co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:0009741: response to brassinosteroid	6.23E-05
5	GO:0015904: tetracycline transport	1.40E-04
6	GO:0000025: maltose catabolic process	1.40E-04
7	GO:0030198: extracellular matrix organization	1.40E-04
8	GO:0046520: sphingoid biosynthetic process	1.40E-04
9	GO:0010480: microsporocyte differentiation	1.40E-04
10	GO:0045892: negative regulation of transcription, DNA-templated	1.66E-04
11	GO:0006741: NADP biosynthetic process	3.20E-04
12	GO:0018026: peptidyl-lysine monomethylation	3.20E-04
13	GO:0071497: cellular response to freezing	3.20E-04
14	GO:0031648: protein destabilization	3.20E-04
15	GO:0010102: lateral root morphogenesis	3.21E-04
16	GO:0009640: photomorphogenesis	4.14E-04
17	GO:0019674: NAD metabolic process	5.26E-04
18	GO:0010321: regulation of vegetative phase change	7.53E-04
19	GO:0019363: pyridine nucleotide biosynthetic process	7.53E-04
20	GO:1902347: response to strigolactone	9.98E-04
21	GO:1901141: regulation of lignin biosynthetic process	9.98E-04
22	GO:0032502: developmental process	1.27E-03
23	GO:0042549: photosystem II stabilization	1.55E-03
24	GO:0010358: leaf shaping	1.55E-03
25	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.55E-03
26	GO:1902456: regulation of stomatal opening	1.55E-03
27	GO:0042793: transcription from plastid promoter	1.55E-03
28	GO:0010405: arabinogalactan protein metabolic process	1.55E-03
29	GO:0010027: thylakoid membrane organization	1.71E-03
30	GO:0048509: regulation of meristem development	1.86E-03
31	GO:0030488: tRNA methylation	1.86E-03
32	GO:0048437: floral organ development	2.18E-03
33	GO:0000160: phosphorelay signal transduction system	2.33E-03
34	GO:0046620: regulation of organ growth	2.52E-03
35	GO:0009690: cytokinin metabolic process	2.52E-03
36	GO:0009704: de-etiolation	2.52E-03
37	GO:0009733: response to auxin	2.92E-03
38	GO:0051865: protein autoubiquitination	3.26E-03
39	GO:0010206: photosystem II repair	3.26E-03
40	GO:0000902: cell morphogenesis	3.26E-03
41	GO:0006631: fatty acid metabolic process	3.33E-03
42	GO:0031425: chloroplast RNA processing	3.65E-03
43	GO:0009641: shade avoidance	4.06E-03
44	GO:0010015: root morphogenesis	4.48E-03
45	GO:0009073: aromatic amino acid family biosynthetic process	4.48E-03
46	GO:0048229: gametophyte development	4.48E-03
47	GO:0009736: cytokinin-activated signaling pathway	4.85E-03
48	GO:0012501: programmed cell death	4.92E-03
49	GO:0005983: starch catabolic process	4.92E-03
50	GO:0010075: regulation of meristem growth	5.37E-03
51	GO:0009767: photosynthetic electron transport chain	5.37E-03
52	GO:0010588: cotyledon vascular tissue pattern formation	5.37E-03
53	GO:0006006: glucose metabolic process	5.37E-03
54	GO:0009934: regulation of meristem structural organization	5.84E-03
55	GO:0090351: seedling development	6.32E-03
56	GO:0009742: brassinosteroid mediated signaling pathway	7.31E-03
57	GO:0048278: vesicle docking	8.38E-03
58	GO:0007165: signal transduction	8.59E-03
59	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.92E-03
60	GO:0031348: negative regulation of defense response	8.92E-03
61	GO:0045492: xylan biosynthetic process	1.01E-02
62	GO:0009734: auxin-activated signaling pathway	1.07E-02
63	GO:0010118: stomatal movement	1.12E-02
64	GO:0048653: anther development	1.12E-02
65	GO:0080022: primary root development	1.12E-02
66	GO:0010087: phloem or xylem histogenesis	1.12E-02
67	GO:0040008: regulation of growth	1.14E-02
68	GO:0010268: brassinosteroid homeostasis	1.18E-02
69	GO:0009960: endosperm development	1.18E-02
70	GO:0010305: leaf vascular tissue pattern formation	1.18E-02
71	GO:0061025: membrane fusion	1.25E-02
72	GO:0009735: response to cytokinin	1.28E-02
73	GO:0009739: response to gibberellin	1.34E-02
74	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.37E-02
75	GO:0071554: cell wall organization or biogenesis	1.37E-02
76	GO:0016132: brassinosteroid biosynthetic process	1.37E-02
77	GO:1901657: glycosyl compound metabolic process	1.51E-02
78	GO:0030163: protein catabolic process	1.51E-02
79	GO:0016125: sterol metabolic process	1.58E-02
80	GO:0010252: auxin homeostasis	1.58E-02
81	GO:0009826: unidimensional cell growth	1.78E-02
82	GO:0006906: vesicle fusion	1.93E-02
83	GO:0009723: response to ethylene	2.14E-02
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.38E-02
85	GO:0009631: cold acclimation	2.39E-02
86	GO:0009867: jasmonic acid mediated signaling pathway	2.55E-02
87	GO:0006887: exocytosis	2.88E-02
88	GO:0032259: methylation	3.25E-02
89	GO:0016042: lipid catabolic process	3.30E-02
90	GO:0006855: drug transmembrane transport	3.41E-02
91	GO:0031347: regulation of defense response	3.50E-02
92	GO:0009753: response to jasmonic acid	3.64E-02
93	GO:0006857: oligopeptide transport	3.97E-02
94	GO:0048367: shoot system development	4.35E-02
95	GO:0009620: response to fungus	4.55E-02
96	GO:0009740: gibberellic acid mediated signaling pathway	4.65E-02
97	GO:0006396: RNA processing	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0010012: steroid 22-alpha hydroxylase activity	1.40E-04
5	GO:0000170: sphingosine hydroxylase activity	1.40E-04
6	GO:0050139: nicotinate-N-glucosyltransferase activity	1.40E-04
7	GO:0004134: 4-alpha-glucanotransferase activity	1.40E-04
8	GO:0009374: biotin binding	1.40E-04
9	GO:0042736: NADH kinase activity	1.40E-04
10	GO:0042284: sphingolipid delta-4 desaturase activity	3.20E-04
11	GO:0008493: tetracycline transporter activity	3.20E-04
12	GO:0070330: aromatase activity	5.26E-04
13	GO:0016298: lipase activity	6.32E-04
14	GO:0046556: alpha-L-arabinofuranosidase activity	9.98E-04
15	GO:0016279: protein-lysine N-methyltransferase activity	9.98E-04
16	GO:0003989: acetyl-CoA carboxylase activity	1.26E-03
17	GO:0018685: alkane 1-monooxygenase activity	1.26E-03
18	GO:0000156: phosphorelay response regulator activity	1.35E-03
19	GO:0005200: structural constituent of cytoskeleton	1.53E-03
20	GO:0080030: methyl indole-3-acetate esterase activity	1.55E-03
21	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.55E-03
22	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.86E-03
23	GO:0016832: aldehyde-lyase activity	1.86E-03
24	GO:0003951: NAD+ kinase activity	2.88E-03
25	GO:0008173: RNA methyltransferase activity	2.88E-03
26	GO:0003712: transcription cofactor activity	6.32E-03
27	GO:0004190: aspartic-type endopeptidase activity	6.32E-03
28	GO:0033612: receptor serine/threonine kinase binding	8.38E-03
29	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.87E-03
30	GO:0005506: iron ion binding	9.14E-03
31	GO:0003727: single-stranded RNA binding	1.01E-02
32	GO:0004518: nuclease activity	1.44E-02
33	GO:0016413: O-acetyltransferase activity	1.71E-02
34	GO:0008168: methyltransferase activity	1.78E-02
35	GO:0016788: hydrolase activity, acting on ester bonds	1.89E-02
36	GO:0102483: scopolin beta-glucosidase activity	2.00E-02
37	GO:0008236: serine-type peptidase activity	2.08E-02
38	GO:0015238: drug transmembrane transporter activity	2.23E-02
39	GO:0008233: peptidase activity	2.26E-02
40	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.39E-02
41	GO:0052689: carboxylic ester hydrolase activity	2.54E-02
42	GO:0008422: beta-glucosidase activity	2.72E-02
43	GO:0000149: SNARE binding	2.72E-02
44	GO:0042393: histone binding	2.80E-02
45	GO:0004871: signal transducer activity	2.88E-02
46	GO:0042803: protein homodimerization activity	2.88E-02
47	GO:0005484: SNAP receptor activity	3.06E-02
48	GO:0043621: protein self-association	3.23E-02
49	GO:0035091: phosphatidylinositol binding	3.23E-02
50	GO:0003824: catalytic activity	3.90E-02
51	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.55E-02
52	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.55E-02
53	GO:0016874: ligase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.20E-04
2	GO:0009317: acetyl-CoA carboxylase complex	5.26E-04
3	GO:0009654: photosystem II oxygen evolving complex	5.53E-04
4	GO:0009544: chloroplast ATP synthase complex	9.98E-04
5	GO:0019898: extrinsic component of membrane	1.12E-03
6	GO:0009501: amyloplast	2.52E-03
7	GO:0009534: chloroplast thylakoid	4.28E-03
8	GO:0005578: proteinaceous extracellular matrix	5.37E-03
9	GO:0009508: plastid chromosome	5.37E-03
10	GO:0015629: actin cytoskeleton	9.48E-03
11	GO:0005770: late endosome	1.18E-02
12	GO:0009295: nucleoid	1.64E-02
13	GO:0031201: SNARE complex	2.88E-02
14	GO:0031902: late endosome membrane	2.88E-02
15	GO:0031977: thylakoid lumen	2.88E-02
16	GO:0090406: pollen tube	3.06E-02
17	GO:0010008: endosome membrane	4.35E-02
18	GO:0005834: heterotrimeric G-protein complex	4.45E-02
19	GO:0012505: endomembrane system	4.75E-02