	1.38E-03
31	GO:0009733: response to auxin	1.44E-03
32	GO:0009793: embryo development ending in seed dormancy	1.90E-03
33	GO:0048575: short-day photoperiodism, flowering	2.27E-03
34	GO:0045910: negative regulation of DNA recombination	2.27E-03
35	GO:0016255: attachment of GPI anchor to protein	2.27E-03
36	GO:0010020: chloroplast fission	3.16E-03
37	GO:0032456: endocytic recycling	3.30E-03
38	GO:0007276: gamete generation	3.30E-03
39	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.30E-03
40	GO:0006612: protein targeting to membrane	3.30E-03
41	GO:0010321: regulation of vegetative phase change	3.30E-03
42	GO:0048629: trichome patterning	4.45E-03
43	GO:0009765: photosynthesis, light harvesting	4.45E-03
44	GO:2000038: regulation of stomatal complex development	4.45E-03
45	GO:0042991: transcription factor import into nucleus	4.45E-03
46	GO:0009755: hormone-mediated signaling pathway	4.45E-03
47	GO:0016123: xanthophyll biosynthetic process	5.72E-03
48	GO:0010438: cellular response to sulfur starvation	5.72E-03
49	GO:0010375: stomatal complex patterning	5.72E-03
50	GO:0016120: carotene biosynthetic process	5.72E-03
51	GO:0045487: gibberellin catabolic process	5.72E-03
52	GO:0010405: arabinogalactan protein metabolic process	7.10E-03
53	GO:0010358: leaf shaping	7.10E-03
54	GO:0016554: cytidine to uridine editing	7.10E-03
55	GO:0009913: epidermal cell differentiation	7.10E-03
56	GO:1902456: regulation of stomatal opening	7.10E-03
57	GO:0018258: protein O-linked glycosylation via hydroxyproline	7.10E-03
58	GO:0042793: transcription from plastid promoter	7.10E-03
59	GO:0033365: protein localization to organelle	7.10E-03
60	GO:0003006: developmental process involved in reproduction	7.10E-03
61	GO:0010942: positive regulation of cell death	7.10E-03
62	GO:0009734: auxin-activated signaling pathway	7.87E-03
63	GO:0009612: response to mechanical stimulus	8.58E-03
64	GO:0031930: mitochondria-nucleus signaling pathway	8.58E-03
65	GO:0009082: branched-chain amino acid biosynthetic process	8.58E-03
66	GO:0009099: valine biosynthetic process	8.58E-03
67	GO:0006468: protein phosphorylation	9.75E-03
68	GO:0009736: cytokinin-activated signaling pathway	1.01E-02
69	GO:0000712: resolution of meiotic recombination intermediates	1.02E-02
70	GO:0045995: regulation of embryonic development	1.02E-02
71	GO:1900056: negative regulation of leaf senescence	1.02E-02
72	GO:0030497: fatty acid elongation	1.02E-02
73	GO:0048437: floral organ development	1.02E-02
74	GO:0010098: suspensor development	1.02E-02
75	GO:0048825: cotyledon development	1.02E-02
76	GO:0071554: cell wall organization or biogenesis	1.09E-02
77	GO:0032502: developmental process	1.17E-02
78	GO:0010583: response to cyclopentenone	1.17E-02
79	GO:0000105: histidine biosynthetic process	1.19E-02
80	GO:0009819: drought recovery	1.19E-02
81	GO:0010439: regulation of glucosinolate biosynthetic process	1.19E-02
82	GO:0001522: pseudouridine synthesis	1.19E-02
83	GO:0042255: ribosome assembly	1.19E-02
84	GO:0006353: DNA-templated transcription, termination	1.19E-02
85	GO:0009690: cytokinin metabolic process	1.19E-02
86	GO:0009704: de-etiolation	1.19E-02
87	GO:2000070: regulation of response to water deprivation	1.19E-02
88	GO:0010492: maintenance of shoot apical meristem identity	1.19E-02
89	GO:0016042: lipid catabolic process	1.23E-02
90	GO:0009657: plastid organization	1.36E-02
91	GO:0009097: isoleucine biosynthetic process	1.36E-02
92	GO:0048364: root development	1.39E-02
93	GO:0000902: cell morphogenesis	1.55E-02
94	GO:0051865: protein autoubiquitination	1.55E-02
95	GO:0048507: meristem development	1.55E-02
96	GO:0009056: catabolic process	1.55E-02
97	GO:0010027: thylakoid membrane organization	1.59E-02
98	GO:0009658: chloroplast organization	1.62E-02
99	GO:0005982: starch metabolic process	1.75E-02
100	GO:0009638: phototropism	1.75E-02
101	GO:0006779: porphyrin-containing compound biosynthetic process	1.75E-02
102	GO:1900865: chloroplast RNA modification	1.75E-02
103	GO:0009641: shade avoidance	1.95E-02
104	GO:0006298: mismatch repair	1.95E-02
105	GO:0006949: syncytium formation	1.95E-02
106	GO:0006259: DNA metabolic process	1.95E-02
107	GO:0006782: protoporphyrinogen IX biosynthetic process	1.95E-02
108	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.95E-02
109	GO:0048829: root cap development	1.95E-02
110	GO:0006355: regulation of transcription, DNA-templated	2.04E-02
111	GO:0048366: leaf development	2.06E-02
112	GO:0016567: protein ubiquitination	2.11E-02
113	GO:0009682: induced systemic resistance	2.16E-02
114	GO:0008285: negative regulation of cell proliferation	2.16E-02
115	GO:0006265: DNA topological change	2.16E-02
116	GO:0009073: aromatic amino acid family biosynthetic process	2.16E-02
117	GO:0048229: gametophyte development	2.16E-02
118	GO:0000160: phosphorelay signal transduction system	2.18E-02
119	GO:0006351: transcription, DNA-templated	2.37E-02
120	GO:0006312: mitotic recombination	2.38E-02
121	GO:0012501: programmed cell death	2.38E-02
122	GO:0005983: starch catabolic process	2.38E-02
123	GO:0010582: floral meristem determinacy	2.38E-02
124	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.38E-02
125	GO:0006865: amino acid transport	2.52E-02
126	GO:0010075: regulation of meristem growth	2.61E-02
127	GO:0010588: cotyledon vascular tissue pattern formation	2.61E-02
128	GO:0010102: lateral root morphogenesis	2.61E-02
129	GO:0009785: blue light signaling pathway	2.61E-02
130	GO:0030048: actin filament-based movement	2.61E-02
131	GO:0009691: cytokinin biosynthetic process	2.61E-02
132	GO:0010628: positive regulation of gene expression	2.61E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	2.64E-02
134	GO:0009887: animal organ morphogenesis	2.84E-02
135	GO:0009934: regulation of meristem structural organization	2.84E-02
136	GO:0006302: double-strand break repair	2.84E-02
137	GO:0048467: gynoecium development	2.84E-02
138	GO:0007034: vacuolar transport	2.84E-02
139	GO:0040008: regulation of growth	2.99E-02
140	GO:0090351: seedling development	3.08E-02
141	GO:0006631: fatty acid metabolic process	3.13E-02
142	GO:0000162: tryptophan biosynthetic process	3.33E-02
143	GO:0010025: wax biosynthetic process	3.33E-02
144	GO:0006863: purine nucleobase transport	3.33E-02
145	GO:0009926: auxin polar transport	3.40E-02
146	GO:0009416: response to light stimulus	3.42E-02
147	GO:0042546: cell wall biogenesis	3.54E-02
148	GO:0051017: actin filament bundle assembly	3.59E-02
149	GO:0009739: response to gibberellin	3.64E-02
150	GO:0019953: sexual reproduction	3.85E-02
151	GO:0006418: tRNA aminoacylation for protein translation	3.85E-02
152	GO:0048511: rhythmic process	4.12E-02
153	GO:0048278: vesicle docking	4.12E-02
154	GO:0051321: meiotic cell cycle	4.12E-02
155	GO:0016114: terpenoid biosynthetic process	4.12E-02
156	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.39E-02
157	GO:0071555: cell wall organization	4.62E-02
158	GO:0009625: response to insect	4.67E-02
159	GO:0071215: cellular response to abscisic acid stimulus	4.67E-02
160	GO:0010082: regulation of root meristem growth	4.67E-02
161	GO:0009294: DNA mediated transformation	4.67E-02
162	GO:0045492: xylan biosynthetic process	4.95E-02
163	GO:0010091: trichome branching	4.95E-02
164	GO:0042127: regulation of cell proliferation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0015267: channel activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
4	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
6	GO:0050201: fucokinase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0071633: dihydroceramidase activity	0.00E+00
9	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
10	GO:0047661: amino-acid racemase activity	0.00E+00
11	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
12	GO:0009899: ent-kaurene synthase activity	0.00E+00
13	GO:0010012: steroid 22-alpha hydroxylase activity	6.40E-04
14	GO:0000170: sphingosine hydroxylase activity	6.40E-04
15	GO:0050139: nicotinate-N-glucosyltransferase activity	6.40E-04
16	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	6.40E-04
17	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	6.40E-04
18	GO:0052381: tRNA dimethylallyltransferase activity	6.40E-04
19	GO:0004160: dihydroxy-acid dehydratase activity	6.40E-04
20	GO:0004832: valine-tRNA ligase activity	6.40E-04
21	GO:0004820: glycine-tRNA ligase activity	6.40E-04
22	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.38E-03
23	GO:0010296: prenylcysteine methylesterase activity	1.38E-03
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.38E-03
25	GO:0042284: sphingolipid delta-4 desaturase activity	1.38E-03
26	GO:0008493: tetracycline transporter activity	1.38E-03
27	GO:1901981: phosphatidylinositol phosphate binding	1.38E-03
28	GO:0019200: carbohydrate kinase activity	1.38E-03
29	GO:0043621: protein self-association	1.49E-03
30	GO:0070330: aromatase activity	2.27E-03
31	GO:0045544: gibberellin 20-oxidase activity	3.30E-03
32	GO:0001872: (1->3)-beta-D-glucan binding	3.30E-03
33	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.30E-03
34	GO:0003916: DNA topoisomerase activity	3.30E-03
35	GO:0004674: protein serine/threonine kinase activity	4.33E-03
36	GO:0016279: protein-lysine N-methyltransferase activity	4.45E-03
37	GO:0016836: hydro-lyase activity	4.45E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.45E-03
39	GO:0019199: transmembrane receptor protein kinase activity	4.45E-03
40	GO:0046556: alpha-L-arabinofuranosidase activity	4.45E-03
41	GO:0004335: galactokinase activity	4.45E-03
42	GO:0004519: endonuclease activity	4.73E-03
43	GO:0008408: 3'-5' exonuclease activity	5.34E-03
44	GO:0004176: ATP-dependent peptidase activity	5.34E-03
45	GO:0018685: alkane 1-monooxygenase activity	5.72E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.72E-03
47	GO:0003727: single-stranded RNA binding	6.96E-03
48	GO:2001070: starch binding	7.10E-03
49	GO:0030983: mismatched DNA binding	7.10E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	7.10E-03
51	GO:0004709: MAP kinase kinase kinase activity	7.10E-03
52	GO:0016832: aldehyde-lyase activity	8.58E-03
53	GO:0051753: mannan synthase activity	8.58E-03
54	GO:0016853: isomerase activity	9.49E-03
55	GO:0004871: signal transducer activity	9.75E-03
56	GO:0004722: protein serine/threonine phosphatase activity	1.06E-02
57	GO:0003777: microtubule motor activity	1.15E-02
58	GO:0004518: nuclease activity	1.17E-02
59	GO:0000156: phosphorelay response regulator activity	1.25E-02
60	GO:0051015: actin filament binding	1.25E-02
61	GO:0008173: RNA methyltransferase activity	1.36E-02
62	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.36E-02
63	GO:0008237: metallopeptidase activity	1.41E-02
64	GO:0016413: O-acetyltransferase activity	1.50E-02
65	GO:0004672: protein kinase activity	1.82E-02
66	GO:0005524: ATP binding	1.93E-02
67	GO:0003723: RNA binding	1.93E-02
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.18E-02
69	GO:0004222: metalloendopeptidase activity	2.29E-02
70	GO:0016301: kinase activity	2.36E-02
71	GO:0052689: carboxylic ester hydrolase activity	2.59E-02
72	GO:0009982: pseudouridine synthase activity	2.61E-02
73	GO:0003725: double-stranded RNA binding	2.61E-02
74	GO:0015266: protein channel activity	2.61E-02
75	GO:0016887: ATPase activity	2.73E-02
76	GO:0003774: motor activity	2.84E-02
77	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.84E-02
78	GO:0004190: aspartic-type endopeptidase activity	3.08E-02
79	GO:0008146: sulfotransferase activity	3.08E-02
80	GO:0003712: transcription cofactor activity	3.08E-02
81	GO:0051536: iron-sulfur cluster binding	3.59E-02
82	GO:0005345: purine nucleobase transmembrane transporter activity	3.85E-02
83	GO:0043565: sequence-specific DNA binding	3.98E-02
84	GO:0010333: terpene synthase activity	4.12E-02
85	GO:0008094: DNA-dependent ATPase activity	4.12E-02
86	GO:0033612: receptor serine/threonine kinase binding	4.12E-02
87	GO:0003964: RNA-directed DNA polymerase activity	4.12E-02
88	GO:0009055: electron carrier activity	4.37E-02
89	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.39E-02
90	GO:0030570: pectate lyase activity	4.67E-02
91	GO:0016298: lipase activity	4.72E-02
92	GO:0003690: double-stranded DNA binding	4.72E-02
93	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0032541: cortical endoplasmic reticulum	6.40E-04
3	GO:0000791: euchromatin	6.40E-04
4	GO:0009507: chloroplast	1.05E-03
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.38E-03
6	GO:0031357: integral component of chloroplast inner membrane	1.38E-03
7	GO:0030870: Mre11 complex	1.38E-03
8	GO:0030139: endocytic vesicle	2.27E-03
9	GO:0042765: GPI-anchor transamidase complex	2.27E-03
10	GO:0032585: multivesicular body membrane	3.30E-03
11	GO:0009898: cytoplasmic side of plasma membrane	4.45E-03
12	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.45E-03
13	GO:0000795: synaptonemal complex	5.72E-03
14	GO:0015629: actin cytoskeleton	6.39E-03
15	GO:0000815: ESCRT III complex	8.58E-03
16	GO:0009986: cell surface	1.02E-02
17	GO:0005886: plasma membrane	1.34E-02
18	GO:0009941: chloroplast envelope	1.61E-02
19	GO:0009534: chloroplast thylakoid	1.77E-02
20	GO:0016459: myosin complex	1.95E-02
21	GO:0005884: actin filament	2.16E-02
22	GO:0005578: proteinaceous extracellular matrix	2.61E-02
23	GO:0009508: plastid chromosome	2.61E-02
24	GO:0030095: chloroplast photosystem II	2.84E-02
25	GO:0009536: plastid	2.91E-02
26	GO:0005875: microtubule associated complex	3.33E-02
27	GO:0005856: cytoskeleton	3.82E-02
28	GO:0009654: photosystem II oxygen evolving complex	3.85E-02
29	GO:0009570: chloroplast stroma	4.07E-02
30	GO:0046658: anchored component of plasma membrane	4.47E-02
31	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.95E-02