Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
2GO:0072722: response to amitrole0.00E+00
3GO:0006903: vesicle targeting0.00E+00
4GO:0006216: cytidine catabolic process0.00E+00
5GO:0046680: response to DDT0.00E+00
6GO:2000117: negative regulation of cysteine-type endopeptidase activity0.00E+00
7GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
8GO:0010398: xylogalacturonan metabolic process0.00E+00
9GO:0006102: isocitrate metabolic process6.75E-06
10GO:0046686: response to cadmium ion9.00E-05
11GO:0006099: tricarboxylic acid cycle1.34E-04
12GO:0006886: intracellular protein transport2.29E-04
13GO:0010421: hydrogen peroxide-mediated programmed cell death2.82E-04
14GO:0000032: cell wall mannoprotein biosynthetic process2.82E-04
15GO:0042964: thioredoxin reduction2.82E-04
16GO:1900384: regulation of flavonol biosynthetic process2.82E-04
17GO:0030163: protein catabolic process4.10E-04
18GO:0015709: thiosulfate transport6.19E-04
19GO:0071422: succinate transmembrane transport6.19E-04
20GO:0046939: nucleotide phosphorylation6.19E-04
21GO:0006568: tryptophan metabolic process6.19E-04
22GO:0009805: coumarin biosynthetic process6.19E-04
23GO:0051645: Golgi localization6.19E-04
24GO:0010372: positive regulation of gibberellin biosynthetic process6.19E-04
25GO:0060151: peroxisome localization6.19E-04
26GO:0080026: response to indolebutyric acid6.19E-04
27GO:0006996: organelle organization6.19E-04
28GO:0015031: protein transport6.88E-04
29GO:0055046: microgametogenesis8.46E-04
30GO:0006499: N-terminal protein myristoylation8.83E-04
31GO:0090630: activation of GTPase activity1.00E-03
32GO:0006517: protein deglycosylation1.00E-03
33GO:0010272: response to silver ion1.00E-03
34GO:0033591: response to L-ascorbic acid1.00E-03
35GO:0009062: fatty acid catabolic process1.00E-03
36GO:0010359: regulation of anion channel activity1.00E-03
37GO:0051646: mitochondrion localization1.00E-03
38GO:0090436: leaf pavement cell development1.00E-03
39GO:0000162: tryptophan biosynthetic process1.18E-03
40GO:0000187: activation of MAPK activity1.44E-03
41GO:0009298: GDP-mannose biosynthetic process1.44E-03
42GO:0015729: oxaloacetate transport1.44E-03
43GO:0006612: protein targeting to membrane1.44E-03
44GO:0006893: Golgi to plasma membrane transport1.44E-03
45GO:0002679: respiratory burst involved in defense response1.44E-03
46GO:0080024: indolebutyric acid metabolic process1.44E-03
47GO:0006515: misfolded or incompletely synthesized protein catabolic process1.44E-03
48GO:0010227: floral organ abscission1.88E-03
49GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter1.92E-03
50GO:0010222: stem vascular tissue pattern formation1.92E-03
51GO:0009846: pollen germination1.92E-03
52GO:1902584: positive regulation of response to water deprivation1.92E-03
53GO:0006511: ubiquitin-dependent protein catabolic process1.97E-03
54GO:0009306: protein secretion2.04E-03
55GO:0051603: proteolysis involved in cellular protein catabolic process2.19E-03
56GO:0032957: inositol trisphosphate metabolic process2.46E-03
57GO:0006465: signal peptide processing2.46E-03
58GO:0045927: positive regulation of growth2.46E-03
59GO:0071423: malate transmembrane transport2.46E-03
60GO:0009823: cytokinin catabolic process2.46E-03
61GO:0098719: sodium ion import across plasma membrane2.46E-03
62GO:0006564: L-serine biosynthetic process2.46E-03
63GO:0005513: detection of calcium ion2.46E-03
64GO:0097428: protein maturation by iron-sulfur cluster transfer2.46E-03
65GO:0006096: glycolytic process2.60E-03
66GO:0006555: methionine metabolic process3.03E-03
67GO:0060918: auxin transport3.03E-03
68GO:0045040: protein import into mitochondrial outer membrane3.03E-03
69GO:0009228: thiamine biosynthetic process3.03E-03
70GO:0035435: phosphate ion transmembrane transport3.03E-03
71GO:0046855: inositol phosphate dephosphorylation3.03E-03
72GO:0009972: cytidine deamination3.03E-03
73GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.03E-03
74GO:0019509: L-methionine salvage from methylthioadenosine3.65E-03
75GO:0009612: response to mechanical stimulus3.65E-03
76GO:0009082: branched-chain amino acid biosynthetic process3.65E-03
77GO:0034389: lipid particle organization3.65E-03
78GO:0009099: valine biosynthetic process3.65E-03
79GO:0009554: megasporogenesis3.65E-03
80GO:0080113: regulation of seed growth3.65E-03
81GO:0080186: developmental vegetative growth4.30E-03
82GO:0071669: plant-type cell wall organization or biogenesis4.30E-03
83GO:0008272: sulfate transport4.30E-03
84GO:0009615: response to virus4.59E-03
85GO:0009058: biosynthetic process4.68E-03
86GO:0006402: mRNA catabolic process4.99E-03
87GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.99E-03
88GO:0006605: protein targeting4.99E-03
89GO:0006491: N-glycan processing4.99E-03
90GO:0050821: protein stabilization4.99E-03
91GO:0009627: systemic acquired resistance5.12E-03
92GO:0006888: ER to Golgi vesicle-mediated transport5.40E-03
93GO:0006972: hyperosmotic response5.72E-03
94GO:0009699: phenylpropanoid biosynthetic process5.72E-03
95GO:0006002: fructose 6-phosphate metabolic process5.72E-03
96GO:0019430: removal of superoxide radicals5.72E-03
97GO:0060321: acceptance of pollen5.72E-03
98GO:0006367: transcription initiation from RNA polymerase II promoter5.72E-03
99GO:0010120: camalexin biosynthetic process5.72E-03
100GO:0009097: isoleucine biosynthetic process5.72E-03
101GO:0009751: response to salicylic acid6.06E-03
102GO:0048767: root hair elongation6.29E-03
103GO:0046685: response to arsenic-containing substance6.48E-03
104GO:0009821: alkaloid biosynthetic process6.48E-03
105GO:0009407: toxin catabolic process6.60E-03
106GO:0051453: regulation of intracellular pH7.28E-03
107GO:0009098: leucine biosynthetic process7.28E-03
108GO:0048354: mucilage biosynthetic process involved in seed coat development7.28E-03
109GO:0006032: chitin catabolic process8.11E-03
110GO:0009688: abscisic acid biosynthetic process8.11E-03
111GO:0043069: negative regulation of programmed cell death8.11E-03
112GO:0046856: phosphatidylinositol dephosphorylation8.97E-03
113GO:0009682: induced systemic resistance8.97E-03
114GO:0043085: positive regulation of catalytic activity8.97E-03
115GO:0000272: polysaccharide catabolic process8.97E-03
116GO:0006890: retrograde vesicle-mediated transport, Golgi to ER9.88E-03
117GO:0006790: sulfur compound metabolic process9.88E-03
118GO:0016925: protein sumoylation9.88E-03
119GO:0000209: protein polyubiquitination1.02E-02
120GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.08E-02
121GO:0030048: actin filament-based movement1.08E-02
122GO:0010102: lateral root morphogenesis1.08E-02
123GO:0006626: protein targeting to mitochondrion1.08E-02
124GO:0006807: nitrogen compound metabolic process1.08E-02
125GO:0048467: gynoecium development1.18E-02
126GO:0034605: cellular response to heat1.18E-02
127GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.19E-02
128GO:0046854: phosphatidylinositol phosphorylation1.28E-02
129GO:0010053: root epidermal cell differentiation1.28E-02
130GO:0007031: peroxisome organization1.28E-02
131GO:0007030: Golgi organization1.28E-02
132GO:0019853: L-ascorbic acid biosynthetic process1.28E-02
133GO:0090351: seedling development1.28E-02
134GO:0034976: response to endoplasmic reticulum stress1.38E-02
135GO:0006338: chromatin remodeling1.48E-02
136GO:0016192: vesicle-mediated transport1.62E-02
137GO:0009626: plant-type hypersensitive response1.67E-02
138GO:0015992: proton transport1.70E-02
139GO:0019915: lipid storage1.70E-02
140GO:0016998: cell wall macromolecule catabolic process1.70E-02
141GO:0009651: response to salt stress1.78E-02
142GO:0019748: secondary metabolic process1.81E-02
143GO:0009814: defense response, incompatible interaction1.81E-02
144GO:0030433: ubiquitin-dependent ERAD pathway1.81E-02
145GO:0007005: mitochondrion organization1.81E-02
146GO:0045454: cell redox homeostasis1.90E-02
147GO:0009561: megagametogenesis2.05E-02
148GO:0042147: retrograde transport, endosome to Golgi2.17E-02
149GO:0051028: mRNA transport2.17E-02
150GO:0042631: cellular response to water deprivation2.29E-02
151GO:0010051: xylem and phloem pattern formation2.29E-02
152GO:0045489: pectin biosynthetic process2.42E-02
153GO:0006662: glycerol ether metabolic process2.42E-02
154GO:0006814: sodium ion transport2.54E-02
155GO:0009646: response to absence of light2.54E-02
156GO:0055114: oxidation-reduction process2.66E-02
157GO:0009851: auxin biosynthetic process2.67E-02
158GO:0006635: fatty acid beta-oxidation2.81E-02
159GO:0031047: gene silencing by RNA2.94E-02
160GO:0010090: trichome morphogenesis3.08E-02
161GO:0019760: glucosinolate metabolic process3.22E-02
162GO:0006464: cellular protein modification process3.22E-02
163GO:0006914: autophagy3.22E-02
164GO:0006904: vesicle docking involved in exocytosis3.36E-02
165GO:0071805: potassium ion transmembrane transport3.36E-02
166GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.65E-02
167GO:0009816: defense response to bacterium, incompatible interaction3.80E-02
168GO:0009617: response to bacterium3.89E-02
169GO:0042742: defense response to bacterium4.17E-02
170GO:0016049: cell growth4.25E-02
171GO:0009817: defense response to fungus, incompatible interaction4.41E-02
172GO:0010043: response to zinc ion4.88E-02
173GO:0007568: aging4.88E-02
174GO:0010119: regulation of stomatal movement4.88E-02
175GO:0009631: cold acclimation4.88E-02
RankGO TermAdjusted P value
1GO:0016504: peptidase activator activity0.00E+00
2GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
3GO:0070577: lysine-acetylated histone binding0.00E+00
4GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
5GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group0.00E+00
6GO:0047844: deoxycytidine deaminase activity0.00E+00
7GO:0004449: isocitrate dehydrogenase (NAD+) activity1.24E-07
8GO:0004298: threonine-type endopeptidase activity1.29E-04
9GO:0004425: indole-3-glycerol-phosphate synthase activity2.82E-04
10GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity2.82E-04
11GO:0046030: inositol trisphosphate phosphatase activity2.82E-04
12GO:0048037: cofactor binding2.82E-04
13GO:0004476: mannose-6-phosphate isomerase activity2.82E-04
14GO:0019786: Atg8-specific protease activity2.82E-04
15GO:0004518: nuclease activity3.77E-04
16GO:0030955: potassium ion binding4.86E-04
17GO:0004743: pyruvate kinase activity4.86E-04
18GO:0052739: phosphatidylserine 1-acylhydrolase activity6.19E-04
19GO:0010297: heteropolysaccharide binding6.19E-04
20GO:0051879: Hsp90 protein binding6.19E-04
21GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity6.19E-04
22GO:0004617: phosphoglycerate dehydrogenase activity6.19E-04
23GO:0008805: carbon-monoxide oxygenase activity6.19E-04
24GO:0004775: succinate-CoA ligase (ADP-forming) activity6.19E-04
25GO:0019172: glyoxalase III activity6.19E-04
26GO:0070361: mitochondrial light strand promoter anti-sense binding6.19E-04
27GO:0019779: Atg8 activating enzyme activity6.19E-04
28GO:0030742: GTP-dependent protein binding6.19E-04
29GO:1901677: phosphate transmembrane transporter activity6.19E-04
30GO:0015117: thiosulfate transmembrane transporter activity6.19E-04
31GO:0004640: phosphoribosylanthranilate isomerase activity6.19E-04
32GO:0004776: succinate-CoA ligase (GDP-forming) activity6.19E-04
33GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.00E-03
34GO:0005310: dicarboxylic acid transmembrane transporter activity1.00E-03
35GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.00E-03
36GO:0015141: succinate transmembrane transporter activity1.00E-03
37GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity1.00E-03
38GO:0003746: translation elongation factor activity1.05E-03
39GO:0004190: aspartic-type endopeptidase activity1.06E-03
40GO:0004165: dodecenoyl-CoA delta-isomerase activity1.44E-03
41GO:0052654: L-leucine transaminase activity1.44E-03
42GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity1.44E-03
43GO:0017077: oxidative phosphorylation uncoupler activity1.44E-03
44GO:0052655: L-valine transaminase activity1.44E-03
45GO:0019201: nucleotide kinase activity1.44E-03
46GO:0015131: oxaloacetate transmembrane transporter activity1.44E-03
47GO:0004445: inositol-polyphosphate 5-phosphatase activity1.44E-03
48GO:0052656: L-isoleucine transaminase activity1.44E-03
49GO:0051287: NAD binding1.83E-03
50GO:0070628: proteasome binding1.92E-03
51GO:0004084: branched-chain-amino-acid transaminase activity1.92E-03
52GO:0008022: protein C-terminus binding1.92E-03
53GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.92E-03
54GO:0004031: aldehyde oxidase activity1.92E-03
55GO:0050302: indole-3-acetaldehyde oxidase activity1.92E-03
56GO:0019776: Atg8 ligase activity1.92E-03
57GO:0000287: magnesium ion binding2.40E-03
58GO:0008374: O-acyltransferase activity2.46E-03
59GO:0019139: cytokinin dehydrogenase activity2.46E-03
60GO:0017137: Rab GTPase binding2.46E-03
61GO:0004040: amidase activity2.46E-03
62GO:0031386: protein tag2.46E-03
63GO:0004791: thioredoxin-disulfide reductase activity2.77E-03
64GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.03E-03
65GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.03E-03
66GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity3.03E-03
67GO:0035252: UDP-xylosyltransferase activity3.03E-03
68GO:0036402: proteasome-activating ATPase activity3.03E-03
69GO:0004126: cytidine deaminase activity3.65E-03
70GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.65E-03
71GO:0004017: adenylate kinase activity3.65E-03
72GO:0004656: procollagen-proline 4-dioxygenase activity3.65E-03
73GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.08E-03
74GO:0003872: 6-phosphofructokinase activity4.30E-03
75GO:0015140: malate transmembrane transporter activity4.30E-03
76GO:0008320: protein transmembrane transporter activity4.30E-03
77GO:0043295: glutathione binding4.30E-03
78GO:0004714: transmembrane receptor protein tyrosine kinase activity4.99E-03
79GO:0004708: MAP kinase kinase activity4.99E-03
80GO:0008375: acetylglucosaminyltransferase activity5.12E-03
81GO:0003824: catalytic activity5.21E-03
82GO:0016798: hydrolase activity, acting on glycosyl bonds5.40E-03
83GO:0008970: phosphatidylcholine 1-acylhydrolase activity5.72E-03
84GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity5.98E-03
85GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.92E-03
86GO:0016844: strictosidine synthase activity7.28E-03
87GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors7.59E-03
88GO:0004568: chitinase activity8.11E-03
89GO:0008047: enzyme activator activity8.11E-03
90GO:0008559: xenobiotic-transporting ATPase activity8.97E-03
91GO:0015386: potassium:proton antiporter activity8.97E-03
92GO:0004364: glutathione transferase activity9.41E-03
93GO:0015116: sulfate transmembrane transporter activity9.88E-03
94GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity9.88E-03
95GO:0031072: heat shock protein binding1.08E-02
96GO:0005198: structural molecule activity1.10E-02
97GO:0003774: motor activity1.18E-02
98GO:0031624: ubiquitin conjugating enzyme binding1.18E-02
99GO:0008131: primary amine oxidase activity1.18E-02
100GO:0017025: TBP-class protein binding1.28E-02
101GO:0008061: chitin binding1.28E-02
102GO:0050660: flavin adenine dinucleotide binding1.39E-02
103GO:0031418: L-ascorbic acid binding1.48E-02
104GO:0008233: peptidase activity1.48E-02
105GO:0000166: nucleotide binding1.48E-02
106GO:0061630: ubiquitin protein ligase activity1.62E-02
107GO:0004176: ATP-dependent peptidase activity1.70E-02
108GO:0003756: protein disulfide isomerase activity2.05E-02
109GO:0004722: protein serine/threonine phosphatase activity2.14E-02
110GO:0047134: protein-disulfide reductase activity2.17E-02
111GO:0004402: histone acetyltransferase activity2.29E-02
112GO:0005199: structural constituent of cell wall2.42E-02
113GO:0008565: protein transporter activity2.83E-02
114GO:0015385: sodium:proton antiporter activity3.08E-02
115GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.08E-02
116GO:0008237: metallopeptidase activity3.36E-02
117GO:0016597: amino acid binding3.50E-02
118GO:0051213: dioxygenase activity3.65E-02
119GO:0009931: calcium-dependent protein serine/threonine kinase activity3.95E-02
120GO:0004683: calmodulin-dependent protein kinase activity4.10E-02
121GO:0008236: serine-type peptidase activity4.25E-02
122GO:0016887: ATPase activity4.26E-02
123GO:0005096: GTPase activator activity4.56E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol2.03E-06
2GO:0000502: proteasome complex2.05E-06
3GO:0005839: proteasome core complex5.06E-06
4GO:0016442: RISC complex2.82E-04
5GO:0031090: organelle membrane4.10E-04
6GO:0030130: clathrin coat of trans-Golgi network vesicle1.00E-03
7GO:0030132: clathrin coat of coated pit1.00E-03
8GO:0009530: primary cell wall1.00E-03
9GO:0005775: vacuolar lumen1.44E-03
10GO:0030660: Golgi-associated vesicle membrane1.92E-03
11GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.92E-03
12GO:0005776: autophagosome1.92E-03
13GO:0005744: mitochondrial inner membrane presequence translocase complex2.04E-03
14GO:0005945: 6-phosphofructokinase complex2.46E-03
15GO:0005783: endoplasmic reticulum2.92E-03
16GO:0030127: COPII vesicle coat3.03E-03
17GO:0030904: retromer complex3.03E-03
18GO:0005768: endosome3.52E-03
19GO:0030173: integral component of Golgi membrane3.65E-03
20GO:0031597: cytosolic proteasome complex3.65E-03
21GO:0032580: Golgi cisterna membrane3.85E-03
22GO:0031595: nuclear proteasome complex4.30E-03
23GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.30E-03
24GO:0005794: Golgi apparatus4.78E-03
25GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.99E-03
26GO:0031982: vesicle4.99E-03
27GO:0000421: autophagosome membrane4.99E-03
28GO:0019773: proteasome core complex, alpha-subunit complex5.72E-03
29GO:0005742: mitochondrial outer membrane translocase complex5.72E-03
30GO:0005811: lipid particle5.72E-03
31GO:0010494: cytoplasmic stress granule6.48E-03
32GO:0031901: early endosome membrane6.48E-03
33GO:0008540: proteasome regulatory particle, base subcomplex7.28E-03
34GO:0005774: vacuolar membrane7.42E-03
35GO:0005737: cytoplasm8.03E-03
36GO:0016459: myosin complex8.11E-03
37GO:0005765: lysosomal membrane8.97E-03
38GO:0008541: proteasome regulatory particle, lid subcomplex8.97E-03
39GO:0048471: perinuclear region of cytoplasm8.97E-03
40GO:0005802: trans-Golgi network9.24E-03
41GO:0005635: nuclear envelope1.42E-02
42GO:0031410: cytoplasmic vesicle1.81E-02
43GO:0005623: cell2.43E-02
44GO:0016021: integral component of membrane2.81E-02
45GO:0016592: mediator complex2.94E-02
46GO:0000145: exocyst2.94E-02
47GO:0005759: mitochondrial matrix2.97E-02
48GO:0005778: peroxisomal membrane3.36E-02
49GO:0000932: P-body3.65E-02
50GO:0005788: endoplasmic reticulum lumen3.80E-02
51GO:0005886: plasma membrane4.26E-02
52GO:0009707: chloroplast outer membrane4.41E-02
53GO:0000151: ubiquitin ligase complex4.41E-02
54GO:0005643: nuclear pore4.41E-02
55GO:0005773: vacuole4.50E-02
56GO:0000325: plant-type vacuole4.88E-02
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Gene type



Gene DE type