co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031930: mitochondria-nucleus signaling pathway	1.69E-05
2	GO:0032469: endoplasmic reticulum calcium ion homeostasis	6.74E-05
3	GO:1902065: response to L-glutamate	6.74E-05
4	GO:0042539: hypotonic salinity response	6.74E-05
5	GO:0034975: protein folding in endoplasmic reticulum	6.74E-05
6	GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	6.74E-05
7	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	6.74E-05
8	GO:0043066: negative regulation of apoptotic process	1.62E-04
9	GO:0008535: respiratory chain complex IV assembly	1.62E-04
10	GO:0045732: positive regulation of protein catabolic process	1.62E-04
11	GO:0061158: 3'-UTR-mediated mRNA destabilization	2.75E-04
12	GO:0009306: protein secretion	3.02E-04
13	GO:0009152: purine ribonucleotide biosynthetic process	3.98E-04
14	GO:0022622: root system development	5.32E-04
15	GO:0007112: male meiosis cytokinesis	5.32E-04
16	GO:0009247: glycolipid biosynthetic process	6.73E-04
17	GO:0009738: abscisic acid-activated signaling pathway	6.90E-04
18	GO:0001731: formation of translation preinitiation complex	8.23E-04
19	GO:0045962: positive regulation of development, heterochronic	8.23E-04
20	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	9.79E-04
21	GO:0000911: cytokinesis by cell plate formation	9.79E-04
22	GO:0046470: phosphatidylcholine metabolic process	1.14E-03
23	GO:0019375: galactolipid biosynthetic process	1.32E-03
24	GO:1900150: regulation of defense response to fungus	1.32E-03
25	GO:0006972: hyperosmotic response	1.50E-03
26	GO:0009737: response to abscisic acid	1.57E-03
27	GO:0031347: regulation of defense response	1.66E-03
28	GO:0006189: 'de novo' IMP biosynthetic process	1.69E-03
29	GO:0006486: protein glycosylation	1.85E-03
30	GO:0030042: actin filament depolymerization	1.89E-03
31	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.89E-03
32	GO:0008152: metabolic process	2.26E-03
33	GO:0006396: RNA processing	2.69E-03
34	GO:0006626: protein targeting to mitochondrion	2.76E-03
35	GO:0018107: peptidyl-threonine phosphorylation	2.76E-03
36	GO:0007034: vacuolar transport	2.99E-03
37	GO:0006446: regulation of translational initiation	2.99E-03
38	GO:0009266: response to temperature stimulus	2.99E-03
39	GO:0034605: cellular response to heat	2.99E-03
40	GO:0070588: calcium ion transmembrane transport	3.23E-03
41	GO:0007030: Golgi organization	3.23E-03
42	GO:0009863: salicylic acid mediated signaling pathway	3.73E-03
43	GO:0007010: cytoskeleton organization	3.73E-03
44	GO:0045333: cellular respiration	3.73E-03
45	GO:0043622: cortical microtubule organization	3.99E-03
46	GO:0048278: vesicle docking	4.26E-03
47	GO:0061025: membrane fusion	6.28E-03
48	GO:0006464: cellular protein modification process	7.90E-03
49	GO:0006904: vesicle docking involved in exocytosis	8.24E-03
50	GO:0006906: vesicle fusion	9.65E-03
51	GO:0045892: negative regulation of transcription, DNA-templated	1.04E-02
52	GO:0045087: innate immune response	1.27E-02
53	GO:0006897: endocytosis	1.44E-02
54	GO:0009965: leaf morphogenesis	1.65E-02
55	GO:0042538: hyperosmotic salinity response	1.79E-02
56	GO:0006857: oligopeptide transport	1.97E-02
57	GO:0009620: response to fungus	2.26E-02
58	GO:0042545: cell wall modification	2.37E-02
59	GO:0018105: peptidyl-serine phosphorylation	2.47E-02
60	GO:0009058: biosynthetic process	2.94E-02
61	GO:0009845: seed germination	3.00E-02
62	GO:0016036: cellular response to phosphate starvation	3.39E-02
63	GO:0010150: leaf senescence	3.57E-02
64	GO:0045490: pectin catabolic process	3.57E-02
65	GO:0009617: response to bacterium	4.04E-02
66	GO:0010468: regulation of gene expression	4.04E-02
67	GO:0009414: response to water deprivation	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0004644: phosphoribosylglycinamide formyltransferase activity	0.00E+00
2	GO:0046481: digalactosyldiacylglycerol synthase activity	6.74E-05
3	GO:0008378: galactosyltransferase activity	9.94E-05
4	GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity	1.62E-04
5	GO:0004707: MAP kinase activity	2.30E-04
6	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.75E-04
7	GO:0008864: formyltetrahydrofolate deformylase activity	2.75E-04
8	GO:0035250: UDP-galactosyltransferase activity	3.98E-04
9	GO:0046527: glucosyltransferase activity	5.32E-04
10	GO:0009916: alternative oxidase activity	5.32E-04
11	GO:0008194: UDP-glycosyltransferase activity	6.30E-04
12	GO:0004040: amidase activity	6.73E-04
13	GO:0035252: UDP-xylosyltransferase activity	8.23E-04
14	GO:0003730: mRNA 3'-UTR binding	9.79E-04
15	GO:0004525: ribonuclease III activity	1.32E-03
16	GO:0004630: phospholipase D activity	1.50E-03
17	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.50E-03
18	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.39E-03
19	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.39E-03
20	GO:0015198: oligopeptide transporter activity	2.53E-03
21	GO:0005262: calcium channel activity	2.76E-03
22	GO:0005388: calcium-transporting ATPase activity	2.76E-03
23	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.76E-03
24	GO:0016758: transferase activity, transferring hexosyl groups	3.17E-03
25	GO:0051087: chaperone binding	3.99E-03
26	GO:0003756: protein disulfide isomerase activity	5.09E-03
27	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.57E-03
28	GO:0005200: structural constituent of cytoskeleton	8.24E-03
29	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.24E-03
30	GO:0016597: amino acid binding	8.59E-03
31	GO:0004004: ATP-dependent RNA helicase activity	1.00E-02
32	GO:0044212: transcription regulatory region DNA binding	1.01E-02
33	GO:0000149: SNARE binding	1.35E-02
34	GO:0005484: SNAP receptor activity	1.52E-02
35	GO:0045330: aspartyl esterase activity	2.02E-02
36	GO:0005524: ATP binding	2.17E-02
37	GO:0016874: ligase activity	2.31E-02
38	GO:0030599: pectinesterase activity	2.31E-02
39	GO:0022857: transmembrane transporter activity	2.31E-02
40	GO:0003779: actin binding	2.37E-02
41	GO:0043565: sequence-specific DNA binding	2.45E-02
42	GO:0015035: protein disulfide oxidoreductase activity	2.47E-02
43	GO:0004386: helicase activity	2.57E-02
44	GO:0016787: hydrolase activity	2.64E-02
45	GO:0008565: protein transporter activity	3.22E-02
46	GO:0005516: calmodulin binding	3.39E-02
47	GO:0046910: pectinesterase inhibitor activity	3.39E-02
48	GO:0003743: translation initiation factor activity	3.98E-02
49	GO:0005509: calcium ion binding	4.20E-02
50	GO:0016757: transferase activity, transferring glycosyl groups	4.66E-02
51	GO:0000287: magnesium ion binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0016282: eukaryotic 43S preinitiation complex	8.23E-04
2	GO:0033290: eukaryotic 48S preinitiation complex	9.79E-04
3	GO:0005856: cytoskeleton	1.55E-03
4	GO:0043231: intracellular membrane-bounded organelle	2.26E-03
5	GO:0030176: integral component of endoplasmic reticulum membrane	3.23E-03
6	GO:0070469: respiratory chain	3.99E-03
7	GO:0015629: actin cytoskeleton	4.81E-03
8	GO:0009504: cell plate	6.60E-03
9	GO:0071944: cell periphery	7.57E-03
10	GO:0005788: endoplasmic reticulum lumen	9.29E-03
11	GO:0009707: chloroplast outer membrane	1.08E-02
12	GO:0005743: mitochondrial inner membrane	1.18E-02
13	GO:0031201: SNARE complex	1.44E-02
14	GO:0000139: Golgi membrane	1.48E-02
15	GO:0005654: nucleoplasm	2.78E-02
16	GO:0009543: chloroplast thylakoid lumen	2.84E-02
17	GO:0009524: phragmoplast	2.94E-02
18	GO:0005622: intracellular	4.00E-02