GO Enrichment Analysis of Co-expressed Genes with
AT3G60190
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006654: phosphatidic acid biosynthetic process | 0.00E+00 |
| 2 | GO:0030968: endoplasmic reticulum unfolded protein response | 1.03E-05 |
| 3 | GO:1990022: RNA polymerase III complex localization to nucleus | 2.88E-05 |
| 4 | GO:0044376: RNA polymerase II complex import to nucleus | 2.88E-05 |
| 5 | GO:0035266: meristem growth | 2.88E-05 |
| 6 | GO:0000077: DNA damage checkpoint | 2.88E-05 |
| 7 | GO:0007292: female gamete generation | 2.88E-05 |
| 8 | GO:0042350: GDP-L-fucose biosynthetic process | 2.88E-05 |
| 9 | GO:0051788: response to misfolded protein | 7.28E-05 |
| 10 | GO:0042853: L-alanine catabolic process | 7.28E-05 |
| 11 | GO:0040020: regulation of meiotic nuclear division | 7.28E-05 |
| 12 | GO:0030433: ubiquitin-dependent ERAD pathway | 7.80E-05 |
| 13 | GO:0009306: protein secretion | 9.47E-05 |
| 14 | GO:0042351: 'de novo' GDP-L-fucose biosynthetic process | 1.27E-04 |
| 15 | GO:0060968: regulation of gene silencing | 1.27E-04 |
| 16 | GO:0009226: nucleotide-sugar biosynthetic process | 1.89E-04 |
| 17 | GO:0071786: endoplasmic reticulum tubular network organization | 1.89E-04 |
| 18 | GO:0072334: UDP-galactose transmembrane transport | 1.89E-04 |
| 19 | GO:0042176: regulation of protein catabolic process | 4.06E-04 |
| 20 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 4.06E-04 |
| 21 | GO:0048827: phyllome development | 4.06E-04 |
| 22 | GO:0048232: male gamete generation | 4.06E-04 |
| 23 | GO:0043248: proteasome assembly | 4.06E-04 |
| 24 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 4.86E-04 |
| 25 | GO:0006744: ubiquinone biosynthetic process | 5.68E-04 |
| 26 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 6.55E-04 |
| 27 | GO:0010078: maintenance of root meristem identity | 6.55E-04 |
| 28 | GO:0010332: response to gamma radiation | 8.35E-04 |
| 29 | GO:0048829: root cap development | 1.03E-03 |
| 30 | GO:0072593: reactive oxygen species metabolic process | 1.13E-03 |
| 31 | GO:0010015: root morphogenesis | 1.13E-03 |
| 32 | GO:0009058: biosynthetic process | 1.18E-03 |
| 33 | GO:0009790: embryo development | 1.30E-03 |
| 34 | GO:0009933: meristem structural organization | 1.45E-03 |
| 35 | GO:0090351: seedling development | 1.56E-03 |
| 36 | GO:0008299: isoprenoid biosynthetic process | 1.92E-03 |
| 37 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.28E-03 |
| 38 | GO:0016032: viral process | 3.43E-03 |
| 39 | GO:0006886: intracellular protein transport | 3.56E-03 |
| 40 | GO:0030163: protein catabolic process | 3.58E-03 |
| 41 | GO:0006904: vesicle docking involved in exocytosis | 3.89E-03 |
| 42 | GO:0001666: response to hypoxia | 4.21E-03 |
| 43 | GO:0009816: defense response to bacterium, incompatible interaction | 4.37E-03 |
| 44 | GO:0010311: lateral root formation | 5.22E-03 |
| 45 | GO:0006499: N-terminal protein myristoylation | 5.40E-03 |
| 46 | GO:0045087: innate immune response | 5.94E-03 |
| 47 | GO:0007165: signal transduction | 6.29E-03 |
| 48 | GO:0006631: fatty acid metabolic process | 6.69E-03 |
| 49 | GO:0051707: response to other organism | 7.08E-03 |
| 50 | GO:0000209: protein polyubiquitination | 7.28E-03 |
| 51 | GO:0009965: leaf morphogenesis | 7.68E-03 |
| 52 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 8.09E-03 |
| 53 | GO:0048367: shoot system development | 1.00E-02 |
| 54 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.02E-02 |
| 55 | GO:0009553: embryo sac development | 1.09E-02 |
| 56 | GO:0018105: peptidyl-serine phosphorylation | 1.14E-02 |
| 57 | GO:0042742: defense response to bacterium | 1.53E-02 |
| 58 | GO:0006413: translational initiation | 1.56E-02 |
| 59 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.78E-02 |
| 60 | GO:0007275: multicellular organism development | 3.01E-02 |
| 61 | GO:0016042: lipid catabolic process | 3.38E-02 |
| 62 | GO:0009408: response to heat | 3.45E-02 |
| 63 | GO:0048364: root development | 3.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034338: short-chain carboxylesterase activity | 0.00E+00 |
| 2 | GO:1990381: ubiquitin-specific protease binding | 2.88E-05 |
| 3 | GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity | 2.88E-05 |
| 4 | GO:0050577: GDP-L-fucose synthase activity | 2.88E-05 |
| 5 | GO:0050347: trans-octaprenyltranstransferase activity | 7.28E-05 |
| 6 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 7.28E-05 |
| 7 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 1.89E-04 |
| 8 | GO:0005460: UDP-glucose transmembrane transporter activity | 1.89E-04 |
| 9 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 2.57E-04 |
| 10 | GO:0004659: prenyltransferase activity | 2.57E-04 |
| 11 | GO:0004623: phospholipase A2 activity | 3.30E-04 |
| 12 | GO:0005459: UDP-galactose transmembrane transporter activity | 3.30E-04 |
| 13 | GO:0036402: proteasome-activating ATPase activity | 4.06E-04 |
| 14 | GO:0004656: procollagen-proline 4-dioxygenase activity | 4.86E-04 |
| 15 | GO:0051082: unfolded protein binding | 9.08E-04 |
| 16 | GO:0030234: enzyme regulator activity | 1.03E-03 |
| 17 | GO:0004161: dimethylallyltranstransferase activity | 1.13E-03 |
| 18 | GO:0008565: protein transporter activity | 1.33E-03 |
| 19 | GO:0005388: calcium-transporting ATPase activity | 1.34E-03 |
| 20 | GO:0017025: TBP-class protein binding | 1.56E-03 |
| 21 | GO:0031418: L-ascorbic acid binding | 1.79E-03 |
| 22 | GO:0050662: coenzyme binding | 2.99E-03 |
| 23 | GO:0016853: isomerase activity | 2.99E-03 |
| 24 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.05E-03 |
| 25 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 5.94E-03 |
| 26 | GO:0016887: ATPase activity | 6.56E-03 |
| 27 | GO:0035091: phosphatidylinositol binding | 7.48E-03 |
| 28 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.48E-03 |
| 29 | GO:0045735: nutrient reservoir activity | 9.79E-03 |
| 30 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.33E-02 |
| 31 | GO:0030170: pyridoxal phosphate binding | 1.41E-02 |
| 32 | GO:0003743: translation initiation factor activity | 1.83E-02 |
| 33 | GO:0003729: mRNA binding | 2.27E-02 |
| 34 | GO:0003924: GTPase activity | 3.45E-02 |
| 35 | GO:0009055: electron carrier activity | 3.62E-02 |
| 36 | GO:0005524: ATP binding | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000836: Hrd1p ubiquitin ligase complex | 2.88E-05 |
| 2 | GO:0044322: endoplasmic reticulum quality control compartment | 2.88E-05 |
| 3 | GO:0000502: proteasome complex | 3.23E-05 |
| 4 | GO:0036513: Derlin-1 retrotranslocation complex | 1.89E-04 |
| 5 | GO:0071782: endoplasmic reticulum tubular network | 1.89E-04 |
| 6 | GO:0031597: cytosolic proteasome complex | 4.86E-04 |
| 7 | GO:0030173: integral component of Golgi membrane | 4.86E-04 |
| 8 | GO:0031595: nuclear proteasome complex | 5.68E-04 |
| 9 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 6.55E-04 |
| 10 | GO:0008540: proteasome regulatory particle, base subcomplex | 9.29E-04 |
| 11 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.13E-03 |
| 12 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.56E-03 |
| 13 | GO:0005795: Golgi stack | 1.56E-03 |
| 14 | GO:0005886: plasma membrane | 1.77E-03 |
| 15 | GO:0005788: endoplasmic reticulum lumen | 4.37E-03 |
| 16 | GO:0005783: endoplasmic reticulum | 7.35E-03 |
| 17 | GO:0005794: Golgi apparatus | 9.10E-03 |
| 18 | GO:0005834: heterotrimeric G-protein complex | 1.02E-02 |
| 19 | GO:0005802: trans-Golgi network | 1.20E-02 |
| 20 | GO:0005622: intracellular | 1.34E-02 |
| 21 | GO:0009705: plant-type vacuole membrane | 1.64E-02 |
| 22 | GO:0005789: endoplasmic reticulum membrane | 2.33E-02 |
| 23 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.39E-02 |
| 24 | GO:0005874: microtubule | 2.55E-02 |
| 25 | GO:0016021: integral component of membrane | 4.76E-02 |