co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
4	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
5	GO:0043972: histone H3-K23 acetylation	0.00E+00
6	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
7	GO:0044154: histone H3-K14 acetylation	0.00E+00
8	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.37E-04
9	GO:0006436: tryptophanyl-tRNA aminoacylation	2.48E-04
10	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.48E-04
11	GO:0051171: regulation of nitrogen compound metabolic process	2.48E-04
12	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.48E-04
13	GO:0043971: histone H3-K18 acetylation	2.48E-04
14	GO:0006435: threonyl-tRNA aminoacylation	5.49E-04
15	GO:0080005: photosystem stoichiometry adjustment	5.49E-04
16	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.49E-04
17	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.49E-04
18	GO:0048255: mRNA stabilization	5.49E-04
19	GO:0006013: mannose metabolic process	8.92E-04
20	GO:0001578: microtubule bundle formation	8.92E-04
21	GO:0009451: RNA modification	9.94E-04
22	GO:0009800: cinnamic acid biosynthetic process	1.27E-03
23	GO:0010306: rhamnogalacturonan II biosynthetic process	1.27E-03
24	GO:0010255: glucose mediated signaling pathway	1.27E-03
25	GO:0007020: microtubule nucleation	1.70E-03
26	GO:0015846: polyamine transport	1.70E-03
27	GO:0051322: anaphase	1.70E-03
28	GO:0048868: pollen tube development	2.15E-03
29	GO:0046785: microtubule polymerization	2.17E-03
30	GO:0016558: protein import into peroxisome matrix	2.17E-03
31	GO:0031365: N-terminal protein amino acid modification	2.17E-03
32	GO:0002229: defense response to oomycetes	2.64E-03
33	GO:0006655: phosphatidylglycerol biosynthetic process	2.67E-03
34	GO:0010190: cytochrome b6f complex assembly	2.67E-03
35	GO:0048827: phyllome development	2.67E-03
36	GO:0042549: photosystem II stabilization	2.67E-03
37	GO:0010315: auxin efflux	2.67E-03
38	GO:0006559: L-phenylalanine catabolic process	2.67E-03
39	GO:0048444: floral organ morphogenesis	3.21E-03
40	GO:0034389: lipid particle organization	3.21E-03
41	GO:0006401: RNA catabolic process	3.79E-03
42	GO:0009610: response to symbiotic fungus	3.79E-03
43	GO:0048528: post-embryonic root development	3.79E-03
44	GO:0006353: DNA-templated transcription, termination	4.39E-03
45	GO:0009704: de-etiolation	4.39E-03
46	GO:0010052: guard cell differentiation	5.03E-03
47	GO:0007389: pattern specification process	5.03E-03
48	GO:0044030: regulation of DNA methylation	5.03E-03
49	GO:0017004: cytochrome complex assembly	5.03E-03
50	GO:0006002: fructose 6-phosphate metabolic process	5.03E-03
51	GO:0022900: electron transport chain	5.03E-03
52	GO:0009657: plastid organization	5.03E-03
53	GO:0019432: triglyceride biosynthetic process	5.70E-03
54	GO:0008202: steroid metabolic process	6.40E-03
55	GO:0010380: regulation of chlorophyll biosynthetic process	6.40E-03
56	GO:0006415: translational termination	7.88E-03
57	GO:0009750: response to fructose	7.88E-03
58	GO:0016485: protein processing	7.88E-03
59	GO:0051707: response to other organism	8.13E-03
60	GO:0016024: CDP-diacylglycerol biosynthetic process	8.66E-03
61	GO:0009658: chloroplast organization	9.09E-03
62	GO:0010229: inflorescence development	9.47E-03
63	GO:0010540: basipetal auxin transport	1.03E-02
64	GO:0009934: regulation of meristem structural organization	1.03E-02
65	GO:0010020: chloroplast fission	1.03E-02
66	GO:0080188: RNA-directed DNA methylation	1.12E-02
67	GO:0080167: response to karrikin	1.20E-02
68	GO:0006863: purine nucleobase transport	1.21E-02
69	GO:0006071: glycerol metabolic process	1.21E-02
70	GO:0000162: tryptophan biosynthetic process	1.21E-02
71	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.25E-02
72	GO:0010187: negative regulation of seed germination	1.30E-02
73	GO:0006096: glycolytic process	1.30E-02
74	GO:0006468: protein phosphorylation	1.31E-02
75	GO:0043622: cortical microtubule organization	1.39E-02
76	GO:0010073: meristem maintenance	1.39E-02
77	GO:0051302: regulation of cell division	1.39E-02
78	GO:0006418: tRNA aminoacylation for protein translation	1.39E-02
79	GO:0009740: gibberellic acid mediated signaling pathway	1.47E-02
80	GO:0009793: embryo development ending in seed dormancy	1.54E-02
81	GO:0035428: hexose transmembrane transport	1.59E-02
82	GO:0016226: iron-sulfur cluster assembly	1.59E-02
83	GO:0051726: regulation of cell cycle	1.66E-02
84	GO:0009693: ethylene biosynthetic process	1.69E-02
85	GO:0046323: glucose import	2.12E-02
86	GO:0048825: cotyledon development	2.34E-02
87	GO:0009749: response to glucose	2.34E-02
88	GO:0008654: phospholipid biosynthetic process	2.34E-02
89	GO:0009851: auxin biosynthetic process	2.34E-02
90	GO:0006635: fatty acid beta-oxidation	2.46E-02
91	GO:0071281: cellular response to iron ion	2.70E-02
92	GO:0007623: circadian rhythm	2.71E-02
93	GO:0010252: auxin homeostasis	2.82E-02
94	GO:0009739: response to gibberellin	3.03E-02
95	GO:0000910: cytokinesis	3.07E-02
96	GO:0007166: cell surface receptor signaling pathway	3.10E-02
97	GO:0009911: positive regulation of flower development	3.19E-02
98	GO:0016126: sterol biosynthetic process	3.19E-02
99	GO:0010468: regulation of gene expression	3.24E-02
100	GO:0048481: plant ovule development	3.86E-02
101	GO:0008219: cell death	3.86E-02
102	GO:0009416: response to light stimulus	4.00E-02
103	GO:0000160: phosphorelay signal transduction system	4.00E-02
104	GO:0009834: plant-type secondary cell wall biogenesis	4.14E-02
105	GO:0007568: aging	4.28E-02
106	GO:0009910: negative regulation of flower development	4.28E-02
107	GO:0009853: photorespiration	4.56E-02
108	GO:0007049: cell cycle	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0019808: polyamine binding	0.00E+00
3	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
4	GO:0008859: exoribonuclease II activity	0.00E+00
5	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.48E-04
6	GO:0004830: tryptophan-tRNA ligase activity	2.48E-04
7	GO:0017091: AU-rich element binding	2.48E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.48E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.48E-04
10	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	5.49E-04
11	GO:0004829: threonine-tRNA ligase activity	5.49E-04
12	GO:0004047: aminomethyltransferase activity	5.49E-04
13	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	5.49E-04
14	GO:0004672: protein kinase activity	6.19E-04
15	GO:0030267: glyoxylate reductase (NADP) activity	8.92E-04
16	GO:0016805: dipeptidase activity	8.92E-04
17	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.92E-04
18	GO:0045548: phenylalanine ammonia-lyase activity	8.92E-04
19	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.27E-03
20	GO:0000254: C-4 methylsterol oxidase activity	1.27E-03
21	GO:0010385: double-stranded methylated DNA binding	1.70E-03
22	GO:0019901: protein kinase binding	2.47E-03
23	GO:0004605: phosphatidate cytidylyltransferase activity	2.67E-03
24	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.21E-03
25	GO:0004144: diacylglycerol O-acyltransferase activity	3.21E-03
26	GO:0004559: alpha-mannosidase activity	3.21E-03
27	GO:0008237: metallopeptidase activity	3.40E-03
28	GO:0019899: enzyme binding	3.79E-03
29	GO:0008235: metalloexopeptidase activity	3.79E-03
30	GO:0003872: 6-phosphofructokinase activity	3.79E-03
31	GO:0008142: oxysterol binding	5.03E-03
32	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.48E-03
33	GO:0003747: translation release factor activity	5.70E-03
34	GO:0009672: auxin:proton symporter activity	6.40E-03
35	GO:0015020: glucuronosyltransferase activity	7.12E-03
36	GO:0004713: protein tyrosine kinase activity	7.12E-03
37	GO:0008327: methyl-CpG binding	7.88E-03
38	GO:0004177: aminopeptidase activity	7.88E-03
39	GO:0051537: 2 iron, 2 sulfur cluster binding	8.79E-03
40	GO:0043621: protein self-association	8.79E-03
41	GO:0010329: auxin efflux transmembrane transporter activity	9.47E-03
42	GO:0009982: pseudouridine synthase activity	9.47E-03
43	GO:0000175: 3'-5'-exoribonuclease activity	9.47E-03
44	GO:0016301: kinase activity	9.66E-03
45	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.03E-02
46	GO:0004857: enzyme inhibitor activity	1.30E-02
47	GO:0005345: purine nucleobase transmembrane transporter activity	1.39E-02
48	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.43E-02
49	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.43E-02
50	GO:0004176: ATP-dependent peptidase activity	1.49E-02
51	GO:0004540: ribonuclease activity	1.49E-02
52	GO:0004812: aminoacyl-tRNA ligase activity	1.90E-02
53	GO:0004402: histone acetyltransferase activity	2.01E-02
54	GO:0001085: RNA polymerase II transcription factor binding	2.12E-02
55	GO:0004519: endonuclease activity	2.18E-02
56	GO:0005355: glucose transmembrane transporter activity	2.23E-02
57	GO:0005524: ATP binding	2.25E-02
58	GO:0015144: carbohydrate transmembrane transporter activity	2.35E-02
59	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.53E-02
60	GO:0005351: sugar:proton symporter activity	2.65E-02
61	GO:0004674: protein serine/threonine kinase activity	2.66E-02
62	GO:0000156: phosphorelay response regulator activity	2.70E-02
63	GO:0008017: microtubule binding	2.84E-02
64	GO:0008194: UDP-glycosyltransferase activity	3.03E-02
65	GO:0004721: phosphoprotein phosphatase activity	3.59E-02
66	GO:0004806: triglyceride lipase activity	3.59E-02
67	GO:0046982: protein heterodimerization activity	4.11E-02
68	GO:0004222: metalloendopeptidase activity	4.14E-02
69	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.28E-02
70	GO:0003993: acid phosphatase activity	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009507: chloroplast	8.66E-05
4	GO:0010370: perinucleolar chromocenter	2.48E-04
5	GO:0045254: pyruvate dehydrogenase complex	5.49E-04
6	GO:0000178: exosome (RNase complex)	2.17E-03
7	GO:0055035: plastid thylakoid membrane	2.17E-03
8	GO:0072686: mitotic spindle	2.17E-03
9	GO:0005945: 6-phosphofructokinase complex	2.17E-03
10	GO:0010005: cortical microtubule, transverse to long axis	3.21E-03
11	GO:0009707: chloroplast outer membrane	4.97E-03
12	GO:0005811: lipid particle	5.03E-03
13	GO:0005720: nuclear heterochromatin	5.70E-03
14	GO:0005819: spindle	6.88E-03
15	GO:0055028: cortical microtubule	7.12E-03
16	GO:0009570: chloroplast stroma	8.73E-03
17	GO:0005938: cell cortex	9.47E-03
18	GO:0016602: CCAAT-binding factor complex	9.47E-03
19	GO:0009574: preprophase band	9.47E-03
20	GO:0045271: respiratory chain complex I	1.39E-02
21	GO:0009505: plant-type cell wall	1.48E-02
22	GO:0005789: endoplasmic reticulum membrane	2.08E-02
23	GO:0005770: late endosome	2.12E-02
24	GO:0043231: intracellular membrane-bounded organelle	2.22E-02
25	GO:0005802: trans-Golgi network	2.26E-02
26	GO:0005759: mitochondrial matrix	2.47E-02
27	GO:0005768: endosome	2.73E-02
28	GO:0000932: P-body	3.19E-02
29	GO:0005667: transcription factor complex	3.46E-02
30	GO:0009535: chloroplast thylakoid membrane	3.92E-02
31	GO:0005874: microtubule	5.00E-02