co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0046486: glycerolipid metabolic process	0.00E+00
4	GO:0061062: regulation of nematode larval development	2.37E-06
5	GO:0009686: gibberellin biosynthetic process	1.04E-04
6	GO:0051013: microtubule severing	2.25E-04
7	GO:0045786: negative regulation of cell cycle	2.25E-04
8	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.25E-04
9	GO:0010495: long-distance posttranscriptional gene silencing	2.25E-04
10	GO:0032958: inositol phosphate biosynthetic process	2.25E-04
11	GO:0010070: zygote asymmetric cell division	2.25E-04
12	GO:0010583: response to cyclopentenone	2.45E-04
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.43E-04
14	GO:0043039: tRNA aminoacylation	5.00E-04
15	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.00E-04
16	GO:0006650: glycerophospholipid metabolic process	5.00E-04
17	GO:0051301: cell division	6.63E-04
18	GO:0009825: multidimensional cell growth	7.77E-04
19	GO:0016050: vesicle organization	8.13E-04
20	GO:0048575: short-day photoperiodism, flowering	8.13E-04
21	GO:0090506: axillary shoot meristem initiation	8.13E-04
22	GO:0034090: maintenance of meiotic sister chromatid cohesion	8.13E-04
23	GO:0046168: glycerol-3-phosphate catabolic process	8.13E-04
24	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	8.13E-04
25	GO:0006518: peptide metabolic process	8.13E-04
26	GO:0051604: protein maturation	8.13E-04
27	GO:0006863: purine nucleobase transport	8.64E-04
28	GO:0010321: regulation of vegetative phase change	1.16E-03
29	GO:0045017: glycerolipid biosynthetic process	1.16E-03
30	GO:0006020: inositol metabolic process	1.16E-03
31	GO:0007276: gamete generation	1.16E-03
32	GO:0006072: glycerol-3-phosphate metabolic process	1.16E-03
33	GO:0042127: regulation of cell proliferation	1.48E-03
34	GO:0009956: radial pattern formation	1.54E-03
35	GO:0042991: transcription factor import into nucleus	1.54E-03
36	GO:0000271: polysaccharide biosynthetic process	1.73E-03
37	GO:0045489: pectin biosynthetic process	1.87E-03
38	GO:0009740: gibberellic acid mediated signaling pathway	2.01E-03
39	GO:0051726: regulation of cell cycle	2.34E-03
40	GO:0010942: positive regulation of cell death	2.43E-03
41	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.43E-03
42	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.43E-03
43	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.43E-03
44	GO:0016458: gene silencing	2.43E-03
45	GO:0019760: glucosinolate metabolic process	2.78E-03
46	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.91E-03
47	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.91E-03
48	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.43E-03
49	GO:0007050: cell cycle arrest	3.43E-03
50	GO:0000082: G1/S transition of mitotic cell cycle	3.43E-03
51	GO:0010444: guard mother cell differentiation	3.43E-03
52	GO:0006468: protein phosphorylation	3.72E-03
53	GO:0010492: maintenance of shoot apical meristem identity	3.98E-03
54	GO:0009832: plant-type cell wall biogenesis	4.53E-03
55	GO:0007186: G-protein coupled receptor signaling pathway	4.56E-03
56	GO:0006811: ion transport	4.75E-03
57	GO:0009739: response to gibberellin	5.01E-03
58	GO:0048589: developmental growth	5.16E-03
59	GO:0016051: carbohydrate biosynthetic process	5.46E-03
60	GO:0030422: production of siRNA involved in RNA interference	6.45E-03
61	GO:0048829: root cap development	6.45E-03
62	GO:0016441: posttranscriptional gene silencing	6.45E-03
63	GO:0010192: mucilage biosynthetic process	6.45E-03
64	GO:0006782: protoporphyrinogen IX biosynthetic process	6.45E-03
65	GO:0009744: response to sucrose	7.04E-03
66	GO:0016567: protein ubiquitination	7.13E-03
67	GO:0008285: negative regulation of cell proliferation	7.13E-03
68	GO:0009089: lysine biosynthetic process via diaminopimelate	7.13E-03
69	GO:0009750: response to fructose	7.13E-03
70	GO:0005983: starch catabolic process	7.84E-03
71	GO:0010152: pollen maturation	7.84E-03
72	GO:0009416: response to light stimulus	8.96E-03
73	GO:0048366: leaf development	9.32E-03
74	GO:0009887: animal organ morphogenesis	9.33E-03
75	GO:0010540: basipetal auxin transport	9.33E-03
76	GO:0006302: double-strand break repair	9.33E-03
77	GO:0048768: root hair cell tip growth	9.33E-03
78	GO:0009933: meristem structural organization	9.33E-03
79	GO:0010207: photosystem II assembly	9.33E-03
80	GO:0010223: secondary shoot formation	9.33E-03
81	GO:0090351: seedling development	1.01E-02
82	GO:0009833: plant-type primary cell wall biogenesis	1.09E-02
83	GO:0048316: seed development	1.16E-02
84	GO:0006418: tRNA aminoacylation for protein translation	1.26E-02
85	GO:0006874: cellular calcium ion homeostasis	1.26E-02
86	GO:0043622: cortical microtubule organization	1.26E-02
87	GO:0051321: meiotic cell cycle	1.34E-02
88	GO:0003333: amino acid transmembrane transport	1.34E-02
89	GO:0009624: response to nematode	1.36E-02
90	GO:0001944: vasculature development	1.53E-02
91	GO:0048443: stamen development	1.62E-02
92	GO:0010091: trichome branching	1.62E-02
93	GO:0048364: root development	1.72E-02
94	GO:0000226: microtubule cytoskeleton organization	1.81E-02
95	GO:0009741: response to brassinosteroid	1.91E-02
96	GO:0010305: leaf vascular tissue pattern formation	1.91E-02
97	GO:0007018: microtubule-based movement	2.01E-02
98	GO:0048825: cotyledon development	2.11E-02
99	GO:0009749: response to glucose	2.11E-02
100	GO:0008654: phospholipid biosynthetic process	2.11E-02
101	GO:0002229: defense response to oomycetes	2.22E-02
102	GO:0032502: developmental process	2.32E-02
103	GO:0009734: auxin-activated signaling pathway	2.51E-02
104	GO:0009639: response to red or far red light	2.54E-02
105	GO:0071555: cell wall organization	2.58E-02
106	GO:0009908: flower development	2.96E-02
107	GO:0009733: response to auxin	3.06E-02
108	GO:0009627: systemic acquired resistance	3.12E-02
109	GO:0015995: chlorophyll biosynthetic process	3.24E-02
110	GO:0010411: xyloglucan metabolic process	3.24E-02
111	GO:0048573: photoperiodism, flowering	3.24E-02
112	GO:0009817: defense response to fungus, incompatible interaction	3.48E-02
113	GO:0030244: cellulose biosynthetic process	3.48E-02
114	GO:0006865: amino acid transport	3.99E-02
115	GO:0007049: cell cycle	4.05E-02
116	GO:0030001: metal ion transport	4.52E-02
117	GO:0006897: endocytosis	4.66E-02
118	GO:0010114: response to red light	4.93E-02
119	GO:0009926: auxin polar transport	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.25E-04
3	GO:0000829: inositol heptakisphosphate kinase activity	2.25E-04
4	GO:0008836: diaminopimelate decarboxylase activity	2.25E-04
5	GO:0000828: inositol hexakisphosphate kinase activity	2.25E-04
6	GO:0004831: tyrosine-tRNA ligase activity	2.25E-04
7	GO:0008568: microtubule-severing ATPase activity	2.25E-04
8	GO:0004109: coproporphyrinogen oxidase activity	5.00E-04
9	GO:0008805: carbon-monoxide oxygenase activity	5.00E-04
10	GO:0019156: isoamylase activity	5.00E-04
11	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.13E-04
12	GO:0016707: gibberellin 3-beta-dioxygenase activity	8.13E-04
13	GO:0005345: purine nucleobase transmembrane transporter activity	1.05E-03
14	GO:0045544: gibberellin 20-oxidase activity	1.16E-03
15	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.16E-03
16	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.25E-03
17	GO:0010011: auxin binding	1.54E-03
18	GO:0010328: auxin influx transmembrane transporter activity	1.54E-03
19	GO:0004930: G-protein coupled receptor activity	1.54E-03
20	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.87E-03
21	GO:0019901: protein kinase binding	2.15E-03
22	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.43E-03
23	GO:0030332: cyclin binding	2.43E-03
24	GO:0004556: alpha-amylase activity	2.43E-03
25	GO:0004462: lactoylglutathione lyase activity	2.43E-03
26	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.43E-03
27	GO:0043565: sequence-specific DNA binding	8.45E-03
28	GO:0004535: poly(A)-specific ribonuclease activity	9.33E-03
29	GO:0005217: intracellular ligand-gated ion channel activity	1.01E-02
30	GO:0004970: ionotropic glutamate receptor activity	1.01E-02
31	GO:0003777: microtubule motor activity	1.05E-02
32	GO:0008134: transcription factor binding	1.17E-02
33	GO:0008408: 3'-5' exonuclease activity	1.34E-02
34	GO:0004540: ribonuclease activity	1.34E-02
35	GO:0033612: receptor serine/threonine kinase binding	1.34E-02
36	GO:0016760: cellulose synthase (UDP-forming) activity	1.53E-02
37	GO:0016758: transferase activity, transferring hexosyl groups	1.65E-02
38	GO:0004812: aminoacyl-tRNA ligase activity	1.71E-02
39	GO:0001085: RNA polymerase II transcription factor binding	1.91E-02
40	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.94E-02
41	GO:0004674: protein serine/threonine kinase activity	1.98E-02
42	GO:0005515: protein binding	2.20E-02
43	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.22E-02
44	GO:0008017: microtubule binding	2.46E-02
45	GO:0016759: cellulose synthase activity	2.54E-02
46	GO:0016301: kinase activity	2.85E-02
47	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.24E-02
48	GO:0005096: GTPase activator activity	3.61E-02
49	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.73E-02
50	GO:0004222: metalloendopeptidase activity	3.73E-02
51	GO:0030145: manganese ion binding	3.86E-02
52	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.86E-02
53	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.39E-02
54	GO:0004672: protein kinase activity	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	2.25E-04
3	GO:0009569: chloroplast starch grain	5.00E-04
4	GO:0030870: Mre11 complex	5.00E-04
5	GO:0009531: secondary cell wall	1.16E-03
6	GO:0032585: multivesicular body membrane	1.16E-03
7	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.16E-03
8	GO:0000795: synaptonemal complex	1.97E-03
9	GO:0030904: retromer complex	2.43E-03
10	GO:0009570: chloroplast stroma	6.06E-03
11	GO:0009508: plastid chromosome	8.57E-03
12	GO:0005874: microtubule	9.53E-03
13	GO:0005875: microtubule associated complex	1.09E-02
14	GO:0005654: nucleoplasm	1.65E-02
15	GO:0019898: extrinsic component of membrane	2.11E-02
16	GO:0016592: mediator complex	2.32E-02
17	GO:0000785: chromatin	2.32E-02
18	GO:0010319: stromule	2.65E-02
19	GO:0009295: nucleoid	2.65E-02
20	GO:0046658: anchored component of plasma membrane	3.11E-02
21	GO:0005667: transcription factor complex	3.12E-02
22	GO:0009536: plastid	3.48E-02
23	GO:0009707: chloroplast outer membrane	3.48E-02
24	GO:0031977: thylakoid lumen	4.66E-02
25	GO:0016021: integral component of membrane	4.81E-02
26	GO:0090406: pollen tube	4.93E-02