co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0061062: regulation of nematode larval development	3.31E-07
3	GO:0046506: sulfolipid biosynthetic process	7.75E-05
4	GO:0032958: inositol phosphate biosynthetic process	7.75E-05
5	GO:0009733: response to auxin	1.31E-04
6	GO:0080005: photosystem stoichiometry adjustment	1.85E-04
7	GO:0048575: short-day photoperiodism, flowering	3.11E-04
8	GO:0090506: axillary shoot meristem initiation	3.11E-04
9	GO:0009686: gibberellin biosynthetic process	3.33E-04
10	GO:0048364: root development	4.27E-04
11	GO:0016556: mRNA modification	4.49E-04
12	GO:0010321: regulation of vegetative phase change	4.49E-04
13	GO:0006020: inositol metabolic process	4.49E-04
14	GO:0042991: transcription factor import into nucleus	5.98E-04
15	GO:0009247: glycolipid biosynthetic process	7.57E-04
16	GO:0006351: transcription, DNA-templated	9.20E-04
17	GO:0006694: steroid biosynthetic process	1.10E-03
18	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.10E-03
19	GO:0048366: leaf development	1.44E-03
20	GO:0042255: ribosome assembly	1.48E-03
21	GO:0006353: DNA-templated transcription, termination	1.48E-03
22	GO:0009704: de-etiolation	1.48E-03
23	GO:0048589: developmental growth	1.91E-03
24	GO:0009664: plant-type cell wall organization	2.06E-03
25	GO:1900865: chloroplast RNA modification	2.14E-03
26	GO:0031425: chloroplast RNA processing	2.14E-03
27	GO:0009641: shade avoidance	2.37E-03
28	GO:0006949: syncytium formation	2.37E-03
29	GO:0008285: negative regulation of cell proliferation	2.61E-03
30	GO:0071555: cell wall organization	2.76E-03
31	GO:0005983: starch catabolic process	2.86E-03
32	GO:0010152: pollen maturation	2.86E-03
33	GO:0012501: programmed cell death	2.86E-03
34	GO:0009740: gibberellic acid mediated signaling pathway	2.94E-03
35	GO:0009624: response to nematode	3.12E-03
36	GO:0010102: lateral root morphogenesis	3.12E-03
37	GO:0009767: photosynthetic electron transport chain	3.12E-03
38	GO:0010223: secondary shoot formation	3.38E-03
39	GO:0009887: animal organ morphogenesis	3.38E-03
40	GO:0006355: regulation of transcription, DNA-templated	3.51E-03
41	GO:0009734: auxin-activated signaling pathway	3.88E-03
42	GO:0006863: purine nucleobase transport	3.94E-03
43	GO:0080147: root hair cell development	4.23E-03
44	GO:0019953: sexual reproduction	4.52E-03
45	GO:0016114: terpenoid biosynthetic process	4.82E-03
46	GO:0001944: vasculature development	5.45E-03
47	GO:0048443: stamen development	5.77E-03
48	GO:0009739: response to gibberellin	6.00E-03
49	GO:0006470: protein dephosphorylation	6.13E-03
50	GO:0000271: polysaccharide biosynthetic process	6.44E-03
51	GO:0045489: pectin biosynthetic process	6.78E-03
52	GO:0048825: cotyledon development	7.49E-03
53	GO:0009826: unidimensional cell growth	7.99E-03
54	GO:0032502: developmental process	8.22E-03
55	GO:0030163: protein catabolic process	8.59E-03
56	GO:0019760: glucosinolate metabolic process	8.97E-03
57	GO:0009828: plant-type cell wall loosening	8.97E-03
58	GO:0016126: sterol biosynthetic process	1.02E-02
59	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.07E-02
60	GO:0048573: photoperiodism, flowering	1.14E-02
61	GO:0016311: dephosphorylation	1.18E-02
62	GO:0009817: defense response to fungus, incompatible interaction	1.22E-02
63	GO:0045892: negative regulation of transcription, DNA-templated	1.25E-02
64	GO:0016051: carbohydrate biosynthetic process	1.45E-02
65	GO:0006839: mitochondrial transport	1.59E-02
66	GO:0009873: ethylene-activated signaling pathway	1.97E-02
67	GO:0009736: cytokinin-activated signaling pathway	2.14E-02
68	GO:0009908: flower development	2.45E-02
69	GO:0048367: shoot system development	2.47E-02
70	GO:0009742: brassinosteroid mediated signaling pathway	2.87E-02
71	GO:0051301: cell division	2.95E-02
72	GO:0007275: multicellular organism development	2.98E-02
73	GO:0016036: cellular response to phosphate starvation	3.86E-02
74	GO:0040008: regulation of growth	3.93E-02
75	GO:0010228: vegetative to reproductive phase transition of meristem	4.19E-02
76	GO:0008380: RNA splicing	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0046510: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0000828: inositol hexakisphosphate kinase activity	7.75E-05
4	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	7.75E-05
5	GO:0000829: inositol heptakisphosphate kinase activity	7.75E-05
6	GO:0019156: isoamylase activity	1.85E-04
7	GO:0017022: myosin binding	1.85E-04
8	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.85E-04
9	GO:0045544: gibberellin 20-oxidase activity	4.49E-04
10	GO:0004506: squalene monooxygenase activity	5.98E-04
11	GO:0010011: auxin binding	5.98E-04
12	GO:0004556: alpha-amylase activity	9.24E-04
13	GO:0003725: double-stranded RNA binding	3.12E-03
14	GO:0003712: transcription cofactor activity	3.66E-03
15	GO:0004190: aspartic-type endopeptidase activity	3.66E-03
16	GO:0005345: purine nucleobase transmembrane transporter activity	4.52E-03
17	GO:0033612: receptor serine/threonine kinase binding	4.82E-03
18	GO:0010333: terpene synthase activity	4.82E-03
19	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.06E-03
20	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.13E-03
21	GO:0003727: single-stranded RNA binding	5.77E-03
22	GO:0005199: structural constituent of cell wall	6.78E-03
23	GO:0000287: magnesium ion binding	8.15E-03
24	GO:0016791: phosphatase activity	8.97E-03
25	GO:0005096: GTPase activator activity	1.27E-02
26	GO:0004722: protein serine/threonine phosphatase activity	1.35E-02
27	GO:0016757: transferase activity, transferring glycosyl groups	1.76E-02
28	GO:0003690: double-stranded DNA binding	2.19E-02
29	GO:0003777: microtubule motor activity	2.30E-02
30	GO:0003779: actin binding	2.69E-02
31	GO:0015035: protein disulfide oxidoreductase activity	2.81E-02
32	GO:0016758: transferase activity, transferring hexosyl groups	3.17E-02
33	GO:0043565: sequence-specific DNA binding	3.22E-02
34	GO:0019843: rRNA binding	3.23E-02
35	GO:0008194: UDP-glycosyltransferase activity	4.40E-02
36	GO:0042802: identical protein binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009569: chloroplast starch grain	1.85E-04
3	GO:0008287: protein serine/threonine phosphatase complex	3.11E-04
4	GO:0009531: secondary cell wall	4.49E-04
5	GO:0005875: microtubule associated complex	3.94E-03
6	GO:0009536: plastid	1.65E-02
7	GO:0000139: Golgi membrane	1.87E-02
8	GO:0031966: mitochondrial membrane	2.04E-02
9	GO:0005634: nucleus	3.65E-02
10	GO:0005615: extracellular space	4.40E-02