co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0006114: glycerol biosynthetic process	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
6	GO:0033528: S-methylmethionine cycle	0.00E+00
7	GO:0043255: regulation of carbohydrate biosynthetic process	8.68E-07
8	GO:0051322: anaphase	1.44E-05
9	GO:0045010: actin nucleation	8.68E-05
10	GO:0046777: protein autophosphorylation	1.08E-04
11	GO:0043087: regulation of GTPase activity	1.31E-04
12	GO:0000066: mitochondrial ornithine transport	1.31E-04
13	GO:0048508: embryonic meristem development	1.31E-04
14	GO:0048657: anther wall tapetum cell differentiation	1.31E-04
15	GO:0000012: single strand break repair	1.31E-04
16	GO:0042547: cell wall modification involved in multidimensional cell growth	1.31E-04
17	GO:0015798: myo-inositol transport	1.31E-04
18	GO:0072387: flavin adenine dinucleotide metabolic process	1.31E-04
19	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.31E-04
20	GO:0009638: phototropism	1.62E-04
21	GO:0030244: cellulose biosynthetic process	1.92E-04
22	GO:0010343: singlet oxygen-mediated programmed cell death	3.03E-04
23	GO:1901529: positive regulation of anion channel activity	3.03E-04
24	GO:0009945: radial axis specification	3.03E-04
25	GO:0006435: threonyl-tRNA aminoacylation	3.03E-04
26	GO:0080005: photosystem stoichiometry adjustment	3.03E-04
27	GO:0010617: circadian regulation of calcium ion oscillation	3.03E-04
28	GO:0000256: allantoin catabolic process	3.03E-04
29	GO:0099402: plant organ development	3.03E-04
30	GO:0010207: photosystem II assembly	3.34E-04
31	GO:0090351: seedling development	3.75E-04
32	GO:1902448: positive regulation of shade avoidance	4.99E-04
33	GO:1901672: positive regulation of systemic acquired resistance	4.99E-04
34	GO:0010136: ureide catabolic process	4.99E-04
35	GO:0017006: protein-tetrapyrrole linkage	4.99E-04
36	GO:0001578: microtubule bundle formation	4.99E-04
37	GO:0010073: meristem maintenance	5.12E-04
38	GO:0006166: purine ribonucleoside salvage	7.14E-04
39	GO:0009584: detection of visible light	7.14E-04
40	GO:0006145: purine nucleobase catabolic process	7.14E-04
41	GO:1901332: negative regulation of lateral root development	7.14E-04
42	GO:0006168: adenine salvage	7.14E-04
43	GO:0010268: brassinosteroid homeostasis	9.05E-04
44	GO:0006552: leucine catabolic process	9.47E-04
45	GO:0007020: microtubule nucleation	9.47E-04
46	GO:0071483: cellular response to blue light	9.47E-04
47	GO:1902347: response to strigolactone	9.47E-04
48	GO:0007059: chromosome segregation	9.69E-04
49	GO:0009646: response to absence of light	9.69E-04
50	GO:0016132: brassinosteroid biosynthetic process	1.11E-03
51	GO:1902183: regulation of shoot apical meristem development	1.20E-03
52	GO:0044209: AMP salvage	1.20E-03
53	GO:0010158: abaxial cell fate specification	1.20E-03
54	GO:0006465: signal peptide processing	1.20E-03
55	GO:0046785: microtubule polymerization	1.20E-03
56	GO:0010117: photoprotection	1.20E-03
57	GO:0046283: anthocyanin-containing compound metabolic process	1.20E-03
58	GO:0010090: trichome morphogenesis	1.25E-03
59	GO:0016125: sterol metabolic process	1.33E-03
60	GO:0006508: proteolysis	1.37E-03
61	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.47E-03
62	GO:1901371: regulation of leaf morphogenesis	1.47E-03
63	GO:0060918: auxin transport	1.47E-03
64	GO:0010337: regulation of salicylic acid metabolic process	1.47E-03
65	GO:0000910: cytokinesis	1.49E-03
66	GO:0010310: regulation of hydrogen peroxide metabolic process	1.76E-03
67	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.76E-03
68	GO:0017148: negative regulation of translation	1.76E-03
69	GO:0009942: longitudinal axis specification	1.76E-03
70	GO:0018298: protein-chromophore linkage	2.05E-03
71	GO:0010161: red light signaling pathway	2.06E-03
72	GO:0048528: post-embryonic root development	2.06E-03
73	GO:0022904: respiratory electron transport chain	2.06E-03
74	GO:0051510: regulation of unidimensional cell growth	2.06E-03
75	GO:0009834: plant-type secondary cell wall biogenesis	2.26E-03
76	GO:0010218: response to far red light	2.26E-03
77	GO:0048564: photosystem I assembly	2.39E-03
78	GO:0006353: DNA-templated transcription, termination	2.39E-03
79	GO:0009704: de-etiolation	2.39E-03
80	GO:0009808: lignin metabolic process	2.73E-03
81	GO:0071482: cellular response to light stimulus	2.73E-03
82	GO:0022900: electron transport chain	2.73E-03
83	GO:0009827: plant-type cell wall modification	2.73E-03
84	GO:0009658: chloroplast organization	2.90E-03
85	GO:0046685: response to arsenic-containing substance	3.08E-03
86	GO:0009821: alkaloid biosynthetic process	3.08E-03
87	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.08E-03
88	GO:2000024: regulation of leaf development	3.08E-03
89	GO:0009640: photomorphogenesis	3.32E-03
90	GO:1900426: positive regulation of defense response to bacterium	3.46E-03
91	GO:0009086: methionine biosynthetic process	3.46E-03
92	GO:0006259: DNA metabolic process	3.84E-03
93	GO:0006032: chitin catabolic process	3.84E-03
94	GO:0006265: DNA topological change	4.24E-03
95	GO:0006352: DNA-templated transcription, initiation	4.24E-03
96	GO:0009809: lignin biosynthetic process	4.47E-03
97	GO:0045037: protein import into chloroplast stroma	4.65E-03
98	GO:0010152: pollen maturation	4.65E-03
99	GO:0030036: actin cytoskeleton organization	5.08E-03
100	GO:0010075: regulation of meristem growth	5.08E-03
101	GO:0006094: gluconeogenesis	5.08E-03
102	GO:0009767: photosynthetic electron transport chain	5.08E-03
103	GO:0009785: blue light signaling pathway	5.08E-03
104	GO:0006302: double-strand break repair	5.52E-03
105	GO:0010053: root epidermal cell differentiation	5.97E-03
106	GO:0009825: multidimensional cell growth	5.97E-03
107	GO:0010167: response to nitrate	5.97E-03
108	GO:0009833: plant-type primary cell wall biogenesis	6.43E-03
109	GO:2000377: regulation of reactive oxygen species metabolic process	6.91E-03
110	GO:0009944: polarity specification of adaxial/abaxial axis	6.91E-03
111	GO:0006289: nucleotide-excision repair	6.91E-03
112	GO:0006825: copper ion transport	7.40E-03
113	GO:0043622: cortical microtubule organization	7.40E-03
114	GO:0015992: proton transport	7.91E-03
115	GO:0051260: protein homooligomerization	7.91E-03
116	GO:0048511: rhythmic process	7.91E-03
117	GO:0016998: cell wall macromolecule catabolic process	7.91E-03
118	GO:0031348: negative regulation of defense response	8.42E-03
119	GO:0080092: regulation of pollen tube growth	8.42E-03
120	GO:0009814: defense response, incompatible interaction	8.42E-03
121	GO:0006730: one-carbon metabolic process	8.42E-03
122	GO:0009793: embryo development ending in seed dormancy	8.92E-03
123	GO:0010584: pollen exine formation	9.49E-03
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.00E-02
125	GO:0006468: protein phosphorylation	1.02E-02
126	GO:0010118: stomatal movement	1.06E-02
127	GO:0048653: anther development	1.06E-02
128	GO:0046323: glucose import	1.12E-02
129	GO:0045489: pectin biosynthetic process	1.12E-02
130	GO:0010154: fruit development	1.12E-02
131	GO:0010197: polar nucleus fusion	1.12E-02
132	GO:0007018: microtubule-based movement	1.18E-02
133	GO:0042752: regulation of circadian rhythm	1.18E-02
134	GO:0007166: cell surface receptor signaling pathway	1.26E-02
135	GO:0071554: cell wall organization or biogenesis	1.30E-02
136	GO:0009630: gravitropism	1.36E-02
137	GO:0007264: small GTPase mediated signal transduction	1.36E-02
138	GO:0016032: viral process	1.36E-02
139	GO:0009911: positive regulation of flower development	1.68E-02
140	GO:0016311: dephosphorylation	1.96E-02
141	GO:0009817: defense response to fungus, incompatible interaction	2.03E-02
142	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.19E-02
143	GO:0009637: response to blue light	2.41E-02
144	GO:0009853: photorespiration	2.41E-02
145	GO:0045087: innate immune response	2.41E-02
146	GO:0006839: mitochondrial transport	2.64E-02
147	GO:0010114: response to red light	2.88E-02
148	GO:0008283: cell proliferation	2.88E-02
149	GO:0009644: response to high light intensity	3.05E-02
150	GO:0009414: response to water deprivation	3.05E-02
151	GO:0009664: plant-type cell wall organization	3.39E-02
152	GO:0009846: pollen germination	3.39E-02
153	GO:0009585: red, far-red light phototransduction	3.56E-02
154	GO:0051603: proteolysis involved in cellular protein catabolic process	3.65E-02
155	GO:0010224: response to UV-B	3.65E-02
156	GO:0006417: regulation of translation	3.83E-02
157	GO:0009873: ethylene-activated signaling pathway	4.02E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0048039: ubiquinone binding	0.00E+00
9	GO:0046872: metal ion binding	6.33E-05
10	GO:0005290: L-histidine transmembrane transporter activity	1.31E-04
11	GO:0004008: copper-exporting ATPase activity	1.31E-04
12	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	1.31E-04
13	GO:0031516: far-red light photoreceptor activity	1.31E-04
14	GO:0009883: red or far-red light photoreceptor activity	3.03E-04
15	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.03E-04
16	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	3.03E-04
17	GO:0000064: L-ornithine transmembrane transporter activity	3.03E-04
18	GO:0004829: threonine-tRNA ligase activity	3.03E-04
19	GO:0005366: myo-inositol:proton symporter activity	3.03E-04
20	GO:0008430: selenium binding	4.99E-04
21	GO:0004180: carboxypeptidase activity	4.99E-04
22	GO:0032549: ribonucleoside binding	4.99E-04
23	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.99E-04
24	GO:0008020: G-protein coupled photoreceptor activity	4.99E-04
25	GO:0016805: dipeptidase activity	4.99E-04
26	GO:0015189: L-lysine transmembrane transporter activity	7.14E-04
27	GO:0005354: galactose transmembrane transporter activity	7.14E-04
28	GO:0015181: arginine transmembrane transporter activity	7.14E-04
29	GO:0009678: hydrogen-translocating pyrophosphatase activity	7.14E-04
30	GO:0003999: adenine phosphoribosyltransferase activity	7.14E-04
31	GO:0009882: blue light photoreceptor activity	7.14E-04
32	GO:0001053: plastid sigma factor activity	9.47E-04
33	GO:0016987: sigma factor activity	9.47E-04
34	GO:0070628: proteasome binding	9.47E-04
35	GO:0004672: protein kinase activity	1.06E-03
36	GO:0004518: nuclease activity	1.18E-03
37	GO:0015144: carbohydrate transmembrane transporter activity	1.40E-03
38	GO:0031593: polyubiquitin binding	1.47E-03
39	GO:0016413: O-acetyltransferase activity	1.49E-03
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.53E-03
41	GO:0005351: sugar:proton symporter activity	1.62E-03
42	GO:0009927: histidine phosphotransfer kinase activity	1.76E-03
43	GO:0008017: microtubule binding	1.77E-03
44	GO:0004427: inorganic diphosphatase activity	2.06E-03
45	GO:0043022: ribosome binding	2.39E-03
46	GO:0005375: copper ion transmembrane transporter activity	2.73E-03
47	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.73E-03
48	GO:0071949: FAD binding	3.08E-03
49	GO:0016844: strictosidine synthase activity	3.46E-03
50	GO:0004568: chitinase activity	3.84E-03
51	GO:0004673: protein histidine kinase activity	3.84E-03
52	GO:0001054: RNA polymerase I activity	4.24E-03
53	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.24E-03
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.47E-03
55	GO:0042803: protein homodimerization activity	5.07E-03
56	GO:0000155: phosphorelay sensor kinase activity	5.08E-03
57	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.08E-03
58	GO:0008081: phosphoric diester hydrolase activity	5.08E-03
59	GO:0004190: aspartic-type endopeptidase activity	5.97E-03
60	GO:0043130: ubiquitin binding	6.91E-03
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.17E-03
62	GO:0016760: cellulose synthase (UDP-forming) activity	8.95E-03
63	GO:0030570: pectate lyase activity	8.95E-03
64	GO:0016301: kinase activity	9.20E-03
65	GO:0004527: exonuclease activity	1.12E-02
66	GO:0005355: glucose transmembrane transporter activity	1.18E-02
67	GO:0019901: protein kinase binding	1.24E-02
68	GO:0048038: quinone binding	1.30E-02
69	GO:0042802: identical protein binding	1.40E-02
70	GO:0016759: cellulose synthase activity	1.49E-02
71	GO:0003684: damaged DNA binding	1.49E-02
72	GO:0008237: metallopeptidase activity	1.55E-02
73	GO:0005524: ATP binding	1.82E-02
74	GO:0030247: polysaccharide binding	1.89E-02
75	GO:0008236: serine-type peptidase activity	1.96E-02
76	GO:0005096: GTPase activator activity	2.11E-02
77	GO:0004497: monooxygenase activity	2.12E-02
78	GO:0004222: metalloendopeptidase activity	2.18E-02
79	GO:0052689: carboxylic ester hydrolase activity	2.34E-02
80	GO:0003697: single-stranded DNA binding	2.41E-02
81	GO:0005515: protein binding	2.41E-02
82	GO:0051539: 4 iron, 4 sulfur cluster binding	2.64E-02
83	GO:0004185: serine-type carboxypeptidase activity	2.88E-02
84	GO:0051537: 2 iron, 2 sulfur cluster binding	3.05E-02
85	GO:0035091: phosphatidylinositol binding	3.05E-02
86	GO:0005506: iron ion binding	3.08E-02
87	GO:0009055: electron carrier activity	3.35E-02
88	GO:0003690: double-stranded DNA binding	3.65E-02
89	GO:0003777: microtubule motor activity	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0009574: preprophase band	8.19E-06
3	GO:0031209: SCAR complex	3.53E-05
4	GO:0016604: nuclear body	1.62E-04
5	GO:0009507: chloroplast	4.16E-04
6	GO:0016605: PML body	4.99E-04
7	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	9.47E-04
8	GO:0030660: Golgi-associated vesicle membrane	9.47E-04
9	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.47E-04
10	GO:0072686: mitotic spindle	1.20E-03
11	GO:0010005: cortical microtubule, transverse to long axis	1.76E-03
12	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.39E-03
13	GO:0031305: integral component of mitochondrial inner membrane	2.39E-03
14	GO:0009535: chloroplast thylakoid membrane	2.45E-03
15	GO:0005736: DNA-directed RNA polymerase I complex	3.08E-03
16	GO:0005874: microtubule	3.64E-03
17	GO:0055028: cortical microtubule	3.84E-03
18	GO:0005740: mitochondrial envelope	3.84E-03
19	GO:0016324: apical plasma membrane	3.84E-03
20	GO:0005765: lysosomal membrane	4.24E-03
21	GO:0005773: vacuole	4.53E-03
22	GO:0005938: cell cortex	5.08E-03
23	GO:0005768: endosome	7.04E-03
24	GO:0009524: phragmoplast	8.38E-03
25	GO:0005871: kinesin complex	1.00E-02
26	GO:0009536: plastid	1.13E-02
27	GO:0009295: nucleoid	1.55E-02
28	GO:0005886: plasma membrane	2.02E-02
29	GO:0019005: SCF ubiquitin ligase complex	2.03E-02
30	GO:0005802: trans-Golgi network	2.35E-02
31	GO:0005794: Golgi apparatus	2.54E-02
32	GO:0016021: integral component of membrane	2.54E-02
33	GO:0005819: spindle	2.56E-02
34	GO:0005856: cytoskeleton	3.13E-02
35	GO:0010008: endosome membrane	4.11E-02
36	GO:0016607: nuclear speck	4.11E-02
37	GO:0009706: chloroplast inner membrane	4.58E-02