Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080127: fruit septum development0.00E+00
2GO:0006907: pinocytosis0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0045014: negative regulation of transcription by glucose0.00E+00
5GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
6GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
7GO:0009733: response to auxin1.80E-05
8GO:0009734: auxin-activated signaling pathway1.21E-04
9GO:0046620: regulation of organ growth1.25E-04
10GO:0000373: Group II intron splicing2.23E-04
11GO:0048497: maintenance of floral organ identity5.68E-04
12GO:0016123: xanthophyll biosynthetic process5.68E-04
13GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.43E-04
14GO:0009926: auxin polar transport7.20E-04
15GO:0046520: sphingoid biosynthetic process9.49E-04
16GO:0032958: inositol phosphate biosynthetic process9.49E-04
17GO:0010480: microsporocyte differentiation9.49E-04
18GO:0043087: regulation of GTPase activity9.49E-04
19GO:0015904: tetracycline transport9.49E-04
20GO:0051013: microtubule severing9.49E-04
21GO:0034757: negative regulation of iron ion transport9.49E-04
22GO:0010726: positive regulation of hydrogen peroxide metabolic process9.49E-04
23GO:0070509: calcium ion import9.49E-04
24GO:0006438: valyl-tRNA aminoacylation9.49E-04
25GO:0030488: tRNA methylation1.04E-03
26GO:0009736: cytokinin-activated signaling pathway1.22E-03
27GO:0040008: regulation of growth1.53E-03
28GO:0000105: histidine biosynthetic process1.65E-03
29GO:0000160: phosphorelay signal transduction system1.69E-03
30GO:0007186: G-protein coupled receptor signaling pathway2.02E-03
31GO:0001736: establishment of planar polarity2.07E-03
32GO:0080009: mRNA methylation2.07E-03
33GO:0009786: regulation of asymmetric cell division2.07E-03
34GO:0031648: protein destabilization2.07E-03
35GO:2000123: positive regulation of stomatal complex development2.07E-03
36GO:0010024: phytochromobilin biosynthetic process2.07E-03
37GO:0043039: tRNA aminoacylation2.07E-03
38GO:0061062: regulation of nematode larval development2.07E-03
39GO:0010271: regulation of chlorophyll catabolic process2.07E-03
40GO:0009958: positive gravitropism2.67E-03
41GO:0048829: root cap development3.38E-03
42GO:0006782: protoporphyrinogen IX biosynthetic process3.38E-03
43GO:0071398: cellular response to fatty acid3.43E-03
44GO:0006065: UDP-glucuronate biosynthetic process3.43E-03
45GO:0030029: actin filament-based process3.43E-03
46GO:0048575: short-day photoperiodism, flowering3.43E-03
47GO:0045910: negative regulation of DNA recombination3.43E-03
48GO:0090506: axillary shoot meristem initiation3.43E-03
49GO:0080117: secondary growth3.43E-03
50GO:0010583: response to cyclopentenone3.83E-03
51GO:0045037: protein import into chloroplast stroma4.50E-03
52GO:0010582: floral meristem determinacy4.50E-03
53GO:1990019: protein storage vacuole organization5.01E-03
54GO:0010321: regulation of vegetative phase change5.01E-03
55GO:0010371: regulation of gibberellin biosynthetic process5.01E-03
56GO:0006020: inositol metabolic process5.01E-03
57GO:0051513: regulation of monopolar cell growth5.01E-03
58GO:0051639: actin filament network formation5.01E-03
59GO:0034059: response to anoxia5.01E-03
60GO:0044211: CTP salvage5.01E-03
61GO:0007276: gamete generation5.01E-03
62GO:0006424: glutamyl-tRNA aminoacylation5.01E-03
63GO:2000904: regulation of starch metabolic process5.01E-03
64GO:0009725: response to hormone5.12E-03
65GO:0009887: animal organ morphogenesis5.80E-03
66GO:0009825: multidimensional cell growth6.51E-03
67GO:0044206: UMP salvage6.79E-03
68GO:0009956: radial pattern formation6.79E-03
69GO:0009755: hormone-mediated signaling pathway6.79E-03
70GO:0051764: actin crosslink formation6.79E-03
71GO:0009765: photosynthesis, light harvesting6.79E-03
72GO:2000038: regulation of stomatal complex development6.79E-03
73GO:0042991: transcription factor import into nucleus6.79E-03
74GO:0006021: inositol biosynthetic process6.79E-03
75GO:0051017: actin filament bundle assembly8.09E-03
76GO:0010311: lateral root formation8.51E-03
77GO:0016120: carotene biosynthetic process8.76E-03
78GO:0045487: gibberellin catabolic process8.76E-03
79GO:0009107: lipoate biosynthetic process8.76E-03
80GO:0010438: cellular response to sulfur starvation8.76E-03
81GO:0010158: abaxial cell fate specification8.76E-03
82GO:0010375: stomatal complex patterning8.76E-03
83GO:0080110: sporopollenin biosynthetic process8.76E-03
84GO:0009696: salicylic acid metabolic process8.76E-03
85GO:0007165: signal transduction8.96E-03
86GO:0045892: negative regulation of transcription, DNA-templated9.07E-03
87GO:0018258: protein O-linked glycosylation via hydroxyproline1.09E-02
88GO:0010942: positive regulation of cell death1.09E-02
89GO:0010405: arabinogalactan protein metabolic process1.09E-02
90GO:0010358: leaf shaping1.09E-02
91GO:0016554: cytidine to uridine editing1.09E-02
92GO:0009913: epidermal cell differentiation1.09E-02
93GO:1902456: regulation of stomatal opening1.09E-02
94GO:0009920: cell plate formation involved in plant-type cell wall biogenesis1.09E-02
95GO:0048831: regulation of shoot system development1.09E-02
96GO:0003006: developmental process involved in reproduction1.09E-02
97GO:0006206: pyrimidine nucleobase metabolic process1.09E-02
98GO:0071215: cellular response to abscisic acid stimulus1.18E-02
99GO:0009686: gibberellin biosynthetic process1.18E-02
100GO:0009826: unidimensional cell growth1.22E-02
101GO:0016042: lipid catabolic process1.25E-02
102GO:0030001: metal ion transport1.28E-02
103GO:0006351: transcription, DNA-templated1.29E-02
104GO:0010091: trichome branching1.29E-02
105GO:0042127: regulation of cell proliferation1.29E-02
106GO:0048509: regulation of meristem development1.32E-02
107GO:0031930: mitochondria-nucleus signaling pathway1.32E-02
108GO:0009861: jasmonic acid and ethylene-dependent systemic resistance1.32E-02
109GO:0010019: chloroplast-nucleus signaling pathway1.32E-02
110GO:0009744: response to sucrose1.50E-02
111GO:0010087: phloem or xylem histogenesis1.51E-02
112GO:0010444: guard mother cell differentiation1.57E-02
113GO:0000082: G1/S transition of mitotic cell cycle1.57E-02
114GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.57E-02
115GO:0009416: response to light stimulus1.57E-02
116GO:0006955: immune response1.57E-02
117GO:0048528: post-embryonic root development1.57E-02
118GO:1900056: negative regulation of leaf senescence1.57E-02
119GO:0010050: vegetative phase change1.57E-02
120GO:0048437: floral organ development1.57E-02
121GO:0010098: suspensor development1.57E-02
122GO:0010305: leaf vascular tissue pattern formation1.63E-02
123GO:0009741: response to brassinosteroid1.63E-02
124GO:0048366: leaf development1.73E-02
125GO:0009704: de-etiolation1.83E-02
126GO:2000070: regulation of response to water deprivation1.83E-02
127GO:0010492: maintenance of shoot apical meristem identity1.83E-02
128GO:0006402: mRNA catabolic process1.83E-02
129GO:0010439: regulation of glucosinolate biosynthetic process1.83E-02
130GO:0009819: drought recovery1.83E-02
131GO:0009850: auxin metabolic process1.83E-02
132GO:0009690: cytokinin metabolic process1.83E-02
133GO:0048825: cotyledon development1.89E-02
134GO:0009664: plant-type cell wall organization2.01E-02
135GO:0071554: cell wall organization or biogenesis2.02E-02
136GO:0032544: plastid translation2.11E-02
137GO:0010497: plasmodesmata-mediated intercellular transport2.11E-02
138GO:0009657: plastid organization2.11E-02
139GO:0032502: developmental process2.16E-02
140GO:0048507: meristem development2.40E-02
141GO:0048589: developmental growth2.40E-02
142GO:0009056: catabolic process2.40E-02
143GO:0051865: protein autoubiquitination2.40E-02
144GO:0046916: cellular transition metal ion homeostasis2.40E-02
145GO:0009828: plant-type cell wall loosening2.46E-02
146GO:0009793: embryo development ending in seed dormancy2.49E-02
147GO:0016573: histone acetylation2.71E-02
148GO:0009638: phototropism2.71E-02
149GO:0006779: porphyrin-containing compound biosynthetic process2.71E-02
150GO:1900865: chloroplast RNA modification2.71E-02
151GO:0016571: histone methylation2.71E-02
152GO:0048316: seed development2.82E-02
153GO:0009641: shade avoidance3.02E-02
154GO:0071555: cell wall organization3.02E-02
155GO:0006298: mismatch repair3.02E-02
156GO:0016441: posttranscriptional gene silencing3.02E-02
157GO:0006949: syncytium formation3.02E-02
158GO:0010192: mucilage biosynthetic process3.02E-02
159GO:0031627: telomeric loop formation3.02E-02
160GO:0009299: mRNA transcription3.02E-02
161GO:0009870: defense response signaling pathway, resistance gene-dependent3.02E-02
162GO:0006535: cysteine biosynthetic process from serine3.02E-02
163GO:0009750: response to fructose3.35E-02
164GO:0048229: gametophyte development3.35E-02
165GO:0048765: root hair cell differentiation3.35E-02
166GO:0009682: induced systemic resistance3.35E-02
167GO:0009073: aromatic amino acid family biosynthetic process3.35E-02
168GO:0008285: negative regulation of cell proliferation3.35E-02
169GO:0048573: photoperiodism, flowering3.46E-02
170GO:0015995: chlorophyll biosynthetic process3.46E-02
171GO:0010105: negative regulation of ethylene-activated signaling pathway3.69E-02
172GO:0006790: sulfur compound metabolic process3.69E-02
173GO:0012501: programmed cell death3.69E-02
174GO:0005983: starch catabolic process3.69E-02
175GO:0010152: pollen maturation3.69E-02
176GO:0009817: defense response to fungus, incompatible interaction3.83E-02
177GO:0009658: chloroplast organization3.98E-02
178GO:0009832: plant-type cell wall biogenesis4.02E-02
179GO:0010628: positive regulation of gene expression4.04E-02
180GO:0009691: cytokinin biosynthetic process4.04E-02
181GO:2000028: regulation of photoperiodism, flowering4.04E-02
182GO:0010075: regulation of meristem growth4.04E-02
183GO:0010588: cotyledon vascular tissue pattern formation4.04E-02
184GO:0030048: actin filament-based movement4.04E-02
185GO:0010102: lateral root morphogenesis4.04E-02
186GO:0009785: blue light signaling pathway4.04E-02
187GO:0006468: protein phosphorylation4.09E-02
188GO:0010223: secondary shoot formation4.41E-02
189GO:0010540: basipetal auxin transport4.41E-02
190GO:0009266: response to temperature stimulus4.41E-02
191GO:0009934: regulation of meristem structural organization4.41E-02
192GO:0006302: double-strand break repair4.41E-02
193GO:0048467: gynoecium development4.41E-02
194GO:0010207: photosystem II assembly4.41E-02
195GO:0010020: chloroplast fission4.41E-02
196GO:0009933: meristem structural organization4.41E-02
197GO:0006865: amino acid transport4.63E-02
198GO:0090351: seedling development4.78E-02
199GO:0070588: calcium ion transmembrane transport4.78E-02
200GO:0046854: phosphatidylinositol phosphorylation4.78E-02
201GO:0009867: jasmonic acid mediated signaling pathway4.84E-02
RankGO TermAdjusted P value
1GO:0004401: histidinol-phosphatase activity0.00E+00
2GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor0.00E+00
3GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
4GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity0.00E+00
7GO:0071633: dihydroceramidase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
10GO:0001872: (1->3)-beta-D-glucan binding2.33E-04
11GO:0010011: auxin binding3.85E-04
12GO:0052381: tRNA dimethylallyltransferase activity9.49E-04
13GO:0004832: valine-tRNA ligase activity9.49E-04
14GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity9.49E-04
15GO:0033857: diphosphoinositol-pentakisphosphate kinase activity9.49E-04
16GO:0010347: L-galactose-1-phosphate phosphatase activity9.49E-04
17GO:0010012: steroid 22-alpha hydroxylase activity9.49E-04
18GO:0000170: sphingosine hydroxylase activity9.49E-04
19GO:0050139: nicotinate-N-glucosyltransferase activity9.49E-04
20GO:0000829: inositol heptakisphosphate kinase activity9.49E-04
21GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity9.49E-04
22GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity9.49E-04
23GO:0005227: calcium activated cation channel activity9.49E-04
24GO:0042834: peptidoglycan binding9.49E-04
25GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity9.49E-04
26GO:0004818: glutamate-tRNA ligase activity9.49E-04
27GO:0000828: inositol hexakisphosphate kinase activity9.49E-04
28GO:0008568: microtubule-severing ATPase activity9.49E-04
29GO:0005096: GTPase activator activity1.69E-03
30GO:0050736: O-malonyltransferase activity2.07E-03
31GO:0009884: cytokinin receptor activity2.07E-03
32GO:0050017: L-3-cyanoalanine synthase activity2.07E-03
33GO:0017118: lipoyltransferase activity2.07E-03
34GO:0045543: gibberellin 2-beta-dioxygenase activity2.07E-03
35GO:0043425: bHLH transcription factor binding2.07E-03
36GO:0010296: prenylcysteine methylesterase activity2.07E-03
37GO:0016415: octanoyltransferase activity2.07E-03
38GO:0004047: aminomethyltransferase activity2.07E-03
39GO:0052832: inositol monophosphate 3-phosphatase activity2.07E-03
40GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.07E-03
41GO:0004109: coproporphyrinogen oxidase activity2.07E-03
42GO:0008805: carbon-monoxide oxygenase activity2.07E-03
43GO:0042284: sphingolipid delta-4 desaturase activity2.07E-03
44GO:0008934: inositol monophosphate 1-phosphatase activity2.07E-03
45GO:0008493: tetracycline transporter activity2.07E-03
46GO:0019156: isoamylase activity2.07E-03
47GO:0052833: inositol monophosphate 4-phosphatase activity2.07E-03
48GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity2.07E-03
49GO:0004871: signal transducer activity3.19E-03
50GO:0005034: osmosensor activity3.43E-03
51GO:0003979: UDP-glucose 6-dehydrogenase activity3.43E-03
52GO:0003913: DNA photolyase activity3.43E-03
53GO:0000156: phosphorelay response regulator activity4.16E-03
54GO:0051015: actin filament binding4.16E-03
55GO:0016788: hydrolase activity, acting on ester bonds4.19E-03
56GO:0080031: methyl salicylate esterase activity5.01E-03
57GO:0045544: gibberellin 20-oxidase activity5.01E-03
58GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity5.01E-03
59GO:0004930: G-protein coupled receptor activity6.79E-03
60GO:0004845: uracil phosphoribosyltransferase activity6.79E-03
61GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed6.79E-03
62GO:0010328: auxin influx transmembrane transporter activity6.79E-03
63GO:0019199: transmembrane receptor protein kinase activity6.79E-03
64GO:0052689: carboxylic ester hydrolase activity7.52E-03
65GO:0003779: actin binding8.71E-03
66GO:0005471: ATP:ADP antiporter activity8.76E-03
67GO:0070696: transmembrane receptor protein serine/threonine kinase binding8.76E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity8.76E-03
69GO:0033612: receptor serine/threonine kinase binding9.86E-03
70GO:0030983: mismatched DNA binding1.09E-02
71GO:0080030: methyl indole-3-acetate esterase activity1.09E-02
72GO:1990714: hydroxyproline O-galactosyltransferase activity1.09E-02
73GO:0004709: MAP kinase kinase kinase activity1.09E-02
74GO:0004556: alpha-amylase activity1.09E-02
75GO:0030570: pectate lyase activity1.18E-02
76GO:0019900: kinase binding1.32E-02
77GO:0004124: cysteine synthase activity1.32E-02
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.32E-02
79GO:0016832: aldehyde-lyase activity1.32E-02
80GO:0004849: uridine kinase activity1.32E-02
81GO:0009881: photoreceptor activity1.57E-02
82GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.63E-02
83GO:0043621: protein self-association1.66E-02
84GO:0004674: protein serine/threonine kinase activity1.70E-02
85GO:0008173: RNA methyltransferase activity2.11E-02
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water2.11E-02
87GO:0003724: RNA helicase activity2.11E-02
88GO:0046914: transition metal ion binding2.11E-02
89GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.40E-02
90GO:0016759: cellulose synthase activity2.46E-02
91GO:0005200: structural constituent of cytoskeleton2.61E-02
92GO:0016413: O-acetyltransferase activity2.77E-02
93GO:0004673: protein histidine kinase activity3.02E-02
94GO:0004805: trehalose-phosphatase activity3.02E-02
95GO:0003691: double-stranded telomeric DNA binding3.35E-02
96GO:0019904: protein domain specific binding3.35E-02
97GO:0030247: polysaccharide binding3.46E-02
98GO:0000049: tRNA binding3.69E-02
99GO:0000155: phosphorelay sensor kinase activity4.04E-02
100GO:0005262: calcium channel activity4.04E-02
101GO:0003725: double-stranded RNA binding4.04E-02
102GO:0009055: electron carrier activity4.09E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.41E-02
104GO:0003774: motor activity4.41E-02
105GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.66E-02
106GO:0004970: ionotropic glutamate receptor activity4.78E-02
107GO:0005217: intracellular ligand-gated ion channel activity4.78E-02
108GO:0004190: aspartic-type endopeptidase activity4.78E-02
109GO:0003712: transcription cofactor activity4.78E-02
110GO:0008146: sulfotransferase activity4.78E-02
111GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.84E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0035452: extrinsic component of plastid membrane0.00E+00
3GO:0000408: EKC/KEOPS complex0.00E+00
4GO:0000791: euchromatin9.49E-04
5GO:0009986: cell surface1.32E-03
6GO:0030870: Mre11 complex2.07E-03
7GO:0009569: chloroplast starch grain2.07E-03
8GO:0005886: plasma membrane2.34E-03
9GO:0046658: anchored component of plasma membrane2.95E-03
10GO:0030139: endocytic vesicle3.43E-03
11GO:0005884: actin filament3.91E-03
12GO:0009531: secondary cell wall5.01E-03
13GO:0032585: multivesicular body membrane5.01E-03
14GO:0032432: actin filament bundle5.01E-03
15GO:0000795: synaptonemal complex8.76E-03
16GO:0000793: condensed chromosome1.09E-02
17GO:0015629: actin cytoskeleton1.18E-02
18GO:0000794: condensed nuclear chromosome1.57E-02
19GO:0031225: anchored component of membrane1.68E-02
20GO:0005874: microtubule1.78E-02
21GO:0000783: nuclear telomere cap complex2.11E-02
22GO:0010494: cytoplasmic stress granule2.40E-02
23GO:0016459: myosin complex3.02E-02
24GO:0009707: chloroplast outer membrane3.83E-02
25GO:0009574: preprophase band4.04E-02
26GO:0005578: proteinaceous extracellular matrix4.04E-02
27GO:0030095: chloroplast photosystem II4.41E-02
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Gene type



Gene DE type