co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G58160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0010068: protoderm histogenesis	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0046620: regulation of organ growth	1.51E-05
8	GO:1900865: chloroplast RNA modification	3.92E-05
9	GO:0016123: xanthophyll biosynthetic process	1.42E-04
10	GO:0009733: response to auxin	1.53E-04
11	GO:0016554: cytidine to uridine editing	2.03E-04
12	GO:0006438: valyl-tRNA aminoacylation	3.89E-04
13	GO:0070509: calcium ion import	3.89E-04
14	GO:0010080: regulation of floral meristem growth	3.89E-04
15	GO:0043087: regulation of GTPase activity	3.89E-04
16	GO:0015904: tetracycline transport	3.89E-04
17	GO:0009926: auxin polar transport	4.20E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.35E-04
19	GO:0000373: Group II intron splicing	6.50E-04
20	GO:0048255: mRNA stabilization	8.44E-04
21	GO:0001736: establishment of planar polarity	8.44E-04
22	GO:0080009: mRNA methylation	8.44E-04
23	GO:0009786: regulation of asymmetric cell division	8.44E-04
24	GO:2000123: positive regulation of stomatal complex development	8.44E-04
25	GO:0048829: root cap development	8.94E-04
26	GO:0010582: floral meristem determinacy	1.17E-03
27	GO:0010022: meristem determinacy	1.37E-03
28	GO:2001295: malonyl-CoA biosynthetic process	1.37E-03
29	GO:0045910: negative regulation of DNA recombination	1.37E-03
30	GO:0070588: calcium ion transmembrane transport	1.68E-03
31	GO:0009734: auxin-activated signaling pathway	1.75E-03
32	GO:0051639: actin filament network formation	1.97E-03
33	GO:0044211: CTP salvage	1.97E-03
34	GO:0019048: modulation by virus of host morphology or physiology	1.97E-03
35	GO:0031048: chromatin silencing by small RNA	1.97E-03
36	GO:1990019: protein storage vacuole organization	1.97E-03
37	GO:0016556: mRNA modification	1.97E-03
38	GO:0048645: animal organ formation	1.97E-03
39	GO:2000904: regulation of starch metabolic process	1.97E-03
40	GO:0010371: regulation of gibberellin biosynthetic process	1.97E-03
41	GO:0051513: regulation of monopolar cell growth	1.97E-03
42	GO:0007231: osmosensory signaling pathway	1.97E-03
43	GO:0051017: actin filament bundle assembly	2.08E-03
44	GO:0009744: response to sucrose	2.63E-03
45	GO:0051764: actin crosslink formation	2.65E-03
46	GO:0009765: photosynthesis, light harvesting	2.65E-03
47	GO:0051567: histone H3-K9 methylation	2.65E-03
48	GO:0044206: UMP salvage	2.65E-03
49	GO:0033500: carbohydrate homeostasis	2.65E-03
50	GO:2000038: regulation of stomatal complex development	2.65E-03
51	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.01E-03
52	GO:0007166: cell surface receptor signaling pathway	3.22E-03
53	GO:0010375: stomatal complex patterning	3.40E-03
54	GO:0016120: carotene biosynthetic process	3.40E-03
55	GO:0080110: sporopollenin biosynthetic process	3.40E-03
56	GO:0048497: maintenance of floral organ identity	3.40E-03
57	GO:0009793: embryo development ending in seed dormancy	3.44E-03
58	GO:0009958: positive gravitropism	4.13E-03
59	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.20E-03
60	GO:0006206: pyrimidine nucleobase metabolic process	4.20E-03
61	GO:0009913: epidermal cell differentiation	4.20E-03
62	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.20E-03
63	GO:1902456: regulation of stomatal opening	4.20E-03
64	GO:0033365: protein localization to organelle	4.20E-03
65	GO:0003006: developmental process involved in reproduction	4.20E-03
66	GO:0016458: gene silencing	4.20E-03
67	GO:0010405: arabinogalactan protein metabolic process	4.20E-03
68	GO:0048316: seed development	4.96E-03
69	GO:0048367: shoot system development	4.96E-03
70	GO:0009082: branched-chain amino acid biosynthetic process	5.06E-03
71	GO:0009099: valine biosynthetic process	5.06E-03
72	GO:0030488: tRNA methylation	5.06E-03
73	GO:0009648: photoperiodism	5.06E-03
74	GO:0010583: response to cyclopentenone	5.45E-03
75	GO:0016032: viral process	5.45E-03
76	GO:0032502: developmental process	5.45E-03
77	GO:0048528: post-embryonic root development	5.98E-03
78	GO:1900056: negative regulation of leaf senescence	5.98E-03
79	GO:0010098: suspensor development	5.98E-03
80	GO:0000082: G1/S transition of mitotic cell cycle	5.98E-03
81	GO:0010444: guard mother cell differentiation	5.98E-03
82	GO:0006955: immune response	5.98E-03
83	GO:0009828: plant-type cell wall loosening	6.18E-03
84	GO:0001522: pseudouridine synthesis	6.95E-03
85	GO:0009690: cytokinin metabolic process	6.95E-03
86	GO:0000105: histidine biosynthetic process	6.95E-03
87	GO:0051607: defense response to virus	6.98E-03
88	GO:0006468: protein phosphorylation	7.24E-03
89	GO:0010497: plasmodesmata-mediated intercellular transport	7.98E-03
90	GO:0009097: isoleucine biosynthetic process	7.98E-03
91	GO:0006098: pentose-phosphate shunt	9.05E-03
92	GO:0048507: meristem development	9.05E-03
93	GO:0046916: cellular transition metal ion homeostasis	9.05E-03
94	GO:0045892: negative regulation of transcription, DNA-templated	9.54E-03
95	GO:0006779: porphyrin-containing compound biosynthetic process	1.02E-02
96	GO:0009098: leucine biosynthetic process	1.02E-02
97	GO:0031425: chloroplast RNA processing	1.02E-02
98	GO:0010311: lateral root formation	1.02E-02
99	GO:0000160: phosphorelay signal transduction system	1.02E-02
100	GO:0040008: regulation of growth	1.14E-02
101	GO:0006782: protoporphyrinogen IX biosynthetic process	1.14E-02
102	GO:0030422: production of siRNA involved in RNA interference	1.14E-02
103	GO:0045036: protein targeting to chloroplast	1.14E-02
104	GO:0009641: shade avoidance	1.14E-02
105	GO:0006298: mismatch repair	1.14E-02
106	GO:0016441: posttranscriptional gene silencing	1.14E-02
107	GO:0006949: syncytium formation	1.14E-02
108	GO:0006865: amino acid transport	1.17E-02
109	GO:0009451: RNA modification	1.25E-02
110	GO:0006816: calcium ion transport	1.26E-02
111	GO:0009073: aromatic amino acid family biosynthetic process	1.26E-02
112	GO:0009750: response to fructose	1.26E-02
113	GO:0048765: root hair cell differentiation	1.26E-02
114	GO:0045037: protein import into chloroplast stroma	1.39E-02
115	GO:0000266: mitochondrial fission	1.39E-02
116	GO:0030001: metal ion transport	1.40E-02
117	GO:0010588: cotyledon vascular tissue pattern formation	1.52E-02
118	GO:0010102: lateral root morphogenesis	1.52E-02
119	GO:0009691: cytokinin biosynthetic process	1.52E-02
120	GO:0009725: response to hormone	1.52E-02
121	GO:0006094: gluconeogenesis	1.52E-02
122	GO:0048467: gynoecium development	1.65E-02
123	GO:0010207: photosystem II assembly	1.65E-02
124	GO:0000162: tryptophan biosynthetic process	1.94E-02
125	GO:0009664: plant-type cell wall organization	1.99E-02
126	GO:0009736: cytokinin-activated signaling pathway	2.14E-02
127	GO:0006418: tRNA aminoacylation for protein translation	2.24E-02
128	GO:0006351: transcription, DNA-templated	2.35E-02
129	GO:0006306: DNA methylation	2.39E-02
130	GO:0003333: amino acid transmembrane transport	2.39E-02
131	GO:0016998: cell wall macromolecule catabolic process	2.39E-02
132	GO:0010431: seed maturation	2.39E-02
133	GO:0010082: regulation of root meristem growth	2.71E-02
134	GO:0010584: pollen exine formation	2.88E-02
135	GO:0006284: base-excision repair	2.88E-02
136	GO:0042127: regulation of cell proliferation	2.88E-02
137	GO:0016117: carotenoid biosynthetic process	3.05E-02
138	GO:0042335: cuticle development	3.22E-02
139	GO:0080022: primary root development	3.22E-02
140	GO:0008033: tRNA processing	3.22E-02
141	GO:0034220: ion transmembrane transport	3.22E-02
142	GO:0010501: RNA secondary structure unwinding	3.22E-02
143	GO:0010087: phloem or xylem histogenesis	3.22E-02
144	GO:0010118: stomatal movement	3.22E-02
145	GO:0010305: leaf vascular tissue pattern formation	3.40E-02
146	GO:0010182: sugar mediated signaling pathway	3.40E-02
147	GO:0006342: chromatin silencing	3.40E-02
148	GO:0009741: response to brassinosteroid	3.40E-02
149	GO:0048544: recognition of pollen	3.58E-02
150	GO:0007018: microtubule-based movement	3.58E-02
151	GO:0048825: cotyledon development	3.76E-02
152	GO:0009749: response to glucose	3.76E-02
153	GO:0071554: cell wall organization or biogenesis	3.95E-02
154	GO:0000302: response to reactive oxygen species	3.95E-02
155	GO:0009058: biosynthetic process	4.02E-02
156	GO:0031047: gene silencing by RNA	4.14E-02
157	GO:0010090: trichome morphogenesis	4.33E-02
158	GO:0006914: autophagy	4.53E-02
159	GO:0007267: cell-cell signaling	4.72E-02
160	GO:0000910: cytokinesis	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0015267: channel activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0001872: (1->3)-beta-D-glucan binding	5.16E-05
7	GO:0004519: endonuclease activity	2.60E-04
8	GO:0042834: peptidoglycan binding	3.89E-04
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.89E-04
10	GO:0052381: tRNA dimethylallyltransferase activity	3.89E-04
11	GO:0004832: valine-tRNA ligase activity	3.89E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.89E-04
13	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.89E-04
14	GO:0008493: tetracycline transporter activity	8.44E-04
15	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.44E-04
16	GO:0005262: calcium channel activity	1.33E-03
17	GO:0003913: DNA photolyase activity	1.37E-03
18	GO:0003723: RNA binding	1.50E-03
19	GO:0035197: siRNA binding	1.97E-03
20	GO:0052656: L-isoleucine transaminase activity	1.97E-03
21	GO:0052654: L-leucine transaminase activity	1.97E-03
22	GO:0052655: L-valine transaminase activity	1.97E-03
23	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.36E-03
24	GO:0016301: kinase activity	2.45E-03
25	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.65E-03
26	GO:0010328: auxin influx transmembrane transporter activity	2.65E-03
27	GO:0004084: branched-chain-amino-acid transaminase activity	2.65E-03
28	GO:0019199: transmembrane receptor protein kinase activity	2.65E-03
29	GO:0004845: uracil phosphoribosyltransferase activity	2.65E-03
30	GO:0010011: auxin binding	2.65E-03
31	GO:0003989: acetyl-CoA carboxylase activity	3.40E-03
32	GO:0008725: DNA-3-methyladenine glycosylase activity	3.40E-03
33	GO:0005524: ATP binding	3.52E-03
34	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.20E-03
35	GO:0004332: fructose-bisphosphate aldolase activity	4.20E-03
36	GO:0004709: MAP kinase kinase kinase activity	4.20E-03
37	GO:0030983: mismatched DNA binding	4.20E-03
38	GO:0004674: protein serine/threonine kinase activity	4.34E-03
39	GO:0016832: aldehyde-lyase activity	5.06E-03
40	GO:0004849: uridine kinase activity	5.06E-03
41	GO:0004650: polygalacturonase activity	5.38E-03
42	GO:0000156: phosphorelay response regulator activity	5.81E-03
43	GO:0051015: actin filament binding	5.81E-03
44	GO:0009881: photoreceptor activity	5.98E-03
45	GO:0046914: transition metal ion binding	7.98E-03
46	GO:0003724: RNA helicase activity	7.98E-03
47	GO:0030247: polysaccharide binding	8.71E-03
48	GO:0005096: GTPase activator activity	1.02E-02
49	GO:0003697: single-stranded DNA binding	1.23E-02
50	GO:0008017: microtubule binding	1.29E-02
51	GO:0004521: endoribonuclease activity	1.39E-02
52	GO:0009055: electron carrier activity	1.42E-02
53	GO:0015266: protein channel activity	1.52E-02
54	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.52E-02
55	GO:0009982: pseudouridine synthase activity	1.52E-02
56	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.65E-02
57	GO:0035091: phosphatidylinositol binding	1.72E-02
58	GO:0008146: sulfotransferase activity	1.79E-02
59	GO:0003712: transcription cofactor activity	1.79E-02
60	GO:0051536: iron-sulfur cluster binding	2.08E-02
61	GO:0008289: lipid binding	2.10E-02
62	GO:0004672: protein kinase activity	2.31E-02
63	GO:0003777: microtubule motor activity	2.37E-02
64	GO:0015171: amino acid transmembrane transporter activity	2.37E-02
65	GO:0004176: ATP-dependent peptidase activity	2.39E-02
66	GO:0003727: single-stranded RNA binding	2.88E-02
67	GO:0004812: aminoacyl-tRNA ligase activity	3.05E-02
68	GO:0015035: protein disulfide oxidoreductase activity	3.14E-02
69	GO:0008026: ATP-dependent helicase activity	3.23E-02
70	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.40E-02
71	GO:0050662: coenzyme binding	3.58E-02
72	GO:0004871: signal transducer activity	3.67E-02
73	GO:0042803: protein homodimerization activity	3.67E-02
74	GO:0019901: protein kinase binding	3.76E-02
75	GO:0004872: receptor activity	3.76E-02
76	GO:0004722: protein serine/threonine phosphatase activity	3.88E-02
77	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.95E-02
78	GO:0004518: nuclease activity	4.14E-02
79	GO:0003684: damaged DNA binding	4.53E-02
80	GO:0016791: phosphatase activity	4.53E-02
81	GO:0008237: metallopeptidase activity	4.72E-02
82	GO:0005200: structural constituent of cytoskeleton	4.72E-02
83	GO:0016413: O-acetyltransferase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	4.35E-05
3	GO:0009986: cell surface	3.54E-04
4	GO:0046658: anchored component of plasma membrane	9.01E-04
5	GO:0005886: plasma membrane	1.07E-03
6	GO:0030139: endocytic vesicle	1.37E-03
7	GO:0009317: acetyl-CoA carboxylase complex	1.37E-03
8	GO:0032585: multivesicular body membrane	1.97E-03
9	GO:0032432: actin filament bundle	1.97E-03
10	GO:0005719: nuclear euchromatin	1.97E-03
11	GO:0015629: actin cytoskeleton	3.01E-03
12	GO:0009941: chloroplast envelope	3.80E-03
13	GO:0042807: central vacuole	5.98E-03
14	GO:0031225: anchored component of membrane	6.67E-03
15	GO:0000326: protein storage vacuole	7.98E-03
16	GO:0010494: cytoplasmic stress granule	9.05E-03
17	GO:0009570: chloroplast stroma	9.80E-03
18	GO:0015030: Cajal body	1.02E-02
19	GO:0000418: DNA-directed RNA polymerase IV complex	1.14E-02
20	GO:0005884: actin filament	1.26E-02
21	GO:0009574: preprophase band	1.52E-02
22	GO:0005578: proteinaceous extracellular matrix	1.52E-02
23	GO:0030095: chloroplast photosystem II	1.65E-02
24	GO:0009654: photosystem II oxygen evolving complex	2.24E-02
25	GO:0009532: plastid stroma	2.39E-02
26	GO:0005874: microtubule	2.65E-02
27	GO:0031969: chloroplast membrane	2.77E-02
28	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.88E-02
29	GO:0009706: chloroplast inner membrane	3.05E-02
30	GO:0005871: kinesin complex	3.05E-02
31	GO:0031965: nuclear membrane	3.76E-02
32	GO:0019898: extrinsic component of membrane	3.76E-02
33	GO:0005623: cell	3.92E-02
34	GO:0005743: mitochondrial inner membrane	4.10E-02