co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
2	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
3	GO:0005993: trehalose catabolic process	0.00E+00
4	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
5	GO:0052386: cell wall thickening	0.00E+00
6	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
7	GO:0080149: sucrose induced translational repression	0.00E+00
8	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
9	GO:1902009: positive regulation of toxin transport	0.00E+00
10	GO:0030968: endoplasmic reticulum unfolded protein response	6.97E-06
11	GO:0006457: protein folding	6.10E-05
12	GO:0016192: vesicle-mediated transport	9.94E-05
13	GO:0015031: protein transport	1.03E-04
14	GO:0006886: intracellular protein transport	1.46E-04
15	GO:0006605: protein targeting	2.25E-04
16	GO:0006623: protein targeting to vacuole	2.42E-04
17	GO:1903648: positive regulation of chlorophyll catabolic process	2.46E-04
18	GO:0000077: DNA damage checkpoint	2.46E-04
19	GO:0042350: GDP-L-fucose biosynthetic process	2.46E-04
20	GO:1990641: response to iron ion starvation	2.46E-04
21	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.46E-04
22	GO:1990022: RNA polymerase III complex localization to nucleus	2.46E-04
23	GO:0043182: vacuolar sequestering of sodium ion	2.46E-04
24	GO:0044376: RNA polymerase II complex import to nucleus	2.46E-04
25	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.44E-04
26	GO:0042853: L-alanine catabolic process	5.44E-04
27	GO:0040020: regulation of meiotic nuclear division	5.44E-04
28	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	5.44E-04
29	GO:0006101: citrate metabolic process	5.44E-04
30	GO:0000266: mitochondrial fission	6.18E-04
31	GO:0006065: UDP-glucuronate biosynthetic process	8.83E-04
32	GO:0032504: multicellular organism reproduction	8.83E-04
33	GO:0009410: response to xenobiotic stimulus	8.83E-04
34	GO:0052546: cell wall pectin metabolic process	8.83E-04
35	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	8.83E-04
36	GO:0034976: response to endoplasmic reticulum stress	9.77E-04
37	GO:0030150: protein import into mitochondrial matrix	1.08E-03
38	GO:0007275: multicellular organism development	1.20E-03
39	GO:0055070: copper ion homeostasis	1.26E-03
40	GO:0055089: fatty acid homeostasis	1.26E-03
41	GO:0051639: actin filament network formation	1.26E-03
42	GO:0072334: UDP-galactose transmembrane transport	1.26E-03
43	GO:0009226: nucleotide-sugar biosynthetic process	1.26E-03
44	GO:0071323: cellular response to chitin	1.26E-03
45	GO:0051764: actin crosslink formation	1.68E-03
46	GO:1902584: positive regulation of response to water deprivation	1.68E-03
47	GO:0006621: protein retention in ER lumen	1.68E-03
48	GO:1901002: positive regulation of response to salt stress	1.68E-03
49	GO:0006097: glyoxylate cycle	2.15E-03
50	GO:0009229: thiamine diphosphate biosynthetic process	2.15E-03
51	GO:0045927: positive regulation of growth	2.15E-03
52	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.15E-03
53	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.65E-03
54	GO:0047484: regulation of response to osmotic stress	2.65E-03
55	GO:1900425: negative regulation of defense response to bacterium	2.65E-03
56	GO:0009228: thiamine biosynthetic process	2.65E-03
57	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.18E-03
58	GO:0034389: lipid particle organization	3.18E-03
59	GO:0017148: negative regulation of translation	3.18E-03
60	GO:0010044: response to aluminum ion	3.75E-03
61	GO:0006744: ubiquinone biosynthetic process	3.75E-03
62	GO:0080186: developmental vegetative growth	3.75E-03
63	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.75E-03
64	GO:2000014: regulation of endosperm development	3.75E-03
65	GO:1900057: positive regulation of leaf senescence	3.75E-03
66	GO:0006333: chromatin assembly or disassembly	3.75E-03
67	GO:0006906: vesicle fusion	4.20E-03
68	GO:0045010: actin nucleation	4.35E-03
69	GO:0006102: isocitrate metabolic process	4.35E-03
70	GO:0016559: peroxisome fission	4.35E-03
71	GO:0007155: cell adhesion	4.35E-03
72	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.35E-03
73	GO:1900150: regulation of defense response to fungus	4.35E-03
74	GO:0009408: response to heat	4.57E-03
75	GO:0006002: fructose 6-phosphate metabolic process	4.98E-03
76	GO:0015996: chlorophyll catabolic process	4.98E-03
77	GO:0010417: glucuronoxylan biosynthetic process	4.98E-03
78	GO:0000902: cell morphogenesis	5.65E-03
79	GO:0015780: nucleotide-sugar transport	5.65E-03
80	GO:0009835: fruit ripening	5.65E-03
81	GO:0007338: single fertilization	5.65E-03
82	GO:0010332: response to gamma radiation	5.65E-03
83	GO:0090332: stomatal closure	6.33E-03
84	GO:0009086: methionine biosynthetic process	6.33E-03
85	GO:0008202: steroid metabolic process	6.33E-03
86	GO:0009688: abscisic acid biosynthetic process	7.06E-03
87	GO:0000103: sulfate assimilation	7.06E-03
88	GO:0006913: nucleocytoplasmic transport	7.80E-03
89	GO:0051707: response to other organism	8.02E-03
90	GO:0000209: protein polyubiquitination	8.34E-03
91	GO:0045037: protein import into chloroplast stroma	8.58E-03
92	GO:0030036: actin cytoskeleton organization	9.38E-03
93	GO:2000012: regulation of auxin polar transport	9.38E-03
94	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.71E-03
95	GO:0034605: cellular response to heat	1.02E-02
96	GO:0002237: response to molecule of bacterial origin	1.02E-02
97	GO:0007034: vacuolar transport	1.02E-02
98	GO:0007015: actin filament organization	1.02E-02
99	GO:0009738: abscisic acid-activated signaling pathway	1.04E-02
100	GO:0007033: vacuole organization	1.11E-02
101	GO:0010053: root epidermal cell differentiation	1.11E-02
102	GO:0007030: Golgi organization	1.11E-02
103	GO:0009825: multidimensional cell growth	1.11E-02
104	GO:0070588: calcium ion transmembrane transport	1.11E-02
105	GO:0000162: tryptophan biosynthetic process	1.20E-02
106	GO:0006636: unsaturated fatty acid biosynthetic process	1.20E-02
107	GO:0006096: glycolytic process	1.28E-02
108	GO:0009863: salicylic acid mediated signaling pathway	1.29E-02
109	GO:0051017: actin filament bundle assembly	1.29E-02
110	GO:0006289: nucleotide-excision repair	1.29E-02
111	GO:0008299: isoprenoid biosynthetic process	1.38E-02
112	GO:0006334: nucleosome assembly	1.47E-02
113	GO:0019915: lipid storage	1.47E-02
114	GO:0048278: vesicle docking	1.47E-02
115	GO:0009553: embryo sac development	1.50E-02
116	GO:0031348: negative regulation of defense response	1.57E-02
117	GO:0009814: defense response, incompatible interaction	1.57E-02
118	GO:0030433: ubiquitin-dependent ERAD pathway	1.57E-02
119	GO:0009411: response to UV	1.67E-02
120	GO:0010584: pollen exine formation	1.77E-02
121	GO:0009306: protein secretion	1.77E-02
122	GO:0010051: xylem and phloem pattern formation	1.99E-02
123	GO:0010118: stomatal movement	1.99E-02
124	GO:0009058: biosynthetic process	2.04E-02
125	GO:0010197: polar nucleus fusion	2.09E-02
126	GO:0010182: sugar mediated signaling pathway	2.09E-02
127	GO:0009960: endosperm development	2.09E-02
128	GO:0045489: pectin biosynthetic process	2.09E-02
129	GO:0006662: glycerol ether metabolic process	2.09E-02
130	GO:0046686: response to cadmium ion	2.10E-02
131	GO:0061025: membrane fusion	2.21E-02
132	GO:0009790: embryo development	2.26E-02
133	GO:0006891: intra-Golgi vesicle-mediated transport	2.43E-02
134	GO:0016032: viral process	2.55E-02
135	GO:0009567: double fertilization forming a zygote and endosperm	2.79E-02
136	GO:0006470: protein dephosphorylation	3.06E-02
137	GO:0006979: response to oxidative stress	3.16E-02
138	GO:0001666: response to hypoxia	3.16E-02
139	GO:0008380: RNA splicing	3.19E-02
140	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.29E-02
141	GO:0009816: defense response to bacterium, incompatible interaction	3.29E-02
142	GO:0048767: root hair elongation	3.96E-02
143	GO:0006499: N-terminal protein myristoylation	4.10E-02
144	GO:0000724: double-strand break repair via homologous recombination	4.38E-02
145	GO:0009860: pollen tube growth	4.44E-02
146	GO:0045087: innate immune response	4.52E-02
147	GO:0016051: carbohydrate biosynthetic process	4.52E-02
148	GO:0006099: tricarboxylic acid cycle	4.66E-02
149	GO:0045893: positive regulation of transcription, DNA-templated	4.66E-02
150	GO:0034599: cellular response to oxidative stress	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0034338: short-chain carboxylesterase activity	0.00E+00
2	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
3	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
4	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
5	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
6	GO:0050334: thiaminase activity	0.00E+00
7	GO:0005046: KDEL sequence binding	0.00E+00
8	GO:0061133: endopeptidase activator activity	0.00E+00
9	GO:0005460: UDP-glucose transmembrane transporter activity	2.31E-05
10	GO:0005459: UDP-galactose transmembrane transporter activity	6.67E-05
11	GO:0008320: protein transmembrane transporter activity	1.77E-04
12	GO:0050577: GDP-L-fucose synthase activity	2.46E-04
13	GO:0015927: trehalase activity	2.46E-04
14	GO:1990381: ubiquitin-specific protease binding	2.46E-04
15	GO:0030942: endoplasmic reticulum signal peptide binding	2.46E-04
16	GO:0102293: pheophytinase b activity	2.46E-04
17	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.46E-04
18	GO:0009000: selenocysteine lyase activity	2.46E-04
19	GO:0051082: unfolded protein binding	4.07E-04
20	GO:0047746: chlorophyllase activity	5.44E-04
21	GO:0003994: aconitate hydratase activity	5.44E-04
22	GO:0050347: trans-octaprenyltranstransferase activity	5.44E-04
23	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	5.44E-04
24	GO:0000774: adenyl-nucleotide exchange factor activity	5.44E-04
25	GO:0032934: sterol binding	5.44E-04
26	GO:0048531: beta-1,3-galactosyltransferase activity	5.44E-04
27	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.83E-04
28	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	8.83E-04
29	GO:0000975: regulatory region DNA binding	8.83E-04
30	GO:0035529: NADH pyrophosphatase activity	1.26E-03
31	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.26E-03
32	GO:0030527: structural constituent of chromatin	1.26E-03
33	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.68E-03
34	GO:0004659: prenyltransferase activity	1.68E-03
35	GO:0004834: tryptophan synthase activity	1.68E-03
36	GO:0046923: ER retention sequence binding	1.68E-03
37	GO:0070628: proteasome binding	1.68E-03
38	GO:0030151: molybdenum ion binding	2.15E-03
39	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.15E-03
40	GO:0004623: phospholipase A2 activity	2.15E-03
41	GO:0047631: ADP-ribose diphosphatase activity	2.15E-03
42	GO:0000210: NAD+ diphosphatase activity	2.65E-03
43	GO:0004656: procollagen-proline 4-dioxygenase activity	3.18E-03
44	GO:0003872: 6-phosphofructokinase activity	3.75E-03
45	GO:0030170: pyridoxal phosphate binding	3.88E-03
46	GO:0008312: 7S RNA binding	4.35E-03
47	GO:0052747: sinapyl alcohol dehydrogenase activity	4.35E-03
48	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.35E-03
49	GO:0008142: oxysterol binding	4.98E-03
50	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.65E-03
51	GO:0003746: translation elongation factor activity	6.21E-03
52	GO:0030955: potassium ion binding	6.33E-03
53	GO:0004743: pyruvate kinase activity	6.33E-03
54	GO:0000149: SNARE binding	6.78E-03
55	GO:0030234: enzyme regulator activity	7.06E-03
56	GO:0004161: dimethylallyltranstransferase activity	7.80E-03
57	GO:0005484: SNAP receptor activity	8.02E-03
58	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.58E-03
59	GO:0015198: oligopeptide transporter activity	8.58E-03
60	GO:0008378: galactosyltransferase activity	8.58E-03
61	GO:0005198: structural molecule activity	9.01E-03
62	GO:0005388: calcium-transporting ATPase activity	9.38E-03
63	GO:0051287: NAD binding	9.71E-03
64	GO:0004175: endopeptidase activity	1.02E-02
65	GO:0004867: serine-type endopeptidase inhibitor activity	1.11E-02
66	GO:0008061: chitin binding	1.11E-02
67	GO:0003712: transcription cofactor activity	1.11E-02
68	GO:0004725: protein tyrosine phosphatase activity	1.20E-02
69	GO:0051536: iron-sulfur cluster binding	1.29E-02
70	GO:0031418: L-ascorbic acid binding	1.29E-02
71	GO:0043130: ubiquitin binding	1.29E-02
72	GO:0051087: chaperone binding	1.38E-02
73	GO:0022857: transmembrane transporter activity	1.45E-02
74	GO:0004298: threonine-type endopeptidase activity	1.47E-02
75	GO:0042803: protein homodimerization activity	1.57E-02
76	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.57E-02
77	GO:0003756: protein disulfide isomerase activity	1.77E-02
78	GO:0047134: protein-disulfide reductase activity	1.88E-02
79	GO:0005102: receptor binding	1.88E-02
80	GO:0016758: transferase activity, transferring hexosyl groups	1.89E-02
81	GO:0003924: GTPase activity	1.92E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	2.21E-02
83	GO:0016853: isomerase activity	2.21E-02
84	GO:0050662: coenzyme binding	2.21E-02
85	GO:0008565: protein transporter activity	2.32E-02
86	GO:0004872: receptor activity	2.32E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.67E-02
88	GO:0051015: actin filament binding	2.67E-02
89	GO:0005509: calcium ion binding	2.77E-02
90	GO:0004806: triglyceride lipase activity	3.55E-02
91	GO:0030247: polysaccharide binding	3.55E-02
92	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-02
93	GO:0004222: metalloendopeptidase activity	4.10E-02
94	GO:0050897: cobalt ion binding	4.24E-02
95	GO:0003682: chromatin binding	4.36E-02
96	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.52E-02
97	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005789: endoplasmic reticulum membrane	1.02E-06
2	GO:0005783: endoplasmic reticulum	1.84E-05
3	GO:0005788: endoplasmic reticulum lumen	3.70E-05
4	GO:0005801: cis-Golgi network	1.34E-04
5	GO:0000836: Hrd1p ubiquitin ligase complex	2.46E-04
6	GO:0044322: endoplasmic reticulum quality control compartment	2.46E-04
7	GO:0001405: presequence translocase-associated import motor	2.46E-04
8	GO:0030665: clathrin-coated vesicle membrane	3.99E-04
9	GO:0017119: Golgi transport complex	4.67E-04
10	GO:0030134: ER to Golgi transport vesicle	5.44E-04
11	GO:0030176: integral component of endoplasmic reticulum membrane	8.79E-04
12	GO:0031902: late endosome membrane	1.02E-03
13	GO:0016021: integral component of membrane	1.18E-03
14	GO:0032432: actin filament bundle	1.26E-03
15	GO:0030658: transport vesicle membrane	1.26E-03
16	GO:0036513: Derlin-1 retrotranslocation complex	1.26E-03
17	GO:0005774: vacuolar membrane	1.66E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.68E-03
19	GO:0005945: 6-phosphofructokinase complex	2.15E-03
20	GO:0005794: Golgi apparatus	2.39E-03
21	GO:0016592: mediator complex	2.78E-03
22	GO:0005885: Arp2/3 protein complex	3.18E-03
23	GO:0030173: integral component of Golgi membrane	3.18E-03
24	GO:0016272: prefoldin complex	3.18E-03
25	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.75E-03
26	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.98E-03
27	GO:0005811: lipid particle	4.98E-03
28	GO:0000139: Golgi membrane	5.29E-03
29	GO:0031901: early endosome membrane	5.65E-03
30	GO:0008540: proteasome regulatory particle, base subcomplex	6.33E-03
31	GO:0031201: SNARE complex	7.39E-03
32	GO:0008541: proteasome regulatory particle, lid subcomplex	7.80E-03
33	GO:0005884: actin filament	7.80E-03
34	GO:0000502: proteasome complex	1.08E-02
35	GO:0005795: Golgi stack	1.11E-02
36	GO:0005773: vacuole	1.25E-02
37	GO:0005737: cytoplasm	1.46E-02
38	GO:0005839: proteasome core complex	1.47E-02
39	GO:0005741: mitochondrial outer membrane	1.47E-02
40	GO:0005623: cell	1.99E-02
41	GO:0000785: chromatin	2.55E-02
42	GO:0005768: endosome	2.67E-02
43	GO:0032580: Golgi cisterna membrane	2.79E-02
44	GO:0005887: integral component of plasma membrane	2.82E-02
45	GO:0005778: peroxisomal membrane	2.91E-02
46	GO:0005615: extracellular space	2.99E-02
47	GO:0000325: plant-type vacuole	4.24E-02
48	GO:0005874: microtubule	4.93E-02