co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071985: multivesicular body sorting pathway	0.00E+00
2	GO:0080149: sucrose induced translational repression	0.00E+00
3	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
4	GO:1900384: regulation of flavonol biosynthetic process	7.90E-05
5	GO:0042350: GDP-L-fucose biosynthetic process	7.90E-05
6	GO:0010421: hydrogen peroxide-mediated programmed cell death	7.90E-05
7	GO:0015709: thiosulfate transport	1.89E-04
8	GO:0071422: succinate transmembrane transport	1.89E-04
9	GO:0009805: coumarin biosynthetic process	1.89E-04
10	GO:0042853: L-alanine catabolic process	1.89E-04
11	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	1.89E-04
12	GO:0006886: intracellular protein transport	3.16E-04
13	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	3.17E-04
14	GO:0010253: UDP-rhamnose biosynthetic process	3.17E-04
15	GO:0009226: nucleotide-sugar biosynthetic process	4.58E-04
16	GO:0051639: actin filament network formation	4.58E-04
17	GO:0015729: oxaloacetate transport	4.58E-04
18	GO:0051764: actin crosslink formation	6.09E-04
19	GO:1902584: positive regulation of response to water deprivation	6.09E-04
20	GO:0033356: UDP-L-arabinose metabolic process	6.09E-04
21	GO:0097428: protein maturation by iron-sulfur cluster transfer	7.72E-04
22	GO:0045927: positive regulation of growth	7.72E-04
23	GO:0071423: malate transmembrane transport	7.72E-04
24	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	9.42E-04
25	GO:0010315: auxin efflux	9.42E-04
26	GO:0035435: phosphate ion transmembrane transport	9.42E-04
27	GO:0009738: abscisic acid-activated signaling pathway	9.49E-04
28	GO:0017148: negative regulation of translation	1.12E-03
29	GO:0034389: lipid particle organization	1.12E-03
30	GO:0080186: developmental vegetative growth	1.31E-03
31	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.31E-03
32	GO:0071669: plant-type cell wall organization or biogenesis	1.31E-03
33	GO:0008272: sulfate transport	1.31E-03
34	GO:0009651: response to salt stress	1.36E-03
35	GO:0006605: protein targeting	1.51E-03
36	GO:0045010: actin nucleation	1.51E-03
37	GO:0016559: peroxisome fission	1.51E-03
38	GO:0016192: vesicle-mediated transport	1.70E-03
39	GO:0009699: phenylpropanoid biosynthetic process	1.72E-03
40	GO:0006002: fructose 6-phosphate metabolic process	1.72E-03
41	GO:0015996: chlorophyll catabolic process	1.72E-03
42	GO:0000902: cell morphogenesis	1.95E-03
43	GO:0009835: fruit ripening	1.95E-03
44	GO:0007275: multicellular organism development	1.99E-03
45	GO:0000103: sulfate assimilation	2.41E-03
46	GO:0009688: abscisic acid biosynthetic process	2.41E-03
47	GO:0016441: posttranscriptional gene silencing	2.41E-03
48	GO:0051555: flavonol biosynthetic process	2.41E-03
49	GO:0046856: phosphatidylinositol dephosphorylation	2.66E-03
50	GO:0000266: mitochondrial fission	2.92E-03
51	GO:0045037: protein import into chloroplast stroma	2.92E-03
52	GO:0030036: actin cytoskeleton organization	3.18E-03
53	GO:0007015: actin filament organization	3.45E-03
54	GO:0034605: cellular response to heat	3.45E-03
55	GO:0090351: seedling development	3.73E-03
56	GO:0007033: vacuole organization	3.73E-03
57	GO:0010053: root epidermal cell differentiation	3.73E-03
58	GO:0009225: nucleotide-sugar metabolic process	3.73E-03
59	GO:0009825: multidimensional cell growth	3.73E-03
60	GO:0051017: actin filament bundle assembly	4.31E-03
61	GO:0030150: protein import into mitochondrial matrix	4.31E-03
62	GO:0019915: lipid storage	4.92E-03
63	GO:0007005: mitochondrion organization	5.24E-03
64	GO:0019748: secondary metabolic process	5.24E-03
65	GO:0009411: response to UV	5.56E-03
66	GO:0042127: regulation of cell proliferation	5.89E-03
67	GO:0010118: stomatal movement	6.57E-03
68	GO:0006662: glycerol ether metabolic process	6.92E-03
69	GO:0010182: sugar mediated signaling pathway	6.92E-03
70	GO:0006623: protein targeting to vacuole	7.64E-03
71	GO:0016032: viral process	8.39E-03
72	GO:0001666: response to hypoxia	1.04E-02
73	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.08E-02
74	GO:0006888: ER to Golgi vesicle-mediated transport	1.16E-02
75	GO:0030244: cellulose biosynthetic process	1.25E-02
76	GO:0009832: plant-type cell wall biogenesis	1.29E-02
77	GO:0048767: root hair elongation	1.29E-02
78	GO:0006499: N-terminal protein myristoylation	1.34E-02
79	GO:0006811: ion transport	1.34E-02
80	GO:0010043: response to zinc ion	1.38E-02
81	GO:0034599: cellular response to oxidative stress	1.52E-02
82	GO:0006839: mitochondrial transport	1.62E-02
83	GO:0010114: response to red light	1.77E-02
84	GO:0009744: response to sucrose	1.77E-02
85	GO:0051707: response to other organism	1.77E-02
86	GO:0000209: protein polyubiquitination	1.82E-02
87	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.02E-02
88	GO:0009846: pollen germination	2.08E-02
89	GO:0051603: proteolysis involved in cellular protein catabolic process	2.24E-02
90	GO:0010224: response to UV-B	2.24E-02
91	GO:0006096: glycolytic process	2.46E-02
92	GO:0016569: covalent chromatin modification	2.69E-02
93	GO:0009555: pollen development	2.79E-02
94	GO:0045893: positive regulation of transcription, DNA-templated	3.20E-02
95	GO:0009058: biosynthetic process	3.42E-02
96	GO:0006511: ubiquitin-dependent protein catabolic process	3.78E-02
97	GO:0010150: leaf senescence	4.14E-02
98	GO:0010228: vegetative to reproductive phase transition of meristem	4.28E-02
99	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.49E-02
100	GO:0006470: protein dephosphorylation	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
2	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	7.90E-05
3	GO:0032266: phosphatidylinositol-3-phosphate binding	7.90E-05
4	GO:0009000: selenocysteine lyase activity	7.90E-05
5	GO:0050577: GDP-L-fucose synthase activity	7.90E-05
6	GO:0030942: endoplasmic reticulum signal peptide binding	7.90E-05
7	GO:0102293: pheophytinase b activity	7.90E-05
8	GO:1901677: phosphate transmembrane transporter activity	1.89E-04
9	GO:0047746: chlorophyllase activity	1.89E-04
10	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.89E-04
11	GO:0010280: UDP-L-rhamnose synthase activity	1.89E-04
12	GO:0000774: adenyl-nucleotide exchange factor activity	1.89E-04
13	GO:0052691: UDP-arabinopyranose mutase activity	1.89E-04
14	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.89E-04
15	GO:0015117: thiosulfate transmembrane transporter activity	1.89E-04
16	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	3.17E-04
17	GO:0005310: dicarboxylic acid transmembrane transporter activity	3.17E-04
18	GO:0015141: succinate transmembrane transporter activity	3.17E-04
19	GO:0015131: oxaloacetate transmembrane transporter activity	4.58E-04
20	GO:0016656: monodehydroascorbate reductase (NADH) activity	4.58E-04
21	GO:0017077: oxidative phosphorylation uncoupler activity	4.58E-04
22	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	4.58E-04
23	GO:0016853: isomerase activity	5.04E-04
24	GO:0016866: intramolecular transferase activity	6.09E-04
25	GO:0030151: molybdenum ion binding	7.72E-04
26	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	9.42E-04
27	GO:0008320: protein transmembrane transporter activity	1.31E-03
28	GO:0003872: 6-phosphofructokinase activity	1.31E-03
29	GO:0015140: malate transmembrane transporter activity	1.31E-03
30	GO:0008312: 7S RNA binding	1.51E-03
31	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.51E-03
32	GO:0030234: enzyme regulator activity	2.41E-03
33	GO:0015116: sulfate transmembrane transporter activity	2.92E-03
34	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.92E-03
35	GO:0031072: heat shock protein binding	3.18E-03
36	GO:0051082: unfolded protein binding	3.21E-03
37	GO:0004175: endopeptidase activity	3.45E-03
38	GO:0051536: iron-sulfur cluster binding	4.31E-03
39	GO:0043130: ubiquitin binding	4.31E-03
40	GO:0030170: pyridoxal phosphate binding	4.45E-03
41	GO:0051087: chaperone binding	4.61E-03
42	GO:0004298: threonine-type endopeptidase activity	4.92E-03
43	GO:0016760: cellulose synthase (UDP-forming) activity	5.56E-03
44	GO:0047134: protein-disulfide reductase activity	6.22E-03
45	GO:0050662: coenzyme binding	7.28E-03
46	GO:0004791: thioredoxin-disulfide reductase activity	7.28E-03
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.77E-03
48	GO:0051015: actin filament binding	8.77E-03
49	GO:0051213: dioxygenase activity	1.04E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.25E-02
51	GO:0044212: transcription regulatory region DNA binding	1.32E-02
52	GO:0003746: translation elongation factor activity	1.48E-02
53	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.48E-02
54	GO:0042393: histone binding	1.62E-02
55	GO:0005198: structural molecule activity	1.92E-02
56	GO:0016887: ATPase activity	2.44E-02
57	GO:0015035: protein disulfide oxidoreductase activity	2.87E-02
58	GO:0016829: lyase activity	3.49E-02
59	GO:0005507: copper ion binding	3.96E-02
60	GO:0015297: antiporter activity	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0000138: Golgi trans cisterna	7.90E-05
2	GO:0001405: presequence translocase-associated import motor	7.90E-05
3	GO:0000814: ESCRT II complex	1.89E-04
4	GO:0042406: extrinsic component of endoplasmic reticulum membrane	3.17E-04
5	GO:0030130: clathrin coat of trans-Golgi network vesicle	3.17E-04
6	GO:0030132: clathrin coat of coated pit	3.17E-04
7	GO:0032432: actin filament bundle	4.58E-04
8	GO:0005945: 6-phosphofructokinase complex	7.72E-04
9	GO:0005885: Arp2/3 protein complex	1.12E-03
10	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.31E-03
11	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.72E-03
12	GO:0005811: lipid particle	1.72E-03
13	GO:0008540: proteasome regulatory particle, base subcomplex	2.18E-03
14	GO:0000502: proteasome complex	2.27E-03
15	GO:0005884: actin filament	2.66E-03
16	GO:0005829: cytosol	2.90E-03
17	GO:0005795: Golgi stack	3.73E-03
18	GO:0005769: early endosome	4.02E-03
19	GO:0005741: mitochondrial outer membrane	4.92E-03
20	GO:0005839: proteasome core complex	4.92E-03
21	GO:0005789: endoplasmic reticulum membrane	5.50E-03
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.89E-03
23	GO:0005770: late endosome	6.92E-03
24	GO:0032580: Golgi cisterna membrane	9.16E-03
25	GO:0005778: peroxisomal membrane	9.56E-03
26	GO:0005739: mitochondrion	1.23E-02
27	GO:0031902: late endosome membrane	1.67E-02
28	GO:0016021: integral component of membrane	2.90E-02
29	GO:0005737: cytoplasm	3.19E-02
30	GO:0009543: chloroplast thylakoid lumen	3.30E-02
31	GO:0005773: vacuole	3.54E-02
32	GO:0005759: mitochondrial matrix	3.88E-02