co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
6	GO:0046486: glycerolipid metabolic process	0.00E+00
7	GO:0006907: pinocytosis	0.00E+00
8	GO:0045014: negative regulation of transcription by glucose	0.00E+00
9	GO:0000819: sister chromatid segregation	0.00E+00
10	GO:0009733: response to auxin	1.23E-04
11	GO:0010583: response to cyclopentenone	2.13E-04
12	GO:0009658: chloroplast organization	2.42E-04
13	GO:0006438: valyl-tRNA aminoacylation	6.01E-04
14	GO:0032958: inositol phosphate biosynthetic process	6.01E-04
15	GO:0010070: zygote asymmetric cell division	6.01E-04
16	GO:0034757: negative regulation of iron ion transport	6.01E-04
17	GO:0045786: negative regulation of cell cycle	6.01E-04
18	GO:0010726: positive regulation of hydrogen peroxide metabolic process	6.01E-04
19	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	6.01E-04
20	GO:0009686: gibberellin biosynthetic process	7.38E-04
21	GO:0046620: regulation of organ growth	8.40E-04
22	GO:0009926: auxin polar transport	1.15E-03
23	GO:0007018: microtubule-based movement	1.21E-03
24	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.29E-03
25	GO:0061062: regulation of nematode larval development	1.29E-03
26	GO:0006423: cysteinyl-tRNA aminoacylation	1.29E-03
27	GO:0010271: regulation of chlorophyll catabolic process	1.29E-03
28	GO:0006650: glycerophospholipid metabolic process	1.29E-03
29	GO:0001736: establishment of planar polarity	1.29E-03
30	GO:0080009: mRNA methylation	1.29E-03
31	GO:0009786: regulation of asymmetric cell division	1.29E-03
32	GO:0031648: protein destabilization	1.29E-03
33	GO:0043039: tRNA aminoacylation	1.29E-03
34	GO:0048829: root cap development	1.69E-03
35	GO:0009734: auxin-activated signaling pathway	2.06E-03
36	GO:0080117: secondary growth	2.13E-03
37	GO:0006518: peptide metabolic process	2.13E-03
38	GO:0042780: tRNA 3'-end processing	2.13E-03
39	GO:0030029: actin filament-based process	2.13E-03
40	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.13E-03
41	GO:0045910: negative regulation of DNA recombination	2.13E-03
42	GO:0090506: axillary shoot meristem initiation	2.13E-03
43	GO:0046168: glycerol-3-phosphate catabolic process	2.13E-03
44	GO:0071555: cell wall organization	2.21E-03
45	GO:0009887: animal organ morphogenesis	2.87E-03
46	GO:0009266: response to temperature stimulus	2.87E-03
47	GO:0006424: glutamyl-tRNA aminoacylation	3.09E-03
48	GO:0016556: mRNA modification	3.09E-03
49	GO:0010321: regulation of vegetative phase change	3.09E-03
50	GO:0045017: glycerolipid biosynthetic process	3.09E-03
51	GO:0006020: inositol metabolic process	3.09E-03
52	GO:0010239: chloroplast mRNA processing	3.09E-03
53	GO:0043207: response to external biotic stimulus	3.09E-03
54	GO:0007276: gamete generation	3.09E-03
55	GO:0006072: glycerol-3-phosphate metabolic process	3.09E-03
56	GO:0010311: lateral root formation	3.47E-03
57	GO:0006863: purine nucleobase transport	3.60E-03
58	GO:0042991: transcription factor import into nucleus	4.17E-03
59	GO:0006021: inositol biosynthetic process	4.17E-03
60	GO:0009956: radial pattern formation	4.17E-03
61	GO:0009755: hormone-mediated signaling pathway	4.17E-03
62	GO:0048629: trichome patterning	4.17E-03
63	GO:0006418: tRNA aminoacylation for protein translation	4.41E-03
64	GO:0030001: metal ion transport	5.21E-03
65	GO:0009696: salicylic acid metabolic process	5.35E-03
66	GO:0045487: gibberellin catabolic process	5.35E-03
67	GO:0048497: maintenance of floral organ identity	5.35E-03
68	GO:0010438: cellular response to sulfur starvation	5.35E-03
69	GO:0071215: cellular response to abscisic acid stimulus	5.81E-03
70	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.89E-03
71	GO:0042127: regulation of cell proliferation	6.32E-03
72	GO:1902456: regulation of stomatal opening	6.64E-03
73	GO:0042793: transcription from plastid promoter	6.64E-03
74	GO:0048831: regulation of shoot system development	6.64E-03
75	GO:0010190: cytochrome b6f complex assembly	6.64E-03
76	GO:0003006: developmental process involved in reproduction	6.64E-03
77	GO:0010942: positive regulation of cell death	6.64E-03
78	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	6.64E-03
79	GO:0016554: cytidine to uridine editing	6.64E-03
80	GO:0016567: protein ubiquitination	7.46E-03
81	GO:0009793: embryo development ending in seed dormancy	8.01E-03
82	GO:0009958: positive gravitropism	8.01E-03
83	GO:0031930: mitochondria-nucleus signaling pathway	8.02E-03
84	GO:0048509: regulation of meristem development	8.02E-03
85	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	8.02E-03
86	GO:0009736: cytokinin-activated signaling pathway	8.95E-03
87	GO:0010098: suspensor development	9.51E-03
88	GO:0010444: guard mother cell differentiation	9.51E-03
89	GO:0000082: G1/S transition of mitotic cell cycle	9.51E-03
90	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	9.51E-03
91	GO:0000712: resolution of meiotic recombination intermediates	9.51E-03
92	GO:0007050: cell cycle arrest	9.51E-03
93	GO:1900056: negative regulation of leaf senescence	9.51E-03
94	GO:0030497: fatty acid elongation	9.51E-03
95	GO:0071554: cell wall organization or biogenesis	9.92E-03
96	GO:0009416: response to light stimulus	1.02E-02
97	GO:0009819: drought recovery	1.11E-02
98	GO:0042255: ribosome assembly	1.11E-02
99	GO:0006353: DNA-templated transcription, termination	1.11E-02
100	GO:0009704: de-etiolation	1.11E-02
101	GO:2000070: regulation of response to water deprivation	1.11E-02
102	GO:0010492: maintenance of shoot apical meristem identity	1.11E-02
103	GO:0000105: histidine biosynthetic process	1.11E-02
104	GO:0006402: mRNA catabolic process	1.11E-02
105	GO:0010439: regulation of glucosinolate biosynthetic process	1.11E-02
106	GO:0032544: plastid translation	1.27E-02
107	GO:0071482: cellular response to light stimulus	1.27E-02
108	GO:0007186: G-protein coupled receptor signaling pathway	1.27E-02
109	GO:0048507: meristem development	1.45E-02
110	GO:0046916: cellular transition metal ion homeostasis	1.45E-02
111	GO:0000373: Group II intron splicing	1.45E-02
112	GO:0048589: developmental growth	1.45E-02
113	GO:0009056: catabolic process	1.45E-02
114	GO:0051865: protein autoubiquitination	1.45E-02
115	GO:0009627: systemic acquired resistance	1.61E-02
116	GO:0016571: histone methylation	1.63E-02
117	GO:0016573: histone acetylation	1.63E-02
118	GO:1900865: chloroplast RNA modification	1.63E-02
119	GO:0048573: photoperiodism, flowering	1.70E-02
120	GO:0006782: protoporphyrinogen IX biosynthetic process	1.82E-02
121	GO:0009641: shade avoidance	1.82E-02
122	GO:0006298: mismatch repair	1.82E-02
123	GO:0006949: syncytium formation	1.82E-02
124	GO:0006259: DNA metabolic process	1.82E-02
125	GO:0010192: mucilage biosynthetic process	1.82E-02
126	GO:0010629: negative regulation of gene expression	1.82E-02
127	GO:0009817: defense response to fungus, incompatible interaction	1.89E-02
128	GO:0000160: phosphorelay signal transduction system	1.98E-02
129	GO:0009682: induced systemic resistance	2.02E-02
130	GO:0006265: DNA topological change	2.02E-02
131	GO:0008285: negative regulation of cell proliferation	2.02E-02
132	GO:0048765: root hair cell differentiation	2.02E-02
133	GO:0010152: pollen maturation	2.22E-02
134	GO:0045037: protein import into chloroplast stroma	2.22E-02
135	GO:0010582: floral meristem determinacy	2.22E-02
136	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.22E-02
137	GO:0006790: sulfur compound metabolic process	2.22E-02
138	GO:0006312: mitotic recombination	2.22E-02
139	GO:0012501: programmed cell death	2.22E-02
140	GO:0005983: starch catabolic process	2.22E-02
141	GO:0010102: lateral root morphogenesis	2.44E-02
142	GO:2000028: regulation of photoperiodism, flowering	2.44E-02
143	GO:0006468: protein phosphorylation	2.64E-02
144	GO:0040008: regulation of growth	2.65E-02
145	GO:0010020: chloroplast fission	2.66E-02
146	GO:0009933: meristem structural organization	2.66E-02
147	GO:0010223: secondary shoot formation	2.66E-02
148	GO:0010540: basipetal auxin transport	2.66E-02
149	GO:0006302: double-strand break repair	2.66E-02
150	GO:0048467: gynoecium development	2.66E-02
151	GO:0006355: regulation of transcription, DNA-templated	2.85E-02
152	GO:0090351: seedling development	2.88E-02
153	GO:0046854: phosphatidylinositol phosphorylation	2.88E-02
154	GO:0009825: multidimensional cell growth	2.88E-02
155	GO:0009451: RNA modification	2.89E-02
156	GO:0006636: unsaturated fatty acid biosynthetic process	3.11E-02
157	GO:0009833: plant-type primary cell wall biogenesis	3.11E-02
158	GO:0042546: cell wall biogenesis	3.21E-02
159	GO:0009739: response to gibberellin	3.23E-02
160	GO:0006470: protein dephosphorylation	3.32E-02
161	GO:0080147: root hair cell development	3.35E-02
162	GO:0006338: chromatin remodeling	3.35E-02
163	GO:0051017: actin filament bundle assembly	3.35E-02
164	GO:0005992: trehalose biosynthetic process	3.35E-02
165	GO:0009636: response to toxic substance	3.47E-02
166	GO:0009965: leaf morphogenesis	3.47E-02
167	GO:0019953: sexual reproduction	3.60E-02
168	GO:0006874: cellular calcium ion homeostasis	3.60E-02
169	GO:0048364: root development	3.65E-02
170	GO:0006351: transcription, DNA-templated	3.65E-02
171	GO:0005975: carbohydrate metabolic process	3.68E-02
172	GO:0051321: meiotic cell cycle	3.85E-02
173	GO:0016114: terpenoid biosynthetic process	3.85E-02
174	GO:0003333: amino acid transmembrane transport	3.85E-02
175	GO:0009664: plant-type cell wall organization	3.87E-02
176	GO:0016226: iron-sulfur cluster assembly	4.10E-02
177	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.10E-02
178	GO:0007005: mitochondrion organization	4.10E-02
179	GO:0010082: regulation of root meristem growth	4.36E-02
180	GO:0001944: vasculature development	4.36E-02
181	GO:0009625: response to insect	4.36E-02
182	GO:0010091: trichome branching	4.63E-02
183	GO:0048443: stamen development	4.63E-02
184	GO:0016117: carotenoid biosynthetic process	4.90E-02
185	GO:0070417: cellular response to cold	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
6	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
7	GO:0071633: dihydroceramidase activity	0.00E+00
8	GO:0008805: carbon-monoxide oxygenase activity	1.57E-05
9	GO:0010011: auxin binding	1.87E-04
10	GO:0004818: glutamate-tRNA ligase activity	6.01E-04
11	GO:0004832: valine-tRNA ligase activity	6.01E-04
12	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	6.01E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.01E-04
14	GO:0000829: inositol heptakisphosphate kinase activity	6.01E-04
15	GO:0005227: calcium activated cation channel activity	6.01E-04
16	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.01E-04
17	GO:0000828: inositol hexakisphosphate kinase activity	6.01E-04
18	GO:0004519: endonuclease activity	1.17E-03
19	GO:0052833: inositol monophosphate 4-phosphatase activity	1.29E-03
20	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.29E-03
21	GO:0019156: isoamylase activity	1.29E-03
22	GO:0050736: O-malonyltransferase activity	1.29E-03
23	GO:0009884: cytokinin receptor activity	1.29E-03
24	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.29E-03
25	GO:0010296: prenylcysteine methylesterase activity	1.29E-03
26	GO:0004047: aminomethyltransferase activity	1.29E-03
27	GO:0052832: inositol monophosphate 3-phosphatase activity	1.29E-03
28	GO:0004817: cysteine-tRNA ligase activity	1.29E-03
29	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.29E-03
30	GO:0004109: coproporphyrinogen oxidase activity	1.29E-03
31	GO:0008934: inositol monophosphate 1-phosphatase activity	1.29E-03
32	GO:0004518: nuclease activity	1.57E-03
33	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.13E-03
34	GO:0005034: osmosensor activity	2.13E-03
35	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	2.13E-03
36	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.13E-03
37	GO:0004722: protein serine/threonine phosphatase activity	2.63E-03
38	GO:0003916: DNA topoisomerase activity	3.09E-03
39	GO:0080031: methyl salicylate esterase activity	3.09E-03
40	GO:0001872: (1->3)-beta-D-glucan binding	3.09E-03
41	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.09E-03
42	GO:0003723: RNA binding	3.60E-03
43	GO:0019199: transmembrane receptor protein kinase activity	4.17E-03
44	GO:0004930: G-protein coupled receptor activity	4.17E-03
45	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.17E-03
46	GO:0010328: auxin influx transmembrane transporter activity	4.17E-03
47	GO:0005345: purine nucleobase transmembrane transporter activity	4.41E-03
48	GO:0008408: 3'-5' exonuclease activity	4.85E-03
49	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.35E-03
50	GO:0004523: RNA-DNA hybrid ribonuclease activity	5.35E-03
51	GO:0004556: alpha-amylase activity	6.64E-03
52	GO:0030983: mismatched DNA binding	6.64E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	6.64E-03
54	GO:0004709: MAP kinase kinase kinase activity	6.64E-03
55	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	6.64E-03
56	GO:0030332: cyclin binding	6.64E-03
57	GO:0043621: protein self-association	6.75E-03
58	GO:0004812: aminoacyl-tRNA ligase activity	6.86E-03
59	GO:0019900: kinase binding	8.02E-03
60	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.02E-03
61	GO:0016832: aldehyde-lyase activity	8.02E-03
62	GO:0003777: microtubule motor activity	1.02E-02
63	GO:0051015: actin filament binding	1.13E-02
64	GO:0016759: cellulose synthase activity	1.20E-02
65	GO:0046914: transition metal ion binding	1.27E-02
66	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.27E-02
67	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.27E-02
68	GO:0005200: structural constituent of cytoskeleton	1.28E-02
69	GO:0003779: actin binding	1.35E-02
70	GO:0016413: O-acetyltransferase activity	1.36E-02
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.75E-02
72	GO:0004673: protein histidine kinase activity	1.82E-02
73	GO:0004805: trehalose-phosphatase activity	1.82E-02
74	GO:0004222: metalloendopeptidase activity	2.08E-02
75	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.10E-02
76	GO:0000049: tRNA binding	2.22E-02
77	GO:0000155: phosphorelay sensor kinase activity	2.44E-02
78	GO:0003725: double-stranded RNA binding	2.44E-02
79	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.62E-02
80	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.66E-02
81	GO:0004871: signal transducer activity	2.71E-02
82	GO:0004674: protein serine/threonine kinase activity	2.80E-02
83	GO:0008061: chitin binding	2.88E-02
84	GO:0003712: transcription cofactor activity	2.88E-02
85	GO:0004970: ionotropic glutamate receptor activity	2.88E-02
86	GO:0005217: intracellular ligand-gated ion channel activity	2.88E-02
87	GO:0004190: aspartic-type endopeptidase activity	2.88E-02
88	GO:0016301: kinase activity	2.90E-02
89	GO:0008134: transcription factor binding	3.35E-02
90	GO:0031418: L-ascorbic acid binding	3.35E-02
91	GO:0051087: chaperone binding	3.60E-02
92	GO:0043424: protein histidine kinase binding	3.60E-02
93	GO:0042802: identical protein binding	3.78E-02
94	GO:0009055: electron carrier activity	3.80E-02
95	GO:0004707: MAP kinase activity	3.85E-02
96	GO:0033612: receptor serine/threonine kinase binding	3.85E-02
97	GO:0010333: terpene synthase activity	3.85E-02
98	GO:0008094: DNA-dependent ATPase activity	3.85E-02
99	GO:0046872: metal ion binding	3.90E-02
100	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.10E-02
101	GO:0016298: lipase activity	4.30E-02
102	GO:0016760: cellulose synthase (UDP-forming) activity	4.36E-02
103	GO:0003727: single-stranded RNA binding	4.63E-02
104	GO:0016788: hydrolase activity, acting on ester bonds	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0000791: euchromatin	6.01E-04
5	GO:0009986: cell surface	6.75E-04
6	GO:0005871: kinesin complex	9.09E-04
7	GO:0009513: etioplast	1.29E-03
8	GO:0031357: integral component of chloroplast inner membrane	1.29E-03
9	GO:0030870: Mre11 complex	1.29E-03
10	GO:0009569: chloroplast starch grain	1.29E-03
11	GO:0009509: chromoplast	2.13E-03
12	GO:0030139: endocytic vesicle	2.13E-03
13	GO:0009331: glycerol-3-phosphate dehydrogenase complex	3.09E-03
14	GO:0009531: secondary cell wall	3.09E-03
15	GO:0032585: multivesicular body membrane	3.09E-03
16	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.17E-03
17	GO:0000795: synaptonemal complex	5.35E-03
18	GO:0015629: actin cytoskeleton	5.81E-03
19	GO:0009501: amyloplast	1.11E-02
20	GO:0009707: chloroplast outer membrane	1.89E-02
21	GO:0005884: actin filament	2.02E-02
22	GO:0009508: plastid chromosome	2.44E-02
23	GO:0030095: chloroplast photosystem II	2.66E-02
24	GO:0005886: plasma membrane	2.70E-02
25	GO:0090406: pollen tube	3.09E-02
26	GO:0005875: microtubule associated complex	3.11E-02
27	GO:0005856: cytoskeleton	3.47E-02
28	GO:0009654: photosystem II oxygen evolving complex	3.60E-02
29	GO:0009532: plastid stroma	3.85E-02
30	GO:0046658: anchored component of plasma membrane	3.98E-02
31	GO:0009507: chloroplast	4.85E-02