co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:0045038: protein import into chloroplast thylakoid membrane	2.79E-05
8	GO:1902183: regulation of shoot apical meristem development	2.79E-05
9	GO:0010158: abaxial cell fate specification	2.79E-05
10	GO:0010080: regulation of floral meristem growth	1.46E-04
11	GO:0051247: positive regulation of protein metabolic process	1.46E-04
12	GO:2000905: negative regulation of starch metabolic process	1.46E-04
13	GO:0010450: inflorescence meristem growth	1.46E-04
14	GO:2000024: regulation of leaf development	1.56E-04
15	GO:0060359: response to ammonium ion	3.33E-04
16	GO:0048255: mRNA stabilization	3.33E-04
17	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	3.33E-04
18	GO:0006094: gluconeogenesis	3.41E-04
19	GO:0010207: photosystem II assembly	3.85E-04
20	GO:0009944: polarity specification of adaxial/abaxial axis	5.33E-04
21	GO:0010022: meristem determinacy	5.47E-04
22	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.47E-04
23	GO:0048586: regulation of long-day photoperiodism, flowering	5.47E-04
24	GO:0010623: programmed cell death involved in cell development	5.47E-04
25	GO:0043157: response to cation stress	5.47E-04
26	GO:0045165: cell fate commitment	5.47E-04
27	GO:0010431: seed maturation	6.43E-04
28	GO:0016556: mRNA modification	7.83E-04
29	GO:0009226: nucleotide-sugar biosynthetic process	7.83E-04
30	GO:2001141: regulation of RNA biosynthetic process	7.83E-04
31	GO:0051513: regulation of monopolar cell growth	7.83E-04
32	GO:0006096: glycolytic process	8.03E-04
33	GO:0010154: fruit development	1.03E-03
34	GO:2000306: positive regulation of photomorphogenesis	1.04E-03
35	GO:0010508: positive regulation of autophagy	1.04E-03
36	GO:0010236: plastoquinone biosynthetic process	1.31E-03
37	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.61E-03
38	GO:0009959: negative gravitropism	1.61E-03
39	GO:0010027: thylakoid membrane organization	1.81E-03
40	GO:0042372: phylloquinone biosynthetic process	1.93E-03
41	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.27E-03
42	GO:0006955: immune response	2.27E-03
43	GO:0042255: ribosome assembly	2.63E-03
44	GO:0006353: DNA-templated transcription, termination	2.63E-03
45	GO:0006605: protein targeting	2.63E-03
46	GO:0048564: photosystem I assembly	2.63E-03
47	GO:0009657: plastid organization	3.00E-03
48	GO:0010093: specification of floral organ identity	3.00E-03
49	GO:0071482: cellular response to light stimulus	3.00E-03
50	GO:0006098: pentose-phosphate shunt	3.40E-03
51	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.40E-03
52	GO:0010206: photosystem II repair	3.40E-03
53	GO:0000373: Group II intron splicing	3.40E-03
54	GO:1900865: chloroplast RNA modification	3.81E-03
55	GO:0031425: chloroplast RNA processing	3.81E-03
56	GO:0042546: cell wall biogenesis	3.98E-03
57	GO:0006415: translational termination	4.67E-03
58	GO:0006352: DNA-templated transcription, initiation	4.67E-03
59	GO:0045037: protein import into chloroplast stroma	5.13E-03
60	GO:0010582: floral meristem determinacy	5.13E-03
61	GO:0009933: meristem structural organization	6.09E-03
62	GO:0006629: lipid metabolic process	7.48E-03
63	GO:0016998: cell wall macromolecule catabolic process	8.73E-03
64	GO:0071555: cell wall organization	1.03E-02
65	GO:0019722: calcium-mediated signaling	1.05E-02
66	GO:0009306: protein secretion	1.05E-02
67	GO:0010089: xylem development	1.05E-02
68	GO:0016117: carotenoid biosynthetic process	1.11E-02
69	GO:0008033: tRNA processing	1.17E-02
70	GO:0034220: ion transmembrane transport	1.17E-02
71	GO:0010501: RNA secondary structure unwinding	1.17E-02
72	GO:0045489: pectin biosynthetic process	1.24E-02
73	GO:0048868: pollen tube development	1.24E-02
74	GO:0048544: recognition of pollen	1.30E-02
75	GO:0009451: RNA modification	1.30E-02
76	GO:0007059: chromosome segregation	1.30E-02
77	GO:0000302: response to reactive oxygen species	1.43E-02
78	GO:0010583: response to cyclopentenone	1.50E-02
79	GO:0016032: viral process	1.50E-02
80	GO:0032502: developmental process	1.50E-02
81	GO:0009630: gravitropism	1.50E-02
82	GO:0006914: autophagy	1.64E-02
83	GO:0007267: cell-cell signaling	1.72E-02
84	GO:0009911: positive regulation of flower development	1.86E-02
85	GO:0001666: response to hypoxia	1.86E-02
86	GO:0005975: carbohydrate metabolic process	1.92E-02
87	GO:0010029: regulation of seed germination	1.94E-02
88	GO:0009658: chloroplast organization	1.97E-02
89	GO:0010411: xyloglucan metabolic process	2.09E-02
90	GO:0016311: dephosphorylation	2.17E-02
91	GO:0009817: defense response to fungus, incompatible interaction	2.25E-02
92	GO:0018298: protein-chromophore linkage	2.25E-02
93	GO:0006499: N-terminal protein myristoylation	2.41E-02
94	GO:0009407: toxin catabolic process	2.41E-02
95	GO:0007568: aging	2.49E-02
96	GO:0034599: cellular response to oxidative stress	2.75E-02
97	GO:0015979: photosynthesis	2.79E-02
98	GO:0006839: mitochondrial transport	2.92E-02
99	GO:0009644: response to high light intensity	3.37E-02
100	GO:0009636: response to toxic substance	3.47E-02
101	GO:0009965: leaf morphogenesis	3.47E-02
102	GO:0006855: drug transmembrane transport	3.56E-02
103	GO:0009793: embryo development ending in seed dormancy	3.57E-02
104	GO:0006397: mRNA processing	3.75E-02
105	GO:0006364: rRNA processing	3.94E-02
106	GO:0051603: proteolysis involved in cellular protein catabolic process	4.04E-02
107	GO:0009909: regulation of flower development	4.24E-02
108	GO:0009620: response to fungus	4.75E-02
109	GO:0009740: gibberellic acid mediated signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
2	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
7	GO:0042834: peptidoglycan binding	1.46E-04
8	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	1.46E-04
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	1.46E-04
10	GO:0048531: beta-1,3-galactosyltransferase activity	3.33E-04
11	GO:0004802: transketolase activity	3.33E-04
12	GO:0008081: phosphoric diester hydrolase activity	3.41E-04
13	GO:0003913: DNA photolyase activity	5.47E-04
14	GO:0004557: alpha-galactosidase activity	5.47E-04
15	GO:0052692: raffinose alpha-galactosidase activity	5.47E-04
16	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	5.47E-04
17	GO:0016149: translation release factor activity, codon specific	7.83E-04
18	GO:0016987: sigma factor activity	1.04E-03
19	GO:0001053: plastid sigma factor activity	1.04E-03
20	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.04E-03
21	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.31E-03
22	GO:0004130: cytochrome-c peroxidase activity	1.61E-03
23	GO:0004462: lactoylglutathione lyase activity	1.61E-03
24	GO:0016688: L-ascorbate peroxidase activity	1.61E-03
25	GO:0004332: fructose-bisphosphate aldolase activity	1.61E-03
26	GO:0003723: RNA binding	1.91E-03
27	GO:0004017: adenylate kinase activity	1.93E-03
28	GO:0009881: photoreceptor activity	2.27E-03
29	GO:0008312: 7S RNA binding	2.63E-03
30	GO:0043022: ribosome binding	2.63E-03
31	GO:0003747: translation release factor activity	3.40E-03
32	GO:0030955: potassium ion binding	3.81E-03
33	GO:0004743: pyruvate kinase activity	3.81E-03
34	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.67E-03
35	GO:0004161: dimethylallyltranstransferase activity	4.67E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.09E-03
37	GO:0005528: FK506 binding	7.63E-03
38	GO:0004519: endonuclease activity	8.33E-03
39	GO:0003727: single-stranded RNA binding	1.05E-02
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.18E-02
41	GO:0019901: protein kinase binding	1.37E-02
42	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.43E-02
43	GO:0004518: nuclease activity	1.50E-02
44	GO:0015250: water channel activity	1.86E-02
45	GO:0004721: phosphoprotein phosphatase activity	2.09E-02
46	GO:0004004: ATP-dependent RNA helicase activity	2.09E-02
47	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.09E-02
48	GO:0008236: serine-type peptidase activity	2.17E-02
49	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.20E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.25E-02
51	GO:0015238: drug transmembrane transporter activity	2.33E-02
52	GO:0004222: metalloendopeptidase activity	2.41E-02
53	GO:0004871: signal transducer activity	3.06E-02
54	GO:0004364: glutathione transferase activity	3.10E-02
55	GO:0004185: serine-type carboxypeptidase activity	3.19E-02
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.56E-02
57	GO:0003924: GTPase activity	3.60E-02
58	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.94E-02
59	GO:0003690: double-stranded DNA binding	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.25E-12
2	GO:0080085: signal recognition particle, chloroplast targeting	1.05E-06
3	GO:0009570: chloroplast stroma	1.19E-04
4	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.27E-04
5	GO:0046658: anchored component of plasma membrane	4.67E-04
6	GO:0009543: chloroplast thylakoid lumen	1.33E-03
7	GO:0042807: central vacuole	2.27E-03
8	GO:0000326: protein storage vacuole	3.00E-03
9	GO:0009535: chloroplast thylakoid membrane	3.25E-03
10	GO:0031977: thylakoid lumen	3.53E-03
11	GO:0031969: chloroplast membrane	4.56E-03
12	GO:0009579: thylakoid	4.62E-03
13	GO:0009941: chloroplast envelope	4.77E-03
14	GO:0000311: plastid large ribosomal subunit	5.13E-03
15	GO:0005578: proteinaceous extracellular matrix	5.60E-03
16	GO:0031225: anchored component of membrane	6.91E-03
17	GO:0009654: photosystem II oxygen evolving complex	8.18E-03
18	GO:0042651: thylakoid membrane	8.18E-03
19	GO:0005623: cell	9.42E-03
20	GO:0009705: plant-type vacuole membrane	1.27E-02
21	GO:0019898: extrinsic component of membrane	1.37E-02
22	GO:0009505: plant-type cell wall	1.44E-02
23	GO:0030529: intracellular ribonucleoprotein complex	1.86E-02
24	GO:0019005: SCF ubiquitin ligase complex	2.25E-02
25	GO:0015934: large ribosomal subunit	2.49E-02