Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031930: mitochondria-nucleus signaling pathway1.00E-05
2GO:0032469: endoplasmic reticulum calcium ion homeostasis4.88E-05
3GO:0042539: hypotonic salinity response4.88E-05
4GO:0034975: protein folding in endoplasmic reticulum4.88E-05
5GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway4.88E-05
6GO:0007034: vacuolar transport8.25E-05
7GO:0009266: response to temperature stimulus8.25E-05
8GO:0043066: negative regulation of apoptotic process1.20E-04
9GO:0019725: cellular homeostasis1.20E-04
10GO:1902066: regulation of cell wall pectin metabolic process1.20E-04
11GO:0048586: regulation of long-day photoperiodism, flowering2.06E-04
12GO:0032922: circadian regulation of gene expression2.06E-04
13GO:0061158: 3'-UTR-mediated mRNA destabilization2.06E-04
14GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process2.06E-04
15GO:1901672: positive regulation of systemic acquired resistance2.06E-04
16GO:0043967: histone H4 acetylation3.01E-04
17GO:0010104: regulation of ethylene-activated signaling pathway3.01E-04
18GO:0006904: vesicle docking involved in exocytosis4.00E-04
19GO:0007112: male meiosis cytokinesis4.04E-04
20GO:0009247: glycolipid biosynthetic process5.13E-04
21GO:0001731: formation of translation preinitiation complex6.29E-04
22GO:0009861: jasmonic acid and ethylene-dependent systemic resistance7.50E-04
23GO:0000911: cytokinesis by cell plate formation7.50E-04
24GO:0009423: chorismate biosynthetic process7.50E-04
25GO:0046470: phosphatidylcholine metabolic process8.75E-04
26GO:0019375: galactolipid biosynthetic process1.01E-03
27GO:0006491: N-glycan processing1.01E-03
28GO:0006972: hyperosmotic response1.14E-03
29GO:0006486: protein glycosylation1.23E-03
30GO:0051865: protein autoubiquitination1.28E-03
31GO:0010112: regulation of systemic acquired resistance1.28E-03
32GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.43E-03
33GO:0015031: protein transport1.57E-03
34GO:0009870: defense response signaling pathway, resistance gene-dependent1.59E-03
35GO:0009073: aromatic amino acid family biosynthetic process1.75E-03
36GO:0006446: regulation of translational initiation2.26E-03
37GO:0006487: protein N-linked glycosylation2.81E-03
38GO:0006338: chromatin remodeling2.81E-03
39GO:0045333: cellular respiration2.81E-03
40GO:0043622: cortical microtubule organization3.01E-03
41GO:2000022: regulation of jasmonic acid mediated signaling pathway3.41E-03
42GO:0031348: negative regulation of defense response3.41E-03
43GO:0009306: protein secretion3.82E-03
44GO:0051028: mRNA transport4.04E-03
45GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.04E-03
46GO:0006885: regulation of pH4.48E-03
47GO:0006970: response to osmotic stress4.90E-03
48GO:0048510: regulation of timing of transition from vegetative to reproductive phase5.18E-03
49GO:0007264: small GTPase mediated signal transduction5.42E-03
50GO:0006464: cellular protein modification process5.91E-03
51GO:0045892: negative regulation of transcription, DNA-templated6.85E-03
52GO:0009408: response to heat8.31E-03
53GO:0006499: N-terminal protein myristoylation8.60E-03
54GO:0009409: response to cold8.64E-03
55GO:0048364: root development8.67E-03
56GO:0010043: response to zinc ion8.88E-03
57GO:0009631: cold acclimation8.88E-03
58GO:0006887: exocytosis1.07E-02
59GO:0051707: response to other organism1.13E-02
60GO:0042546: cell wall biogenesis1.16E-02
61GO:0006812: cation transport1.33E-02
62GO:0042538: hyperosmotic salinity response1.33E-02
63GO:0006813: potassium ion transport1.40E-02
64GO:0009738: abscisic acid-activated signaling pathway1.43E-02
65GO:0009737: response to abscisic acid1.54E-02
66GO:0009626: plant-type hypersensitive response1.65E-02
67GO:0009620: response to fungus1.68E-02
68GO:0018105: peptidyl-serine phosphorylation1.83E-02
69GO:0006396: RNA processing1.83E-02
70GO:0009845: seed germination2.23E-02
71GO:0016567: protein ubiquitination2.41E-02
72GO:0016036: cellular response to phosphate starvation2.52E-02
73GO:0006470: protein dephosphorylation2.91E-02
74GO:0009414: response to water deprivation2.93E-02
75GO:0010468: regulation of gene expression3.00E-02
76GO:0042742: defense response to bacterium3.00E-02
77GO:0010200: response to chitin4.31E-02
78GO:0016192: vesicle-mediated transport4.36E-02
79GO:0046777: protein autophosphorylation4.41E-02
RankGO TermAdjusted P value
1GO:0004107: chorismate synthase activity0.00E+00
2GO:0046481: digalactosyldiacylglycerol synthase activity4.88E-05
3GO:1990188: euchromatin binding4.88E-05
4GO:0035250: UDP-galactosyltransferase activity3.01E-04
5GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity3.01E-04
6GO:0009916: alternative oxidase activity4.04E-04
7GO:0008641: small protein activating enzyme activity5.13E-04
8GO:0003730: mRNA 3'-UTR binding7.50E-04
9GO:0004559: alpha-mannosidase activity7.50E-04
10GO:0004525: ribonuclease III activity1.01E-03
11GO:0004630: phospholipase D activity1.14E-03
12GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity1.14E-03
13GO:0005543: phospholipid binding1.75E-03
14GO:0008559: xenobiotic-transporting ATPase activity1.75E-03
15GO:0008378: galactosyltransferase activity1.91E-03
16GO:0031072: heat shock protein binding2.08E-03
17GO:0005262: calcium channel activity2.08E-03
18GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.08E-03
19GO:0051087: chaperone binding3.01E-03
20GO:0004707: MAP kinase activity3.20E-03
21GO:0003756: protein disulfide isomerase activity3.82E-03
22GO:0005451: monovalent cation:proton antiporter activity4.26E-03
23GO:0005525: GTP binding4.52E-03
24GO:0015299: solute:proton antiporter activity4.71E-03
25GO:0010181: FMN binding4.71E-03
26GO:0004872: receptor activity4.94E-03
27GO:0005509: calcium ion binding5.31E-03
28GO:0015385: sodium:proton antiporter activity5.66E-03
29GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.66E-03
30GO:0008375: acetylglucosaminyltransferase activity7.20E-03
31GO:0009931: calcium-dependent protein serine/threonine kinase activity7.20E-03
32GO:0004683: calmodulin-dependent protein kinase activity7.48E-03
33GO:0003924: GTPase activity8.31E-03
34GO:0004842: ubiquitin-protein transferase activity8.87E-03
35GO:0046872: metal ion binding1.54E-02
36GO:0016874: ligase activity1.72E-02
37GO:0051082: unfolded protein binding1.79E-02
38GO:0015035: protein disulfide oxidoreductase activity1.83E-02
39GO:0016758: transferase activity, transferring hexosyl groups2.06E-02
40GO:0008565: protein transporter activity2.39E-02
41GO:0016757: transferase activity, transferring glycosyl groups2.77E-02
42GO:0008194: UDP-glycosyltransferase activity2.87E-02
43GO:0003743: translation initiation factor activity2.96E-02
44GO:0044212: transcription regulatory region DNA binding3.00E-02
45GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.14E-02
46GO:0003676: nucleic acid binding3.51E-02
47GO:0000287: magnesium ion binding3.56E-02
48GO:0043531: ADP binding3.86E-02
49GO:0004672: protein kinase activity4.39E-02
RankGO TermAdjusted P value
1GO:0030139: endocytic vesicle2.06E-04
2GO:0016282: eukaryotic 43S preinitiation complex6.29E-04
3GO:0033290: eukaryotic 48S preinitiation complex7.50E-04
4GO:0000815: ESCRT III complex7.50E-04
5GO:0000123: histone acetyltransferase complex8.75E-04
6GO:0005768: endosome9.39E-04
7GO:0030176: integral component of endoplasmic reticulum membrane2.44E-03
8GO:0070469: respiratory chain3.01E-03
9GO:0005770: late endosome4.48E-03
10GO:0009504: cell plate4.94E-03
11GO:0000145: exocyst5.42E-03
12GO:0009707: chloroplast outer membrane8.03E-03
13GO:0000325: plant-type vacuole8.88E-03
14GO:0031902: late endosome membrane1.07E-02
15GO:0090406: pollen tube1.13E-02
16GO:0012505: endomembrane system1.76E-02
17GO:0005654: nucleoplasm2.06E-02
18GO:0005737: cytoplasm2.17E-02
19GO:0005794: Golgi apparatus2.98E-02
20GO:0000139: Golgi membrane4.05E-02
21GO:0005829: cytosol4.07E-02
22GO:0005874: microtubule4.11E-02
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Gene type



Gene DE type