Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
2GO:1900367: positive regulation of defense response to insect0.00E+00
3GO:0002764: immune response-regulating signaling pathway0.00E+00
4GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
5GO:0033587: shikimate biosynthetic process0.00E+00
6GO:0045730: respiratory burst0.00E+00
7GO:0035264: multicellular organism growth0.00E+00
8GO:0032499: detection of peptidoglycan0.00E+00
9GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
10GO:0071327: cellular response to trehalose stimulus0.00E+00
11GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
12GO:0010200: response to chitin4.68E-09
13GO:0006468: protein phosphorylation9.35E-09
14GO:0060548: negative regulation of cell death7.20E-07
15GO:0009697: salicylic acid biosynthetic process1.62E-06
16GO:0031348: negative regulation of defense response1.38E-05
17GO:0042742: defense response to bacterium1.48E-05
18GO:0046777: protein autophosphorylation7.02E-05
19GO:0080142: regulation of salicylic acid biosynthetic process8.19E-05
20GO:0045088: regulation of innate immune response8.19E-05
21GO:0009816: defense response to bacterium, incompatible interaction1.09E-04
22GO:0009617: response to bacterium1.14E-04
23GO:0070588: calcium ion transmembrane transport1.22E-04
24GO:0010225: response to UV-C1.28E-04
25GO:0006979: response to oxidative stress3.03E-04
26GO:0046470: phosphatidylcholine metabolic process3.23E-04
27GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.65E-04
28GO:0010941: regulation of cell death3.65E-04
29GO:0010421: hydrogen peroxide-mediated programmed cell death3.65E-04
30GO:0007229: integrin-mediated signaling pathway3.65E-04
31GO:1901183: positive regulation of camalexin biosynthetic process3.65E-04
32GO:0009270: response to humidity3.65E-04
33GO:0006643: membrane lipid metabolic process3.65E-04
34GO:0080157: regulation of plant-type cell wall organization or biogenesis3.65E-04
35GO:0032491: detection of molecule of fungal origin3.65E-04
36GO:0031338: regulation of vesicle fusion3.65E-04
37GO:0042759: long-chain fatty acid biosynthetic process3.65E-04
38GO:0051938: L-glutamate import3.65E-04
39GO:0019567: arabinose biosynthetic process3.65E-04
40GO:0030091: protein repair4.05E-04
41GO:0010150: leaf senescence4.64E-04
42GO:2000031: regulation of salicylic acid mediated signaling pathway4.96E-04
43GO:0090333: regulation of stomatal closure5.94E-04
44GO:0010115: regulation of abscisic acid biosynthetic process7.94E-04
45GO:0010271: regulation of chlorophyll catabolic process7.94E-04
46GO:0019725: cellular homeostasis7.94E-04
47GO:0043091: L-arginine import7.94E-04
48GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.94E-04
49GO:0015802: basic amino acid transport7.94E-04
50GO:0010618: aerenchyma formation7.94E-04
51GO:0006952: defense response8.15E-04
52GO:0009626: plant-type hypersensitive response8.25E-04
53GO:0055046: microgametogenesis1.22E-03
54GO:0010498: proteasomal protein catabolic process1.29E-03
55GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.29E-03
56GO:0016045: detection of bacterium1.29E-03
57GO:0034051: negative regulation of plant-type hypersensitive response1.29E-03
58GO:1900140: regulation of seedling development1.29E-03
59GO:0010359: regulation of anion channel activity1.29E-03
60GO:0045793: positive regulation of cell size1.29E-03
61GO:0090630: activation of GTPase activity1.29E-03
62GO:0010186: positive regulation of cellular defense response1.29E-03
63GO:0048281: inflorescence morphogenesis1.29E-03
64GO:0009266: response to temperature stimulus1.37E-03
65GO:0010119: regulation of stomatal movement1.50E-03
66GO:0072334: UDP-galactose transmembrane transport1.85E-03
67GO:0010306: rhamnogalacturonan II biosynthetic process1.85E-03
68GO:0002679: respiratory burst involved in defense response1.85E-03
69GO:0071323: cellular response to chitin1.85E-03
70GO:0046513: ceramide biosynthetic process1.85E-03
71GO:0046836: glycolipid transport1.85E-03
72GO:0048194: Golgi vesicle budding1.85E-03
73GO:0007165: signal transduction2.06E-03
74GO:0009738: abscisic acid-activated signaling pathway2.16E-03
75GO:0009737: response to abscisic acid2.18E-03
76GO:0033358: UDP-L-arabinose biosynthetic process2.49E-03
77GO:0010107: potassium ion import2.49E-03
78GO:0071219: cellular response to molecule of bacterial origin2.49E-03
79GO:0010508: positive regulation of autophagy2.49E-03
80GO:0009694: jasmonic acid metabolic process2.49E-03
81GO:0045227: capsule polysaccharide biosynthetic process2.49E-03
82GO:0046345: abscisic acid catabolic process2.49E-03
83GO:0010483: pollen tube reception2.49E-03
84GO:0009652: thigmotropism2.49E-03
85GO:0009625: response to insect2.74E-03
86GO:0006470: protein dephosphorylation2.79E-03
87GO:0009751: response to salicylic acid2.84E-03
88GO:0009164: nucleoside catabolic process3.18E-03
89GO:0010117: photoprotection3.18E-03
90GO:0032957: inositol trisphosphate metabolic process3.18E-03
91GO:0009809: lignin biosynthetic process3.42E-03
92GO:0006486: protein glycosylation3.42E-03
93GO:0042391: regulation of membrane potential3.49E-03
94GO:0010118: stomatal movement3.49E-03
95GO:1900425: negative regulation of defense response to bacterium3.93E-03
96GO:0018258: protein O-linked glycosylation via hydroxyproline3.93E-03
97GO:0046855: inositol phosphate dephosphorylation3.93E-03
98GO:0002238: response to molecule of fungal origin3.93E-03
99GO:0010942: positive regulation of cell death3.93E-03
100GO:0010405: arabinogalactan protein metabolic process3.93E-03
101GO:0009646: response to absence of light4.05E-03
102GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.74E-03
103GO:0042372: phylloquinone biosynthetic process4.74E-03
104GO:0009612: response to mechanical stimulus4.74E-03
105GO:0010555: response to mannitol4.74E-03
106GO:0010310: regulation of hydrogen peroxide metabolic process4.74E-03
107GO:2000067: regulation of root morphogenesis4.74E-03
108GO:0009620: response to fungus4.77E-03
109GO:0010044: response to aluminum ion5.60E-03
110GO:0010161: red light signaling pathway5.60E-03
111GO:0098869: cellular oxidant detoxification5.60E-03
112GO:0071446: cellular response to salicylic acid stimulus5.60E-03
113GO:1900056: negative regulation of leaf senescence5.60E-03
114GO:0009742: brassinosteroid mediated signaling pathway5.77E-03
115GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.47E-03
116GO:0009787: regulation of abscisic acid-activated signaling pathway6.51E-03
117GO:0006644: phospholipid metabolic process6.51E-03
118GO:0001666: response to hypoxia6.72E-03
119GO:0007186: G-protein coupled receptor signaling pathway7.47E-03
120GO:0010204: defense response signaling pathway, resistance gene-independent7.47E-03
121GO:0030968: endoplasmic reticulum unfolded protein response7.47E-03
122GO:0009808: lignin metabolic process7.47E-03
123GO:0010099: regulation of photomorphogenesis7.47E-03
124GO:0009627: systemic acquired resistance7.51E-03
125GO:0009611: response to wounding8.27E-03
126GO:0006098: pentose-phosphate shunt8.47E-03
127GO:0051865: protein autoubiquitination8.47E-03
128GO:0046916: cellular transition metal ion homeostasis8.47E-03
129GO:0010112: regulation of systemic acquired resistance8.47E-03
130GO:0009051: pentose-phosphate shunt, oxidative branch8.47E-03
131GO:0035556: intracellular signal transduction8.74E-03
132GO:0009832: plant-type cell wall biogenesis9.24E-03
133GO:0048354: mucilage biosynthetic process involved in seed coat development9.53E-03
134GO:0010380: regulation of chlorophyll biosynthetic process9.53E-03
135GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.53E-03
136GO:0008202: steroid metabolic process9.53E-03
137GO:1900426: positive regulation of defense response to bacterium9.53E-03
138GO:0032259: methylation1.04E-02
139GO:0007064: mitotic sister chromatid cohesion1.06E-02
140GO:0016042: lipid catabolic process1.06E-02
141GO:0045087: innate immune response1.12E-02
142GO:0009750: response to fructose1.18E-02
143GO:0046856: phosphatidylinositol dephosphorylation1.18E-02
144GO:0002213: defense response to insect1.30E-02
145GO:0010105: negative regulation of ethylene-activated signaling pathway1.30E-02
146GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.30E-02
147GO:0008361: regulation of cell size1.30E-02
148GO:0012501: programmed cell death1.30E-02
149GO:0016567: protein ubiquitination1.35E-02
150GO:0006006: glucose metabolic process1.42E-02
151GO:0009744: response to sucrose1.44E-02
152GO:0051707: response to other organism1.44E-02
153GO:0002237: response to molecule of bacterial origin1.55E-02
154GO:0010540: basipetal auxin transport1.55E-02
155GO:0009409: response to cold1.66E-02
156GO:0090351: seedling development1.68E-02
157GO:0046854: phosphatidylinositol phosphorylation1.68E-02
158GO:0009969: xyloglucan biosynthetic process1.68E-02
159GO:0009225: nucleotide-sugar metabolic process1.68E-02
160GO:0006855: drug transmembrane transport1.69E-02
161GO:0009695: jasmonic acid biosynthetic process2.09E-02
162GO:0003333: amino acid transmembrane transport2.24E-02
163GO:0048511: rhythmic process2.24E-02
164GO:0016226: iron-sulfur cluster assembly2.38E-02
165GO:2000022: regulation of jasmonic acid mediated signaling pathway2.38E-02
166GO:0071456: cellular response to hypoxia2.38E-02
167GO:0006012: galactose metabolic process2.54E-02
168GO:0009414: response to water deprivation2.56E-02
169GO:0019722: calcium-mediated signaling2.69E-02
170GO:0009561: megagametogenesis2.69E-02
171GO:0010584: pollen exine formation2.69E-02
172GO:0042147: retrograde transport, endosome to Golgi2.85E-02
173GO:0042631: cellular response to water deprivation3.01E-02
174GO:0010197: polar nucleus fusion3.18E-02
175GO:0048544: recognition of pollen3.35E-02
176GO:0009749: response to glucose3.52E-02
177GO:0008654: phospholipid biosynthetic process3.52E-02
178GO:0002229: defense response to oomycetes3.69E-02
179GO:0000302: response to reactive oxygen species3.69E-02
180GO:0010193: response to ozone3.69E-02
181GO:0006891: intra-Golgi vesicle-mediated transport3.69E-02
182GO:0009845: seed germination3.76E-02
183GO:0016032: viral process3.87E-02
184GO:0009630: gravitropism3.87E-02
185GO:0006629: lipid metabolic process3.99E-02
186GO:0030163: protein catabolic process4.05E-02
187GO:0009753: response to jasmonic acid4.35E-02
188GO:0006904: vesicle docking involved in exocytosis4.42E-02
189GO:0009911: positive regulation of flower development4.80E-02
190GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.99E-02
RankGO TermAdjusted P value
1GO:0080131: hydroxyjasmonate sulfotransferase activity0.00E+00
2GO:0070191: methionine-R-sulfoxide reductase activity0.00E+00
3GO:2001080: chitosan binding0.00E+00
4GO:0004168: dolichol kinase activity0.00E+00
5GO:0004674: protein serine/threonine kinase activity5.69E-09
6GO:0016301: kinase activity2.71E-08
7GO:0005524: ATP binding2.39E-06
8GO:0019199: transmembrane receptor protein kinase activity8.19E-05
9GO:0005388: calcium-transporting ATPase activity8.48E-05
10GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.28E-04
11GO:0005509: calcium ion binding2.35E-04
12GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.49E-04
13GO:0004012: phospholipid-translocating ATPase activity2.49E-04
14GO:0004672: protein kinase activity2.67E-04
15GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity3.65E-04
16GO:0008909: isochorismate synthase activity3.65E-04
17GO:0031127: alpha-(1,2)-fucosyltransferase activity3.65E-04
18GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.65E-04
19GO:0015085: calcium ion transmembrane transporter activity3.65E-04
20GO:0005516: calmodulin binding4.76E-04
21GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.96E-04
22GO:0004630: phospholipase D activity4.96E-04
23GO:0019901: protein kinase binding5.18E-04
24GO:0001671: ATPase activator activity7.94E-04
25GO:0050291: sphingosine N-acyltransferase activity7.94E-04
26GO:0022821: potassium ion antiporter activity7.94E-04
27GO:0008171: O-methyltransferase activity8.18E-04
28GO:0043531: ADP binding1.18E-03
29GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.22E-03
30GO:0042409: caffeoyl-CoA O-methyltransferase activity1.29E-03
31GO:0031683: G-protein beta/gamma-subunit complex binding1.29E-03
32GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity1.29E-03
33GO:0046423: allene-oxide cyclase activity1.29E-03
34GO:0016595: glutamate binding1.29E-03
35GO:0001664: G-protein coupled receptor binding1.29E-03
36GO:0004190: aspartic-type endopeptidase activity1.53E-03
37GO:0030552: cAMP binding1.53E-03
38GO:0030553: cGMP binding1.53E-03
39GO:0004445: inositol-polyphosphate 5-phosphatase activity1.85E-03
40GO:0015181: arginine transmembrane transporter activity1.85E-03
41GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity1.85E-03
42GO:0015189: L-lysine transmembrane transporter activity1.85E-03
43GO:0017089: glycolipid transporter activity1.85E-03
44GO:0005216: ion channel activity2.09E-03
45GO:0043424: protein histidine kinase binding2.09E-03
46GO:0004842: ubiquitin-protein transferase activity2.12E-03
47GO:0033612: receptor serine/threonine kinase binding2.30E-03
48GO:0005313: L-glutamate transmembrane transporter activity2.49E-03
49GO:0050373: UDP-arabinose 4-epimerase activity2.49E-03
50GO:0004345: glucose-6-phosphate dehydrogenase activity2.49E-03
51GO:0051861: glycolipid binding2.49E-03
52GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.18E-03
53GO:0017137: Rab GTPase binding3.18E-03
54GO:0047631: ADP-ribose diphosphatase activity3.18E-03
55GO:0010294: abscisic acid glucosyltransferase activity3.18E-03
56GO:0005459: UDP-galactose transmembrane transporter activity3.18E-03
57GO:0030551: cyclic nucleotide binding3.49E-03
58GO:0005249: voltage-gated potassium channel activity3.49E-03
59GO:0016298: lipase activity3.57E-03
60GO:0000210: NAD+ diphosphatase activity3.93E-03
61GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.93E-03
62GO:0035252: UDP-xylosyltransferase activity3.93E-03
63GO:0004605: phosphatidate cytidylyltransferase activity3.93E-03
64GO:1990714: hydroxyproline O-galactosyltransferase activity3.93E-03
65GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides4.74E-03
66GO:0003978: UDP-glucose 4-epimerase activity4.74E-03
67GO:0019900: kinase binding4.74E-03
68GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.74E-03
69GO:0008195: phosphatidate phosphatase activity4.74E-03
70GO:0046872: metal ion binding5.02E-03
71GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity5.60E-03
72GO:0005544: calcium-dependent phospholipid binding6.51E-03
73GO:0004714: transmembrane receptor protein tyrosine kinase activity6.51E-03
74GO:0004430: 1-phosphatidylinositol 4-kinase activity7.47E-03
75GO:0008142: oxysterol binding7.47E-03
76GO:0004806: triglyceride lipase activity7.93E-03
77GO:0004721: phosphoprotein phosphatase activity7.93E-03
78GO:0008417: fucosyltransferase activity8.47E-03
79GO:0015238: drug transmembrane transporter activity9.24E-03
80GO:0004722: protein serine/threonine phosphatase activity9.30E-03
81GO:0015174: basic amino acid transmembrane transporter activity9.53E-03
82GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.85E-03
83GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.02E-02
84GO:0004713: protein tyrosine kinase activity1.06E-02
85GO:0004568: chitinase activity1.06E-02
86GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.30E-02
87GO:0008378: galactosyltransferase activity1.30E-02
88GO:0004521: endoribonuclease activity1.30E-02
89GO:0030246: carbohydrate binding1.33E-02
90GO:0015095: magnesium ion transmembrane transporter activity1.42E-02
91GO:0005515: protein binding1.50E-02
92GO:0008061: chitin binding1.68E-02
93GO:0008146: sulfotransferase activity1.68E-02
94GO:0003954: NADH dehydrogenase activity1.95E-02
95GO:0051087: chaperone binding2.09E-02
96GO:0008234: cysteine-type peptidase activity2.16E-02
97GO:0004707: MAP kinase activity2.24E-02
98GO:0004871: signal transducer activity3.26E-02
99GO:0010181: FMN binding3.35E-02
100GO:0004197: cysteine-type endopeptidase activity3.87E-02
101GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.42E-02
102GO:0015297: antiporter activity4.56E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.24E-15
2GO:0016021: integral component of membrane3.09E-04
3GO:0031304: intrinsic component of mitochondrial inner membrane7.94E-04
4GO:0005901: caveola7.94E-04
5GO:0008287: protein serine/threonine phosphatase complex1.29E-03
6GO:0042406: extrinsic component of endoplasmic reticulum membrane1.29E-03
7GO:0005887: integral component of plasma membrane1.35E-03
8GO:0030176: integral component of endoplasmic reticulum membrane1.53E-03
9GO:0070062: extracellular exosome1.85E-03
10GO:0005834: heterotrimeric G-protein complex4.59E-03
11GO:0030173: integral component of Golgi membrane4.74E-03
12GO:0032580: Golgi cisterna membrane5.63E-03
13GO:0031012: extracellular matrix1.42E-02
14GO:0005737: cytoplasm1.72E-02
15GO:0005769: early endosome1.81E-02
16GO:0005758: mitochondrial intermembrane space1.95E-02
17GO:0012505: endomembrane system2.70E-02
18GO:0000145: exocyst3.87E-02
19GO:0043231: intracellular membrane-bounded organelle4.50E-02
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Gene type



Gene DE type